Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8006M12.5 |
| Conread position: | 3-651 |
| Cow position: | chr28:7758181-7758830 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 355 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 113, 222 |
| Conread position: | 115-1007 |
| Cow position: | chr28:7757726-7758607 (view UCSC Genome Browser custom track) |
| Alignm length: | 903 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 5 |
| Conread position: | 146-935 |
| Cow position: | chr28:9252770-9253559 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 122 |
| Conread position: | 151-853 |
| Cow position: | chr28:7758011-7758697 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 396 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 156-1007 |
| Cow position: | chr28:9298579-9299420 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 508 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 157-1083 |
| Cow position: | chr28:7757681-7758604 (view UCSC Genome Browser custom track) |
| Alignm length: | 941 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 166-744 |
| Cow position: | chr28:9299006-9299567 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 192-909 |
| Cow position: | chr28:7757381-7758097 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 204-521 |
| Cow position: | chr28:9253247-9253564 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 158, 147 |
| Conread position: | 204-663 |
| Cow position: | chr28:9290230-9290685 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 205-750 |
| Cow position: | chr28:7810409-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 333 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 503, 129 |
| Conread position: | 205-833 |
| Cow position: | chr28:7810325-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 377 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 205-935 |
| Cow position: | chr28:7757561-7758292 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 253 |
| Conread position: | 206-607 |
| Cow position: | chr28:9290314-9290713 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 360, 66 |
| Conread position: | 212-852 |
| Cow position: | chr28:9289985-9290622 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 138 |
| Conread position: | 212-1007 |
| Cow position: | chr28:7757652-7758439 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 142 |
| Conread position: | 214-1021 |
| Cow position: | chr28:9298387-9299196 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 486 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 167, 115 |
| Conread position: | 225-821 |
| Cow position: | chr28:9253016-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 67 |
| Conread position: | 243-748 |
| Cow position: | chr28:11334038-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 499, 494 |
| Conread position: | 244-606 |
| Cow position: | chr28:34679544-34679179 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 251-909 |
| Cow position: | chr28:7810287-7810936 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 566, 248 |
| Conread position: | 252-903 |
| Cow position: | chr28:9298925-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 404 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 253-855 |
| Cow position: | chr28:7757357-7757959 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 336 |
| Conread position: | 274-770 |
| Cow position: | chr28:34679596-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 313 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 80, 50 |
| Conread position: | 282-1070 |
| Cow position: | chr28:7757057-7757852 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 482 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 291-773 |
| Cow position: | chr28:9290151-9290627 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 57 |
| Conread position: | 293-930 |
| Cow position: | chr28:11334156-11333517 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 387 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 122, 126 |
| Conread position: | 296-1017 |
| Cow position: | chr28:9289985-9290711 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 296-1018 |
| Cow position: | chr28:9289824-9290544 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 446 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 153, 56 |
| Conread position: | 297-853 |
| Cow position: | chr28:9253004-9253560 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 292 |
| Conread position: | 303-770 |
| Cow position: | chr28:34696071-34696538 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 311, 307 |
| Conread position: | 311-748 |
| Cow position: | chr28:7758323-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 128, 149 |
| Conread position: | 382-854 |
| Cow position: | chr28:34696066-34696538 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 394-849 |
| Cow position: | chr28:34673353-34673809 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 217, 231 |
| Conread position: | 395-827 |
| Cow position: | chr28:7758323-7758755 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-909 |
| Cow position: | chr28:7757334-7757845 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 268 |
| Conread position: | 463-857 |
| Cow position: | chr28:34679575-34679180 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 470-1017 |
| Cow position: | chr28:34695902-34696457 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 86 |
| Conread position: | 487-854 |
| Cow position: | chr28:34673362-34673729 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 120, 141 |
| Conread position: | 501-854 |
| Cow position: | chr28:7810285-7810629 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 283, 250 |
Show alignments to all cow chromosomes.