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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8012H18.3
        

               
Conread position:
               
1-192
               

               
Cow position:
               
chr5:37366868-37366676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:42677198-42677000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:58793649-58793849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr5:50870513-50870336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
48, 170
               

               
Conread position:
               
2-202
               

               
Cow position:
               
chr5:4218838-4218646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr5:28324321-28324112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr5:51151390-51151596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
47, 181
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr5:63917443-63917643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
73, 88
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr5:46322843-46323046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
58, 86
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chr5:64321719-64321514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 61
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr5:54064748-54064540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 97
               

               
Conread position:
               
3-146
               

               
Cow position:
               
chr5:45025952-45026092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr5:4220950-4220793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr5:52040349-52040507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr5:57575735-57575578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr5:34561978-34561813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
3-172
               

               
Cow position:
               
chr5:17644689-17644854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
3-174
               

               
Cow position:
               
chr5:40039804-40039974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr5:8994601-8994770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 47
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr5:43395174-43395347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 84
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr5:11427269-11427453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr5:71158295-71158477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr5:35235743-35235923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
3-192
               

               
Cow position:
               
chr5:56028562-56028751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr5:72564728-72564538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr5:5257327-5257522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr5:63964200-63964398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr5:51357534-51357730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr5:63388760-63388568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
72, 43
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr5:37646040-37645846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
72, 80
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr5:45845728-45845922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr5:56820296-56820487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr5:64823349-64823540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr5:21828832-21828636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
48, 61
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr5:52165212-52165410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 183
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr5:28926215-28926414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 169
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr5:41303123-41303320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr5:14420377-14420575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr5:55176856-55176659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:5111109-5111308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:5938291-5938093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:14314491-14314291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 61
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:24349074-24348880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:28230120-28229926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
155, 47
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:34050082-34049878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:47871076-47871282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:55966913-55967114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:56433770-56433570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:58144635-58144837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
48, 76
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:58856070-58855873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 94
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr5:60520128-60519935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:1104896-1105103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:16509062-16508864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 96
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:20128020-20127822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:28927623-28927825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
60, 47
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:39937071-39936871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:45225858-45226056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 94
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:45706012-45705815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:47317005-47317200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr5:47704160-47704367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:3492161-3491968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 82
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:6045257-6045053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 61
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:13691602-13691809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:14550615-14550819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
53, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:15426495-15426295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
38, 30
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:16185053-16184856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
72, 98
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:18702243-18702446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
46, 21
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:20554781-20554982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
35, 54
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:21944363-21944148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:27403270-27403477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:28248139-28247943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 53
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:29828015-29827820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:30816685-30816482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:34441825-34442025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:34528521-34528328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:35826569-35826357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:39094521-39094320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 96
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:40889319-40889517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:41165052-41164855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 52
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:41522832-41523026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:42777730-42777531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:43474813-43474614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:45170331-45170129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
37, 59
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:47313442-47313240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 112
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:50723015-50722817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:50950520-50950320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:55756459-55756675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:56135002-56135202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:57935143-57935347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:58005217-58005011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:61840158-61839955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:62870078-62870268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:65932962-65933161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 95
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr5:75436922-75437130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:2332544-2332748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:2500218-2500415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:4032026-4032223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
48, 89
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:9090054-9090257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
47, 61
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:16893807-16894010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:21525137-21524930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:26377703-26377901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
74, 47
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:26990358-26990159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:28330367-28330566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:29771482-29771284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:32963665-32963863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:35145315-35145118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:37646580-37646786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 63
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:37814588-37814389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:42744754-42744563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:44054069-44054272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:45036987-45036786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
70, 88
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:47601785-47601583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
72, 117
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:61600385-61600178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:65776416-65776620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:65924725-65924933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 141
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:68604824-68604625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:70101841-70102042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 24
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr5:72903263-72903458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr5:43992288-43992089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr5:17063124-17063331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr5:42748123-42747918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr5:68872160-68871951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr5:12709853-12709655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
47, 95
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr5:52000187-51999988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:17999527-17999729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 95
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:18574138-18573937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 29
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:26790489-26790680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 94
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:35208229-35208028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
5, 43
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chr5:54404926-54405128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 46
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr5:40356900-40357105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 136
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr5:54311299-54311107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 94
               

               
Conread position:
               
5-202
               

               
Cow position:
               
chr5:16938043-16938239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
5-202
               

               
Cow position:
               
chr5:21617421-21617224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
69, 49
               

               
Conread position:
               
6-198
               

               
Cow position:
               
chr5:35684899-35684707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
6-200
               

               
Cow position:
               
chr5:4506991-4507190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
6-200
               

               
Cow position:
               
chr5:56070819-56070624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
6-202
               

               
Cow position:
               
chr5:15598270-15598465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 58
               

               
Conread position:
               
6-204
               

               
Cow position:
               
chr5:34638847-34638652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
6-204
               

               
Cow position:
               
chr5:50533424-50533617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 90
               

               
Conread position:
               
6-204
               

               
Cow position:
               
chr5:59297996-59298192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
6-204
               

               
Cow position:
               
chr5:62826791-62826986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 90
               

               
Conread position:
               
6-204
               

               
Cow position:
               
chr5:64139529-64139330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
45, 58
               

               
Conread position:
               
6-204
               

               
Cow position:
               
chr5:66257601-66257409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 36
               

               
Conread position:
               
6-205
               

               
Cow position:
               
chr5:10789713-10789913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
7-207
               

               
Cow position:
               
chr5:54530945-54530746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
68, 29
               

               
Conread position:
               
8-205
               

               
Cow position:
               
chr5:24642765-24642956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
151, 66
               

               
Conread position:
               
9-202
               

               
Cow position:
               
chr5:32153356-32153547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
9-202
               

               
Cow position:
               
chr5:43923185-43923380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr5:33414449-33414637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
9-204
               

               
Cow position:
               
chr5:3281794-3281598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 29
               

               
Conread position:
               
9-204
               

               
Cow position:
               
chr5:31469622-31469816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
10-204
               

               
Cow position:
               
chr5:33661816-33661621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
41, 26
               

               
Conread position:
               
10-204
               

               
Cow position:
               
chr5:61576503-61576306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
40, 101
               

               
Conread position:
               
11-170
               

               
Cow position:
               
chr5:7044749-7044909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
11-184
               

               
Cow position:
               
chr5:35969499-35969329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 27
               

               
Conread position:
               
11-189
               

               
Cow position:
               
chr5:62142628-62142452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
11-198
               

               
Cow position:
               
chr5:31640378-31640200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
11-201
               

               
Cow position:
               
chr5:57074375-57074565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
11-202
               

               
Cow position:
               
chr5:30302851-30302667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
11-202
               

               
Cow position:
               
chr5:53835671-53835484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
11-203
               

               
Cow position:
               
chr5:72150205-72150018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chr5:26467581-26467387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 39
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chr5:34505969-34506159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chr5:43858475-43858661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
63, 39
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chr5:46509909-46510101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chr5:55942438-55942631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chr5:65941292-65941486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr5:7764035-7763839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr5:75828778-75828968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
11-211
               

               
Cow position:
               
chr5:6086600-6086802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
11-235
               

               
Cow position:
               
chr5:30253699-30253479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
12-195
               

               
Cow position:
               
chr5:14415736-14415549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 122
               

               
Conread position:
               
12-196
               

               
Cow position:
               
chr5:64176160-64176346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 52
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr5:47888752-47888942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
42, 38
               

               
Conread position:
               
12-200
               

               
Cow position:
               
chr5:9859757-9859947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
12-201
               

               
Cow position:
               
chr5:27690102-27690289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 25
               

               
Conread position:
               
12-201
               

               
Cow position:
               
chr5:36868695-36868515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
12-201
               

               
Cow position:
               
chr5:44994081-44994267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
12-202
               

               
Cow position:
               
chr5:30845070-30844881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 101
               

               
Conread position:
               
12-203
               

               
Cow position:
               
chr5:38853323-38853127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chr5:44752354-44752543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chr5:50729457-50729262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chr5:56201159-56201354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chr5:63840187-63840379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chr5:694540-694353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chr5:29505065-29504878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
63, 25
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chr5:56524132-56523940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
39, 52
               

               
Conread position:
               
13-200
               

               
Cow position:
               
chr5:66297194-66297009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 51
               

               
Conread position:
               
13-205
               

               
Cow position:
               
chr5:20783580-20783394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
14-192
               

               
Cow position:
               
chr5:16025502-16025682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
14-204
               

               
Cow position:
               
chr5:17087067-17087263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 19
               

               
Conread position:
               
14-205
               

               
Cow position:
               
chr5:64844167-64844351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
16-202
               

               
Cow position:
               
chr5:30638905-30639081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
16-204
               

               
Cow position:
               
chr5:38833076-38832884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
18-204
               

               
Cow position:
               
chr5:42667435-42667621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 69
               

               
Conread position:
               
18-205
               

               
Cow position:
               
chr5:6528634-6528446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
19-204
               

               
Cow position:
               
chr5:14703016-14703201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
19-204
               

               
Cow position:
               
chr5:59443298-59443484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
38, 31
               

               
Conread position:
               
19-205
               

               
Cow position:
               
chr5:2851268-2851080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 160
               

               
Conread position:
               
19-205
               

               
Cow position:
               
chr5:29353176-29353363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 72
               

               
Conread position:
               
22-204
               

               
Cow position:
               
chr5:32087767-32087954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
22-205
               

               
Cow position:
               
chr5:15363841-15363656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 29
               

               
Conread position:
               
26-204
               

               
Cow position:
               
chr5:6033183-6033005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
30-198
               

               
Cow position:
               
chr5:61455698-61455527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 20
               

               
Conread position:
               
36-205
               

               
Cow position:
               
chr5:35125952-35125782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 69
               

               
Conread position:
               
40-171
               

               
Cow position:
               
chr5:9390468-9390335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
47-187
               

               
Cow position:
               
chr5:25935873-25935734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
47-204
               

               
Cow position:
               
chr5:60948141-60947985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
56-196
               

               
Cow position:
               
chr5:27306233-27306093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
56-203
               

               
Cow position:
               
chr5:9499176-9499325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
56-204
               

               
Cow position:
               
chr5:27011210-27011061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
56-204
               

               
Cow position:
               
chr5:46080344-46080489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
56-204
               

               
Cow position:
               
chr5:66119336-66119486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
56-204
               

               
Cow position:
               
chr5:67212294-67212145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
57-202
               

               
Cow position:
               
chr5:26133162-26133305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
63-204
               

               
Cow position:
               
chr5:15479019-15478880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
84-205
               

               
Cow position:
               
chr5:64523993-64524114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
108-212
               

               
Cow position:
               
chr5:24919013-24919118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               
Show alignments to all cow chromosomes.