Cow genome map

Conread name: Ss1.1-Pig4-TMW8006M12.5

Conread position: 127-436
Cow position: chr25:23420534-23420843 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 194
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 159, 165

Conread position: 134-820
Cow position: chr25:34769882-34769196 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 78

Conread position: 144-904
Cow position: chr25:34770124-34769364 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 30

Conread position: 148-665
Cow position: chr25:36801463-36801976 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 318
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 267, 271

Conread position: 152-516
Cow position: chr25:23420476-23420839 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 231
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 140, 7

Conread position: 156-573
Cow position: chr25:33127814-33128231 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 247
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 156-581
Cow position: chr25:33157209-33156785 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 271
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 121, 113

Conread position: 156-747
Cow position: chr25:34447286-34447870 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 368
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 201, 190

Conread position: 156-822
Cow position: chr25:33299163-33299828 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 33

Conread position: 156-855
Cow position: chr25:33299079-33299778 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 19

Conread position: 157-855
Cow position: chr25:36801148-36801834 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 420
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 40, 51

Conread position: 158-821
Cow position: chr25:34447204-34447858 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 190

Conread position: 159-657
Cow position: chr25:33127733-33128231 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 312
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 110

Conread position: 159-685
Cow position: chr25:34769773-34769247 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 159-853
Cow position: chr25:34770025-34769331 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 159-855
Cow position: chr25:33298914-33299610 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 109

Conread position: 205-619
Cow position: chr25:23420444-23420858 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 268
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 81, 87

Conread position: 205-738
Cow position: chr25:33144910-33145440 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 317
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 109, 102

Conread position: 205-787
Cow position: chr25:36800860-36801430 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 355
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 409, 400

Conread position: 205-1014
Cow position: chr25:33298792-33299609 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 236

Conread position: 206-847
Cow position: chr25:36800693-36801334 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 387
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 464, 460

Conread position: 207-849
Cow position: chr25:33157410-33156767 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 85

Conread position: 207-1016
Cow position: chr25:34447001-34447810 (view UCSC Genome Browser custom track)
Alignm length: 819
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 16

Conread position: 212-761
Cow position: chr25:34763146-34763692 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 320
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 41, 35

Conread position: 212-771
Cow position: chr25:33305416-33304865 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 347
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 140, 11

Conread position: 212-928
Cow position: chr25:33299051-33299769 (view UCSC Genome Browser custom track)
Alignm length: 725
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 56

Conread position: 212-1014
Cow position: chr25:33298631-33299441 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 410, 416

Conread position: 213-604
Cow position: chr25:22235898-22236289 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 231
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 373, 369

Conread position: 219-904
Cow position: chr25:326488-327179 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 407
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 129, 122

Conread position: 224-853
Cow position: chr25:34446934-34447563 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 68

Conread position: 224-1014
Cow position: chr25:33298558-33299357 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 45

Conread position: 225-685
Cow position: chr25:23420380-23420840 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 56

Conread position: 225-822
Cow position: chr25:36801372-36801968 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 366
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 65, 54

Conread position: 226-818
Cow position: chr25:33144849-33145436 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 357
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 51, 26

Conread position: 229-570
Cow position: chr25:326924-327265 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 224
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 19, 24

Conread position: 236-741
Cow position: chr25:33127726-33128231 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 242-906
Cow position: chr25:33157459-33156795 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 50

Conread position: 252-763
Cow position: chr25:33305940-33305434 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 311
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 16

Conread position: 252-937
Cow position: chr25:36800655-36801341 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 331

Conread position: 275-822
Cow position: chr25:326712-327265 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 336
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 173, 275

Conread position: 276-516
Cow position: chr25:34432984-34433224 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 282-903
Cow position: chr25:34713836-34714457 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 362
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 305, 300

Conread position: 289-904
Cow position: chr25:34763058-34763667 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 358
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 325, 66

Conread position: 290-794
Cow position: chr25:36801521-36802023 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 312
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 478, 392

Conread position: 291-928
Cow position: chr25:36800526-36801165 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 383
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 54, 49

Conread position: 296-871
Cow position: chr25:33144833-33145405 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 191

Conread position: 297-774
Cow position: chr25:33306563-33306093 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 290
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 45, 62

Conread position: 299-848
Cow position: chr25:36801362-36801911 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 339
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 238, 264

Conread position: 302-810
Cow position: chr25:33127708-33128216 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 307

Conread position: 302-818
Cow position: chr25:34714024-34714540 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 316
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 39

Conread position: 305-769
Cow position: chr25:23420376-23420840 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 308-935
Cow position: chr25:34762825-34763450 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 361
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 397, 298

Conread position: 310-904
Cow position: chr25:23420228-23420807 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 42

Conread position: 312-1025
Cow position: chr25:33298479-33299199 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 313-909
Cow position: chr25:33306046-33305456 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 365
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 63, 76

Conread position: 383-760
Cow position: chr25:22235900-22236277 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 236
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 47, 72

Conread position: 386-782
Cow position: chr25:346438-346834 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 245
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 172, 182

Conread position: 389-1083
Cow position: chr25:34446931-34447638 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 427
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 225, 219

Conread position: 390-853
Cow position: chr25:23420377-23420840 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 299

Conread position: 393-935
Cow position: chr25:33144846-33145386 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 193

Conread position: 396-844
Cow position: chr25:22235829-22236277 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 271
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 218, 213

Conread position: 411-1016
Cow position: chr25:33157458-33156845 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 195

Conread position: 417-1016
Cow position: chr25:34770103-34769496 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 298

Conread position: 443-794
Cow position: chr25:18642206-18641854 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 224
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 139, 15

Conread position: 465-853
Cow position: chr25:34732624-34732235 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 231
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 225

Conread position: 486-1005
Cow position: chr25:33157467-33156940 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 97

Conread position: 494-854
Cow position: chr25:33127732-33128092 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 230
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 563-848
Cow position: chr25:366724-367009 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 178
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.