Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8006M12.5 |
| Conread position: | 112-1031 |
| Cow position: | chr7:8243187-8244111 (view UCSC Genome Browser custom track) |
| Alignm length: | 930 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 193 |
| Conread position: | 120-828 |
| Cow position: | chr7:11434910-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 121-854 |
| Cow position: | chr7:1014664-1015397 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 538, 542 |
| Conread position: | 125-640 |
| Cow position: | chr7:11600954-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 317 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 152, 144 |
| Conread position: | 127-602 |
| Cow position: | chr7:18390313-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-686 |
| Cow position: | chr7:1439709-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 337 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 129-434 |
| Cow position: | chr7:3180522-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 283, 0 |
| Conread position: | 130-854 |
| Cow position: | chr7:42879039-42878314 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 563 |
| Conread position: | 130-1016 |
| Cow position: | chr7:3179850-3180745 (view UCSC Genome Browser custom track) |
| Alignm length: | 900 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 59 |
| Conread position: | 131-1015 |
| Cow position: | chr7:8325056-8325948 (view UCSC Genome Browser custom track) |
| Alignm length: | 899 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 144 |
| Conread position: | 132-685 |
| Cow position: | chr7:8278172-8278716 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 347 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 159, 144 |
| Conread position: | 134-654 |
| Cow position: | chr7:3180275-3180795 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 207 |
| Conread position: | 134-770 |
| Cow position: | chr7:11601113-11600477 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 134-901 |
| Cow position: | chr7:42879118-42878351 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 455 |
| Conread position: | 134-904 |
| Cow position: | chr7:3180023-3180793 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 134-904 |
| Cow position: | chr7:8277754-8278522 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 228 |
| Conread position: | 134-904 |
| Cow position: | chr7:42879202-42878432 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 533, 539 |
| Conread position: | 134-1007 |
| Cow position: | chr7:8324807-8325688 (view UCSC Genome Browser custom track) |
| Alignm length: | 884 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 143 |
| Conread position: | 148-825 |
| Cow position: | chr7:1014775-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 203 |
| Conread position: | 148-1015 |
| Cow position: | chr7:3179701-3180576 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 151-854 |
| Cow position: | chr7:18390001-18390704 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 200 |
| Conread position: | 151-1070 |
| Cow position: | chr7:8324992-8325925 (view UCSC Genome Browser custom track) |
| Alignm length: | 939 |
| Alignm identity: | 645 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 452, 463 |
| Conread position: | 153-685 |
| Cow position: | chr7:18390255-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 326 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 315, 285 |
| Conread position: | 154-1016 |
| Cow position: | chr7:8277271-8278140 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 156-484 |
| Cow position: | chr7:8325837-8326167 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 131, 117 |
| Conread position: | 156-614 |
| Cow position: | chr7:1439820-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 156-685 |
| Cow position: | chr7:8243902-8244413 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 336 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 137, 92 |
| Conread position: | 156-724 |
| Cow position: | chr7:11601007-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 105 |
| Conread position: | 156-854 |
| Cow position: | chr7:11601175-11600477 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 113 |
| Conread position: | 156-1016 |
| Cow position: | chr7:8242895-8243762 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 300 |
| Conread position: | 156-1016 |
| Cow position: | chr7:8277692-8278558 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 301 |
| Conread position: | 157-909 |
| Cow position: | chr7:8277609-8278361 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 91 |
| Conread position: | 157-1082 |
| Cow position: | chr7:8324914-8325850 (view UCSC Genome Browser custom track) |
| Alignm length: | 943 |
| Alignm identity: | 630 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 159-685 |
| Cow position: | chr7:1014954-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 335 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 159-744 |
| Cow position: | chr7:11434801-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 118 |
| Conread position: | 159-810 |
| Cow position: | chr7:8325504-8326158 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 89 |
| Conread position: | 159-823 |
| Cow position: | chr7:8277947-8278609 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 118 |
| Conread position: | 159-858 |
| Cow position: | chr7:1014456-1015149 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 72 |
| Conread position: | 159-1015 |
| Cow position: | chr7:8325252-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 365 |
| Conread position: | 159-1016 |
| Cow position: | chr7:1014288-1015147 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 455, 370 |
| Conread position: | 159-1020 |
| Cow position: | chr7:8242814-8243682 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 89 |
| Conread position: | 159-1026 |
| Cow position: | chr7:8277527-8278403 (view UCSC Genome Browser custom track) |
| Alignm length: | 885 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 117 |
| Conread position: | 168-1037 |
| Cow position: | chr7:8324757-8325634 (view UCSC Genome Browser custom track) |
| Alignm length: | 883 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 194-769 |
| Cow position: | chr7:1439692-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 202-1007 |
| Cow position: | chr7:1439444-1440257 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 144 |
| Conread position: | 205-909 |
| Cow position: | chr7:11601210-11600506 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 87 |
| Conread position: | 206-519 |
| Cow position: | chr7:42878626-42878313 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 66, 62 |
| Conread position: | 207-940 |
| Cow position: | chr7:11434993-11434277 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 164 |
| Conread position: | 219-1014 |
| Cow position: | chr7:42879283-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 492, 10 |
| Conread position: | 242-1016 |
| Cow position: | chr7:3179711-3180493 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 669, 0 |
| Conread position: | 243-854 |
| Cow position: | chr7:3180216-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 366 |
| Conread position: | 243-903 |
| Cow position: | chr7:1439569-1440229 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 28 |
| Conread position: | 243-1016 |
| Cow position: | chr7:8324748-8325529 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 251-568 |
| Cow position: | chr7:8244150-8244464 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 247, 21 |
| Conread position: | 265-1020 |
| Cow position: | chr7:11601234-11600471 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 108 |
| Conread position: | 280-686 |
| Cow position: | chr7:1438301-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 166, 150 |
| Conread position: | 280-937 |
| Cow position: | chr7:18390046-18390705 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 326 |
| Conread position: | 290-853 |
| Cow position: | chr7:1439703-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 65 |
| Conread position: | 291-855 |
| Cow position: | chr7:18390225-18390789 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 272 |
| Conread position: | 296-1017 |
| Cow position: | chr7:1014671-1015400 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 614, 0 |
| Conread position: | 304-862 |
| Cow position: | chr7:11434824-11434273 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 152 |
| Conread position: | 306-1016 |
| Cow position: | chr7:1014267-1014979 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 431 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 306, 297 |
| Conread position: | 308-1014 |
| Cow position: | chr7:8324729-8325443 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 308-1015 |
| Cow position: | chr7:8277256-8277971 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 308-1016 |
| Cow position: | chr7:11434974-11434279 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 147 |
| Conread position: | 312-1014 |
| Cow position: | chr7:42879276-42878566 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 380-1015 |
| Cow position: | chr7:1014257-1014894 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 390 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 321, 308 |
| Conread position: | 392-1070 |
| Cow position: | chr7:8324729-8325421 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 132 |
| Conread position: | 397-1017 |
| Cow position: | chr7:18389995-18390623 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 401-1023 |
| Cow position: | chr7:8242804-8243433 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 556-1014 |
| Cow position: | chr7:42879284-42878818 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 27 |
Show alignments to all cow chromosomes.