Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8006M12.5 |
| Conread position: | 127-436 |
| Cow position: | chr25:23420534-23420843 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 159, 165 |
| Conread position: | 134-820 |
| Cow position: | chr25:34769882-34769196 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 144-904 |
| Cow position: | chr25:34770124-34769364 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 148-665 |
| Cow position: | chr25:36801463-36801976 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 267, 271 |
| Conread position: | 152-516 |
| Cow position: | chr25:23420476-23420839 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 140, 7 |
| Conread position: | 156-573 |
| Cow position: | chr25:33127814-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-581 |
| Cow position: | chr25:33157209-33156785 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 121, 113 |
| Conread position: | 156-747 |
| Cow position: | chr25:34447286-34447870 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 368 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 201, 190 |
| Conread position: | 156-822 |
| Cow position: | chr25:33299163-33299828 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 33 |
| Conread position: | 156-855 |
| Cow position: | chr25:33299079-33299778 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 157-855 |
| Cow position: | chr25:36801148-36801834 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 420 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 158-821 |
| Cow position: | chr25:34447204-34447858 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 190 |
| Conread position: | 159-657 |
| Cow position: | chr25:33127733-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 159-685 |
| Cow position: | chr25:34769773-34769247 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-853 |
| Cow position: | chr25:34770025-34769331 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-855 |
| Cow position: | chr25:33298914-33299610 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 109 |
| Conread position: | 205-619 |
| Cow position: | chr25:23420444-23420858 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 81, 87 |
| Conread position: | 205-738 |
| Cow position: | chr25:33144910-33145440 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 109, 102 |
| Conread position: | 205-787 |
| Cow position: | chr25:36800860-36801430 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 355 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 409, 400 |
| Conread position: | 205-1014 |
| Cow position: | chr25:33298792-33299609 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 236 |
| Conread position: | 206-847 |
| Cow position: | chr25:36800693-36801334 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 387 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 464, 460 |
| Conread position: | 207-849 |
| Cow position: | chr25:33157410-33156767 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 207-1016 |
| Cow position: | chr25:34447001-34447810 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 212-761 |
| Cow position: | chr25:34763146-34763692 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 320 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 212-771 |
| Cow position: | chr25:33305416-33304865 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 347 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 140, 11 |
| Conread position: | 212-928 |
| Cow position: | chr25:33299051-33299769 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 212-1014 |
| Cow position: | chr25:33298631-33299441 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 416 |
| Conread position: | 213-604 |
| Cow position: | chr25:22235898-22236289 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 373, 369 |
| Conread position: | 219-904 |
| Cow position: | chr25:326488-327179 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 407 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 129, 122 |
| Conread position: | 224-853 |
| Cow position: | chr25:34446934-34447563 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 224-1014 |
| Cow position: | chr25:33298558-33299357 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 225-685 |
| Cow position: | chr25:23420380-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 225-822 |
| Cow position: | chr25:36801372-36801968 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 366 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 226-818 |
| Cow position: | chr25:33144849-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 357 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 229-570 |
| Cow position: | chr25:326924-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 236-741 |
| Cow position: | chr25:33127726-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 242-906 |
| Cow position: | chr25:33157459-33156795 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 252-763 |
| Cow position: | chr25:33305940-33305434 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 252-937 |
| Cow position: | chr25:36800655-36801341 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 331 |
| Conread position: | 275-822 |
| Cow position: | chr25:326712-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 336 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 173, 275 |
| Conread position: | 276-516 |
| Cow position: | chr25:34432984-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 282-903 |
| Cow position: | chr25:34713836-34714457 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 362 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 305, 300 |
| Conread position: | 289-904 |
| Cow position: | chr25:34763058-34763667 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 358 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 325, 66 |
| Conread position: | 290-794 |
| Cow position: | chr25:36801521-36802023 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 312 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 478, 392 |
| Conread position: | 291-928 |
| Cow position: | chr25:36800526-36801165 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 383 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 54, 49 |
| Conread position: | 296-871 |
| Cow position: | chr25:33144833-33145405 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 191 |
| Conread position: | 297-774 |
| Cow position: | chr25:33306563-33306093 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 299-848 |
| Cow position: | chr25:36801362-36801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 238, 264 |
| Conread position: | 302-810 |
| Cow position: | chr25:33127708-33128216 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 307 |
| Conread position: | 302-818 |
| Cow position: | chr25:34714024-34714540 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 305-769 |
| Cow position: | chr25:23420376-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 308-935 |
| Cow position: | chr25:34762825-34763450 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 397, 298 |
| Conread position: | 310-904 |
| Cow position: | chr25:23420228-23420807 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 42 |
| Conread position: | 312-1025 |
| Cow position: | chr25:33298479-33299199 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 79 |
| Conread position: | 313-909 |
| Cow position: | chr25:33306046-33305456 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 365 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 383-760 |
| Cow position: | chr25:22235900-22236277 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 386-782 |
| Cow position: | chr25:346438-346834 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 172, 182 |
| Conread position: | 389-1083 |
| Cow position: | chr25:34446931-34447638 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 427 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 225, 219 |
| Conread position: | 390-853 |
| Cow position: | chr25:23420377-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 299 |
| Conread position: | 393-935 |
| Cow position: | chr25:33144846-33145386 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 193 |
| Conread position: | 396-844 |
| Cow position: | chr25:22235829-22236277 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 218, 213 |
| Conread position: | 411-1016 |
| Cow position: | chr25:33157458-33156845 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 195 |
| Conread position: | 417-1016 |
| Cow position: | chr25:34770103-34769496 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 298 |
| Conread position: | 443-794 |
| Cow position: | chr25:18642206-18641854 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 139, 15 |
| Conread position: | 465-853 |
| Cow position: | chr25:34732624-34732235 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 225 |
| Conread position: | 486-1005 |
| Cow position: | chr25:33157467-33156940 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 97 |
| Conread position: | 494-854 |
| Cow position: | chr25:33127732-33128092 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 563-848 |
| Cow position: | chr25:366724-367009 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.