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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8012H18.3
        

               
Conread position:
               
1-201
               

               
Cow position:
               
chrX:39938555-39938746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chrX:31250356-31250162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chrX:20697635-20697840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chrX:33466578-33466385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:2383457-2383256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:5123388-5123594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 11
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chrX:21004649-21004451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
2-198
               

               
Cow position:
               
chrX:48195069-48195267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
2-200
               

               
Cow position:
               
chrX:37232381-37232181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 29
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chrX:5872289-5872081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chrX:12309417-12309621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
49, 177
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chrX:36778380-36778174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
52, 48
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chrX:45403859-45404066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chrX:47967569-47967367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 75
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chrX:2206582-2206777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chrX:1176012-1176169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chrX:23785630-23785467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chrX:31256833-31256681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chrX:33000870-33000717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 61
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chrX:6234485-6234643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chrX:30832882-30833047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
3-174
               

               
Cow position:
               
chrX:10831526-10831699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 47
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chrX:9425773-9425950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 47
               

               
Conread position:
               
3-189
               

               
Cow position:
               
chrX:14599500-14599312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
3-192
               

               
Cow position:
               
chrX:29601863-29602053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-192
               

               
Cow position:
               
chrX:36283319-36283125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chrX:11633647-11633457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 47
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chrX:19019139-19019334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 75
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chrX:42461777-42461968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
60, 47
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chrX:46072853-46073044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chrX:16541704-16541899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
47, 178
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chrX:17042660-17042466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 94
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chrX:15139578-15139770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chrX:29509474-29509669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chrX:43049316-43049117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chrX:11856395-11856202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chrX:12116013-12115809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chrX:47481769-47481570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:7497207-7497015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
72, 39
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:7721956-7721754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:9416726-9416923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
45, 52
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:14924968-14924770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:17662626-17662827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:18694957-18695151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
155, 47
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:21663272-21663079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:21665625-21665823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
47, 95
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:21672523-21672321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:27771994-27772186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:40116388-40116195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 61
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:40183376-40183580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:41166997-41167194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:42247219-42247414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
72, 44
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:42381135-42381330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:43527477-43527273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 100
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:6544222-6544025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:22822018-22821816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:35609956-35609755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:42171329-42171530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:877061-877255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:917398-917601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:1616077-1616283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:3654575-3654372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 48
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:4632884-4633083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:5638201-5638401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:6278533-6278738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:7571870-7571674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:7718821-7718621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:8797220-8797016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
48, 176
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:8899997-8899792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:8925668-8925471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 93
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:9635218-9635413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 46
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:9997368-9997565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:10865900-10866099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 102
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:11656059-11655854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:15147220-15147418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 95
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:15485657-15485860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:16289590-16289794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:19930618-19930424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:21593255-21593051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:23497701-23497895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:23563823-23564029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:24105591-24105394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:25035412-25035619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
48, 172
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:26440811-26441012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:27442588-27442787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 66
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:27509056-27509252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:29289546-29289344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:31260660-31260862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 36
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:31948970-31949163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:32020152-32020354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:33020451-33020254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:34401965-34401765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
45, 52
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:34441484-34441682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
46, 94
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:34754222-34754424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:35042192-35041987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:37836556-37836354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:38006797-38007000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
48, 61
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:38227126-38227322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:38964072-38963877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:38967615-38967418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:40480901-40481103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
54, 175
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:40557714-40557908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 30
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:40647953-40647746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:41199072-41198872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
94, 14
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:42874951-42874746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
60, 47
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:42994580-42994382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:46532534-46532741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
45, 176
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:46770992-46771204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 117
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chrX:48010568-48010362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:151872-151668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
47, 76
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:2467853-2467646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:3653726-3653530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:9201517-9201314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
48, 61
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:10412019-10412219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:12249769-12249572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
54, 40
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:16416475-16416275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
45, 33
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:17231700-17231501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:20151817-20151617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 97
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:20710042-20709837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:23514048-23514251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:25338152-25337946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:26875916-26876114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:27680362-27680170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:28134313-28134113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 48
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:33493744-33493542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:33639940-33639738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
37, 114
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:33855266-33855466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
48, 54
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:38094554-38094758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 141
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:38439445-38439240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:38549414-38549215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
72, 49
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:39558383-39558581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:42011246-42011047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chrX:42492550-42492743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chrX:36961609-36961435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
47, 170
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chrX:15007183-15007377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 123
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chrX:7351267-7351067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
45, 145
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chrX:13868669-13868462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 180
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chrX:19188904-19188704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
4-204
               

               
Cow position:
               
chrX:40452243-40452445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 46
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chrX:11073226-11073424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
45, 34
               

               
Conread position:
               
5-202
               

               
Cow position:
               
chrX:27516494-27516302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
5-202
               

               
Cow position:
               
chrX:35542860-35542661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
6-189
               

               
Cow position:
               
chrX:37781147-37781330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 43
               

               
Conread position:
               
6-203
               

               
Cow position:
               
chrX:41403943-41403744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 189
               

               
Conread position:
               
6-203
               

               
Cow position:
               
chrX:41410491-41410292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 189
               

               
Conread position:
               
6-203
               

               
Cow position:
               
chrX:44834845-44835047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
6-204
               

               
Cow position:
               
chrX:4123802-4123603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 64
               

               
Conread position:
               
6-204
               

               
Cow position:
               
chrX:8731051-8730847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
9-184
               

               
Cow position:
               
chrX:27174957-27174782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chrX:22482725-22482920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chrX:27590074-27590271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
9-204
               

               
Cow position:
               
chrX:11581906-11581702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 81
               

               
Conread position:
               
9-204
               

               
Cow position:
               
chrX:30962912-30963104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
9-204
               

               
Cow position:
               
chrX:47344255-47344062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
41, 26
               

               
Conread position:
               
9-205
               

               
Cow position:
               
chrX:22813029-22812829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
32, 173
               

               
Conread position:
               
9-205
               

               
Cow position:
               
chrX:38642223-38642027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
9-208
               

               
Cow position:
               
chrX:36975911-36975713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
11-159
               

               
Cow position:
               
chrX:40035484-40035631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
11-175
               

               
Cow position:
               
chrX:17908328-17908487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
11-197
               

               
Cow position:
               
chrX:46429899-46430087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
11-200
               

               
Cow position:
               
chrX:19015397-19015214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
11-201
               

               
Cow position:
               
chrX:7513473-7513287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 46
               

               
Conread position:
               
11-202
               

               
Cow position:
               
chrX:34502881-34502690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
11-203
               

               
Cow position:
               
chrX:46722775-46722972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chrX:13382289-13382092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 170
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chrX:14883999-14884194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
48, 39
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chrX:27394061-27394246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chrX:35273314-35273112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chrX:35387943-35388139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
48, 39
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chrX:38218669-38218483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 39
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chrX:40269447-40269244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 39
               

               
Conread position:
               
11-204
               

               
Cow position:
               
chrX:42338983-42339168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
148, 39
               

               
Conread position:
               
12-201
               

               
Cow position:
               
chrX:754921-754729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
12-201
               

               
Cow position:
               
chrX:17725932-17725749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
12-202
               

               
Cow position:
               
chrX:17794941-17794755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 52
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chrX:678608-678800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
147, 62
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chrX:7646213-7646026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chrX:11938969-11939156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 38
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chrX:17541922-17541732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chrX:27514833-27514636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 21
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chrX:41743870-41743681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chrX:45373329-45373524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
29, 143
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chrX:45414342-45414532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chrX:619046-619241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 52
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chrX:4043896-4044083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
63, 38
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chrX:9855263-9855067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chrX:13323039-13323233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chrX:20582986-20582797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chrX:31436436-31436247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 52
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chrX:34543746-34543554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
13-204
               

               
Cow position:
               
chrX:31442864-31443053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chrX:37843679-37843489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 36
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chrX:42469986-42470168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 49
               

               
Conread position:
               
14-204
               

               
Cow position:
               
chrX:25238130-25237946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 22
               

               
Conread position:
               
15-201
               

               
Cow position:
               
chrX:13265668-13265849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
16-159
               

               
Cow position:
               
chrX:31311983-31311839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
16-198
               

               
Cow position:
               
chrX:22074754-22074574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
16-204
               

               
Cow position:
               
chrX:23583516-23583326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
16-205
               

               
Cow position:
               
chrX:28111461-28111273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
18-205
               

               
Cow position:
               
chrX:6640082-6639891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
20-203
               

               
Cow position:
               
chrX:42855365-42855177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
20-204
               

               
Cow position:
               
chrX:27431964-27432151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
20-204
               

               
Cow position:
               
chrX:35268832-35268658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
21-205
               

               
Cow position:
               
chrX:32978308-32978489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
23-203
               

               
Cow position:
               
chrX:15596991-15596807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
28, 165
               

               
Conread position:
               
26-203
               

               
Cow position:
               
chrX:14900779-14900952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
26-204
               

               
Cow position:
               
chrX:45502095-45501916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
26-205
               

               
Cow position:
               
chrX:26625726-26625910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
33, 24
               

               
Conread position:
               
27-201
               

               
Cow position:
               
chrX:18812196-18812029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
40-202
               

               
Cow position:
               
chrX:42086793-42086632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
40-202
               

               
Cow position:
               
chrX:48536732-48536895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
40-205
               

               
Cow position:
               
chrX:42499096-42499262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
46-205
               

               
Cow position:
               
chrX:9252253-9252411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
56-203
               

               
Cow position:
               
chrX:5900369-5900226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
56-204
               

               
Cow position:
               
chrX:7382237-7382091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
56-204
               

               
Cow position:
               
chrX:19690135-19689986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
58-193
               

               
Cow position:
               
chrX:23091793-23091660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
58-204
               

               
Cow position:
               
chrX:2523813-2523962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
62-201
               

               
Cow position:
               
chrX:20168115-20167975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
74-203
               

               
Cow position:
               
chrX:33519516-33519386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
83-204
               

               
Cow position:
               
chrX:9651156-9651278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               
Show alignments to all cow chromosomes.