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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8012I13.3
        

               
Conread position:
               
1-251
               

               
Cow position:
               
chr1:102730496-102730747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
135, 52
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:68897010-68897257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
155, 19
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr1:7453179-7452917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 201
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr1:21561282-21561010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
143, 22
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr1:38706589-38706861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
153, 92
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr1:95835533-95835805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
133, 52
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr1:90864020-90864393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr1:55704980-55705367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr1:74083918-74084314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
47, 192
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr1:83072706-83072326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr1:23101933-23101691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr1:96304715-96305088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
162, 26
               

               
Conread position:
               
3-329
               

               
Cow position:
               
chr1:5776413-5776078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 178
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chr1:77620813-77620459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
57, 183
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr1:1980852-1981231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr1:70094598-70094224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
153, 47
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr1:82337514-82337898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
28, 154
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr1:85339634-85339400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr1:1489141-1489415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
27, 185
               

               
Conread position:
               
4-384
               

               
Cow position:
               
chr1:10633302-10632931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
5-269
               

               
Cow position:
               
chr1:99604929-99605190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
44, 89
               

               
Conread position:
               
5-384
               

               
Cow position:
               
chr1:85867859-85867481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 49
               

               
Conread position:
               
6-377
               

               
Cow position:
               
chr1:76612873-76613237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
7-263
               

               
Cow position:
               
chr1:69411442-69411697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
7-384
               

               
Cow position:
               
chr1:78092296-78091915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
8-384
               

               
Cow position:
               
chr1:20104523-20104151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 139
               

               
Conread position:
               
9-269
               

               
Cow position:
               
chr1:72422152-72422412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
10-176
               

               
Cow position:
               
chr1:83066580-83066741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
144, 40
               

               
Conread position:
               
10-272
               

               
Cow position:
               
chr1:95153126-95152864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
139, 43
               

               
Conread position:
               
10-383
               

               
Cow position:
               
chr1:6102649-6103029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 38
               

               
Conread position:
               
11-244
               

               
Cow position:
               
chr1:24793040-24792809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
143, 18
               

               
Conread position:
               
12-217
               

               
Cow position:
               
chr1:81615900-81615703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
137, 12
               

               
Conread position:
               
12-278
               

               
Cow position:
               
chr1:40212095-40212345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 46
               

               
Conread position:
               
14-346
               

               
Cow position:
               
chr1:48213899-48214241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
124, 37
               

               
Conread position:
               
14-384
               

               
Cow position:
               
chr1:42175984-42175607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 143
               

               
Conread position:
               
16-379
               

               
Cow position:
               
chr1:48581378-48581019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
17-273
               

               
Cow position:
               
chr1:87083878-87083621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
19-282
               

               
Cow position:
               
chr1:49334151-49334409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
20-384
               

               
Cow position:
               
chr1:14759109-14759469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
21-378
               

               
Cow position:
               
chr1:64803853-64804213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
128, 168
               

               
Conread position:
               
22-234
               

               
Cow position:
               
chr1:102424044-102423825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
22-384
               

               
Cow position:
               
chr1:72034684-72035043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
23-384
               

               
Cow position:
               
chr1:74929464-74929831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
37, 166
               

               
Conread position:
               
25-275
               

               
Cow position:
               
chr1:99322336-99322572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
141, 25
               

               
Conread position:
               
25-282
               

               
Cow position:
               
chr1:24530742-24530485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 120
               

               
Conread position:
               
25-288
               

               
Cow position:
               
chr1:83973002-83972741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 5
               

               
Conread position:
               
25-355
               

               
Cow position:
               
chr1:17875478-17875799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
140, 29
               

               
Conread position:
               
26-239
               

               
Cow position:
               
chr1:43296479-43296692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
118, 27
               

               
Conread position:
               
26-373
               

               
Cow position:
               
chr1:63595814-63596160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
26-384
               

               
Cow position:
               
chr1:54206579-54206936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
27-317
               

               
Cow position:
               
chr1:816159-816462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
113, 212
               

               
Conread position:
               
27-377
               

               
Cow position:
               
chr1:635440-635795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
7, 164
               

               
Conread position:
               
27-384
               

               
Cow position:
               
chr1:79591344-79590987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
27-385
               

               
Cow position:
               
chr1:43352417-43352775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
27-401
               

               
Cow position:
               
chr1:46030132-46030489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 32
               

               
Conread position:
               
28-249
               

               
Cow position:
               
chr1:58420435-58420220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
136, 110
               

               
Conread position:
               
28-331
               

               
Cow position:
               
chr1:71770072-71770383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
119, 24
               

               
Conread position:
               
28-332
               

               
Cow position:
               
chr1:67919364-67919067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
236, 29
               

               
Conread position:
               
28-368
               

               
Cow position:
               
chr1:648563-648223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
60, 25
               

               
Conread position:
               
29-331
               

               
Cow position:
               
chr1:28058731-28059033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
29-365
               

               
Cow position:
               
chr1:38419259-38418934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
29-381
               

               
Cow position:
               
chr1:55819273-55818945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr1:5023501-5023873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 28
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr1:31272210-31272558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr1:49433022-49433379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 261
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr1:56477821-56477473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
235, 98
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr1:70227455-70227810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
118, 158
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr1:86279653-86279294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 130
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr1:97954247-97954576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
235, 98
               

               
Conread position:
               
30-384
               

               
Cow position:
               
chr1:46035709-46036077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
30-384
               

               
Cow position:
               
chr1:97611438-97611770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
150, 56
               

               
Conread position:
               
30-387
               

               
Cow position:
               
chr1:65028756-65028409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
31-228
               

               
Cow position:
               
chr1:42797108-42796915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
31-234
               

               
Cow position:
               
chr1:90879507-90879704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
31-238
               

               
Cow position:
               
chr1:79178863-79178656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
31-251
               

               
Cow position:
               
chr1:69378368-69378584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
31-283
               

               
Cow position:
               
chr1:27959312-27959568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
21, 195
               

               
Conread position:
               
31-290
               

               
Cow position:
               
chr1:852408-852145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 157
               

               
Conread position:
               
31-317
               

               
Cow position:
               
chr1:10029971-10030258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
31-347
               

               
Cow position:
               
chr1:73584177-73584491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
123, 16
               

               
Conread position:
               
31-365
               

               
Cow position:
               
chr1:38277793-38278132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
31-368
               

               
Cow position:
               
chr1:71399528-71399184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
116, 146
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr1:6304640-6304974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
9, 100
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr1:43357770-43358123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 22
               

               
Conread position:
               
31-379
               

               
Cow position:
               
chr1:41137918-41138244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
31-379
               

               
Cow position:
               
chr1:81477629-81477981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
113, 323
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr1:23186570-23186914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
228, 18
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr1:33206640-33206988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
113, 234
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr1:55230206-55229867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
228, 33
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr1:61885150-61884802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 124
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr1:62519604-62519240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 162
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr1:70344274-70343924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
105, 23
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr1:81228104-81228457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
177, 22
               

               
Conread position:
               
32-216
               

               
Cow position:
               
chr1:59551671-59551487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
32-273
               

               
Cow position:
               
chr1:60045221-60044981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 139
               

               
Conread position:
               
32-309
               

               
Cow position:
               
chr1:102529620-102529899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
112, 164
               

               
Conread position:
               
32-345
               

               
Cow position:
               
chr1:74751395-74751713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
32-346
               

               
Cow position:
               
chr1:60962223-60961905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
32-378
               

               
Cow position:
               
chr1:73545676-73546013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
117, 21
               

               
Conread position:
               
32-378
               

               
Cow position:
               
chr1:101866267-101866607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
44, 32
               

               
Conread position:
               
32-384
               

               
Cow position:
               
chr1:4691821-4691477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
132, 119
               

               
Conread position:
               
32-384
               

               
Cow position:
               
chr1:44075493-44075828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
32-384
               

               
Cow position:
               
chr1:101860251-101860606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
32-463
               

               
Cow position:
               
chr1:71119753-71119330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
130, 25
               

               
Conread position:
               
33-173
               

               
Cow position:
               
chr1:34952469-34952335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
33-238
               

               
Cow position:
               
chr1:99637019-99637226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
111, 154
               

               
Conread position:
               
33-249
               

               
Cow position:
               
chr1:46939643-46939868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
33-255
               

               
Cow position:
               
chr1:24656487-24656256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
33-260
               

               
Cow position:
               
chr1:71945854-71946078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
105, 20
               

               
Conread position:
               
33-273
               

               
Cow position:
               
chr1:36080056-36079816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
33-366
               

               
Cow position:
               
chr1:63139075-63138742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
33-378
               

               
Cow position:
               
chr1:54156504-54156843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
33-378
               

               
Cow position:
               
chr1:84905830-84906176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
33-378
               

               
Cow position:
               
chr1:95296361-95296721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 167
               

               
Conread position:
               
33-384
               

               
Cow position:
               
chr1:13810883-13810535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
33-384
               

               
Cow position:
               
chr1:51446113-51445762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
231, 31
               

               
Conread position:
               
33-384
               

               
Cow position:
               
chr1:87198054-87197710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
33-384
               

               
Cow position:
               
chr1:99642140-99642483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
34-266
               

               
Cow position:
               
chr1:81364493-81364260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
112, 30
               

               
Conread position:
               
34-328
               

               
Cow position:
               
chr1:48618016-48618301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
34-384
               

               
Cow position:
               
chr1:19144710-19145040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
34-411
               

               
Cow position:
               
chr1:14308800-14309183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
120, 19
               

               
Conread position:
               
35-205
               

               
Cow position:
               
chr1:70476522-70476690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
35-225
               

               
Cow position:
               
chr1:75227095-75227279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
35-247
               

               
Cow position:
               
chr1:102523410-102523622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
120, 72
               

               
Conread position:
               
35-252
               

               
Cow position:
               
chr1:98380064-98380283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 135
               

               
Conread position:
               
35-283
               

               
Cow position:
               
chr1:101439259-101439503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
173, 59
               

               
Conread position:
               
35-328
               

               
Cow position:
               
chr1:6287376-6287086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
127, 14
               

               
Conread position:
               
35-349
               

               
Cow position:
               
chr1:92580988-92580669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
35-352
               

               
Cow position:
               
chr1:49077094-49077419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
102, 29
               

               
Conread position:
               
35-382
               

               
Cow position:
               
chr1:101835045-101834709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
35-384
               

               
Cow position:
               
chr1:6228353-6228702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
69, 39
               

               
Conread position:
               
35-384
               

               
Cow position:
               
chr1:72105628-72105295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
229, 18
               

               
Conread position:
               
35-384
               

               
Cow position:
               
chr1:84103830-84104171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
36-378
               

               
Cow position:
               
chr1:95638065-95637721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
37, 268
               

               
Conread position:
               
36-384
               

               
Cow position:
               
chr1:36880517-36880161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 20
               

               
Conread position:
               
36-394
               

               
Cow position:
               
chr1:86113170-86113530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
36-411
               

               
Cow position:
               
chr1:46693423-46693797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 17
               

               
Conread position:
               
37-214
               

               
Cow position:
               
chr1:99031750-99031927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
98, 28
               

               
Conread position:
               
37-247
               

               
Cow position:
               
chr1:1380227-1380016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
37-265
               

               
Cow position:
               
chr1:32014414-32014199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
37-282
               

               
Cow position:
               
chr1:75411610-75411856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
37-327
               

               
Cow position:
               
chr1:50432253-50432548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
112, 141
               

               
Conread position:
               
37-327
               

               
Cow position:
               
chr1:79004204-79003913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
117, 154
               

               
Conread position:
               
37-328
               

               
Cow position:
               
chr1:83659049-83659342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
145, 16
               

               
Conread position:
               
37-368
               

               
Cow position:
               
chr1:22824135-22823804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
101, 16
               

               
Conread position:
               
37-378
               

               
Cow position:
               
chr1:7748443-7748109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
107, 20
               

               
Conread position:
               
37-379
               

               
Cow position:
               
chr1:78794007-78794337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
37-383
               

               
Cow position:
               
chr1:22526106-22525760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 112
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr1:28563335-28563686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr1:53374654-53374313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
117, 27
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr1:87094983-87095348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
37-385
               

               
Cow position:
               
chr1:18936611-18936948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
145, 16
               

               
Conread position:
               
38-244
               

               
Cow position:
               
chr1:20537427-20537227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
148, 15
               

               
Conread position:
               
38-249
               

               
Cow position:
               
chr1:47242233-47242446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
137, 119
               

               
Conread position:
               
38-283
               

               
Cow position:
               
chr1:150699-150943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr1:484231-484577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
20, 116
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr1:7752608-7752275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
28, 57
               

               
Conread position:
               
38-382
               

               
Cow position:
               
chr1:11172595-11172259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
103, 108
               

               
Conread position:
               
38-382
               

               
Cow position:
               
chr1:33330876-33331200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
39-285
               

               
Cow position:
               
chr1:85818473-85818231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 41
               

               
Conread position:
               
39-321
               

               
Cow position:
               
chr1:52661950-52662229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
39-347
               

               
Cow position:
               
chr1:68217141-68217444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
149, 14
               

               
Conread position:
               
39-384
               

               
Cow position:
               
chr1:20002011-20002358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
39-384
               

               
Cow position:
               
chr1:55428726-55429073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
25, 296
               

               
Conread position:
               
39-386
               

               
Cow position:
               
chr1:71228319-71227967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
40-244
               

               
Cow position:
               
chr1:22828348-22828548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
125, 106
               

               
Conread position:
               
40-343
               

               
Cow position:
               
chr1:10941874-10942174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
219, 24
               

               
Conread position:
               
40-343
               

               
Cow position:
               
chr1:10964512-10964212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
219, 24
               

               
Conread position:
               
40-368
               

               
Cow position:
               
chr1:874886-874549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
40-383
               

               
Cow position:
               
chr1:4701447-4701789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
40-383
               

               
Cow position:
               
chr1:61391570-61391905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chr1:42397972-42398314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
146, 24
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chr1:50930756-50931093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 24
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chr1:51394643-51394304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
224, 119
               

               
Conread position:
               
41-238
               

               
Cow position:
               
chr1:31846217-31846028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
116, 13
               

               
Conread position:
               
41-240
               

               
Cow position:
               
chr1:5479433-5479634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
9, 146
               

               
Conread position:
               
41-254
               

               
Cow position:
               
chr1:12848295-12848079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 136
               

               
Conread position:
               
41-289
               

               
Cow position:
               
chr1:72092399-72092647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
123, 103
               

               
Conread position:
               
41-374
               

               
Cow position:
               
chr1:3605669-3605985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
41-384
               

               
Cow position:
               
chr1:54199173-54199501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
42-384
               

               
Cow position:
               
chr1:68863243-68862916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
43-241
               

               
Cow position:
               
chr1:77098903-77099095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
43-251
               

               
Cow position:
               
chr1:89835935-89835732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 103
               

               
Conread position:
               
43-351
               

               
Cow position:
               
chr1:3815461-3815775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
43-355
               

               
Cow position:
               
chr1:29626690-29627000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
103, 14
               

               
Conread position:
               
43-366
               

               
Cow position:
               
chr1:39426796-39427101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
221, 10
               

               
Conread position:
               
43-384
               

               
Cow position:
               
chr1:25383890-25383545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 21
               

               
Conread position:
               
44-255
               

               
Cow position:
               
chr1:61146338-61146131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
44-383
               

               
Cow position:
               
chr1:87072913-87072581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
181, 9
               

               
Conread position:
               
44-384
               

               
Cow position:
               
chr1:70422525-70422187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
44-386
               

               
Cow position:
               
chr1:42541814-42541476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
45-249
               

               
Cow position:
               
chr1:54569920-54569715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
99, 19
               

               
Conread position:
               
45-366
               

               
Cow position:
               
chr1:60856540-60856217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
101, 19
               

               
Conread position:
               
45-379
               

               
Cow position:
               
chr1:69551255-69551596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
45-384
               

               
Cow position:
               
chr1:89509708-89510039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 83
               

               
Conread position:
               
46-265
               

               
Cow position:
               
chr1:100573409-100573626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
46-272
               

               
Cow position:
               
chr1:66752414-66752636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
218, 11
               

               
Conread position:
               
46-348
               

               
Cow position:
               
chr1:6166451-6166161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
146, 75
               

               
Conread position:
               
46-368
               

               
Cow position:
               
chr1:4391049-4391384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
46-384
               

               
Cow position:
               
chr1:7443201-7442865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
88, 144
               

               
Conread position:
               
46-384
               

               
Cow position:
               
chr1:24132846-24133175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 17
               

               
Conread position:
               
46-384
               

               
Cow position:
               
chr1:41697273-41696941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
47-249
               

               
Cow position:
               
chr1:65030287-65030084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
47-249
               

               
Cow position:
               
chr1:84595108-84594905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 10
               

               
Conread position:
               
47-274
               

               
Cow position:
               
chr1:13157411-13157176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 10
               

               
Conread position:
               
47-289
               

               
Cow position:
               
chr1:15103104-15102865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 163
               

               
Conread position:
               
47-332
               

               
Cow position:
               
chr1:82870298-82870591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
100, 17
               

               
Conread position:
               
47-334
               

               
Cow position:
               
chr1:51609595-51609306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
130, 17
               

               
Conread position:
               
47-368
               

               
Cow position:
               
chr1:88397625-88397941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 26
               

               
Conread position:
               
47-384
               

               
Cow position:
               
chr1:101280520-101280833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
48-245
               

               
Cow position:
               
chr1:11708808-11708997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
48-256
               

               
Cow position:
               
chr1:50585659-50585868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
170, 104
               

               
Conread position:
               
48-297
               

               
Cow position:
               
chr1:17056208-17055960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
16, 104
               

               
Conread position:
               
48-342
               

               
Cow position:
               
chr1:35671754-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
48-346
               

               
Cow position:
               
chr1:53403001-53402702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
96, 129
               

               
Conread position:
               
48-366
               

               
Cow position:
               
chr1:91755499-91755192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
105, 17
               

               
Conread position:
               
48-367
               

               
Cow position:
               
chr1:85688400-85688089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
96, 5
               

               
Conread position:
               
48-373
               

               
Cow position:
               
chr1:10617107-10616774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
129, 16
               

               
Conread position:
               
48-378
               

               
Cow position:
               
chr1:31765154-31765498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
140, 16
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr1:196789-197121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 92
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr1:92369967-92369615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
110, 25
               

               
Conread position:
               
49-250
               

               
Cow position:
               
chr1:5872557-5872763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
49-259
               

               
Cow position:
               
chr1:95704021-95703813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
49-274
               

               
Cow position:
               
chr1:8788506-8788282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
123, 42
               

               
Conread position:
               
49-343
               

               
Cow position:
               
chr1:22836616-22836316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
49-343
               

               
Cow position:
               
chr1:77232352-77232650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
49-365
               

               
Cow position:
               
chr1:102305931-102306243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
215, 78
               

               
Conread position:
               
49-377
               

               
Cow position:
               
chr1:24908826-24909164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
5, 32
               

               
Conread position:
               
49-378
               

               
Cow position:
               
chr1:34160045-34159726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
49-379
               

               
Cow position:
               
chr1:53651197-53650902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 106
               

               
Conread position:
               
49-383
               

               
Cow position:
               
chr1:86110528-86110847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
49-383
               

               
Cow position:
               
chr1:94226327-94226667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
12, 207
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr1:15547681-15547351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
255, 78
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr1:43311553-43311893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr1:68817585-68817916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 37
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr1:69678107-69678439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
45, 182
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr1:92996671-92997015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
49-389
               

               
Cow position:
               
chr1:77986200-77986545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
82, 129
               

               
Conread position:
               
50-209
               

               
Cow position:
               
chr1:39095699-39095545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
50-213
               

               
Cow position:
               
chr1:95976548-95976386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
126, 93
               

               
Conread position:
               
50-216
               

               
Cow position:
               
chr1:73644293-73644457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
50-224
               

               
Cow position:
               
chr1:6874030-6873853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
99, 134
               

               
Conread position:
               
50-224
               

               
Cow position:
               
chr1:47969456-47969289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
50-228
               

               
Cow position:
               
chr1:79169937-79170115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
50-230
               

               
Cow position:
               
chr1:89146657-89146838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
104, 168
               

               
Conread position:
               
50-238
               

               
Cow position:
               
chr1:30469998-30469809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
50-241
               

               
Cow position:
               
chr1:79631319-79631510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 136
               

               
Conread position:
               
50-244
               

               
Cow position:
               
chr1:97321829-97322029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 172
               

               
Conread position:
               
50-247
               

               
Cow position:
               
chr1:4329694-4329881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
50-247
               

               
Cow position:
               
chr1:91937928-91937735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
96, 108
               

               
Conread position:
               
50-247
               

               
Cow position:
               
chr1:98415808-98415606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
94, 140
               

               
Conread position:
               
50-249
               

               
Cow position:
               
chr1:39683926-39684127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
50-249
               

               
Cow position:
               
chr1:89297891-89298093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
50-249
               

               
Cow position:
               
chr1:89301500-89301702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
50-252
               

               
Cow position:
               
chr1:15875874-15875674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
114, 94
               

               
Conread position:
               
50-252
               

               
Cow position:
               
chr1:70416546-70416746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
50-254
               

               
Cow position:
               
chr1:82538142-82537942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
143, 77
               

               
Conread position:
               
50-255
               

               
Cow position:
               
chr1:63461092-63460889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
50-257
               

               
Cow position:
               
chr1:525021-524817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
50-257
               

               
Cow position:
               
chr1:47467863-47468072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 80
               

               
Conread position:
               
50-260
               

               
Cow position:
               
chr1:70483121-70483328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
50-271
               

               
Cow position:
               
chr1:95156749-95156969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
50-272
               

               
Cow position:
               
chr1:1496313-1496539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
50-272
               

               
Cow position:
               
chr1:6731394-6731174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
115, 95
               

               
Conread position:
               
50-274
               

               
Cow position:
               
chr1:4444623-4444851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 138
               

               
Conread position:
               
50-282
               

               
Cow position:
               
chr1:5751530-5751296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
94, 77
               

               
Conread position:
               
50-282
               

               
Cow position:
               
chr1:98912224-98911991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 174
               

               
Conread position:
               
50-287
               

               
Cow position:
               
chr1:20871342-20871581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
77, 14
               

               
Conread position:
               
50-287
               

               
Cow position:
               
chr1:73719685-73719439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
83, 7
               

               
Conread position:
               
50-302
               

               
Cow position:
               
chr1:79630702-79630936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
50-307
               

               
Cow position:
               
chr1:85772220-85771968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
5, 23
               

               
Conread position:
               
50-309
               

               
Cow position:
               
chr1:71789934-71790192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
142, 14
               

               
Conread position:
               
50-321
               

               
Cow position:
               
chr1:81481170-81481439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 89
               

               
Conread position:
               
50-327
               

               
Cow position:
               
chr1:62235243-62235508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
50-328
               

               
Cow position:
               
chr1:101507565-101507296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
214, 65
               

               
Conread position:
               
50-330
               

               
Cow position:
               
chr1:46143252-46143526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
50-342
               

               
Cow position:
               
chr1:62998016-62997725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
85, 175
               

               
Conread position:
               
50-344
               

               
Cow position:
               
chr1:78097138-78096847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 15
               

               
Conread position:
               
50-345
               

               
Cow position:
               
chr1:101159144-101158838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
50-348
               

               
Cow position:
               
chr1:48606248-48605949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
138, 14
               

               
Conread position:
               
50-348
               

               
Cow position:
               
chr1:73457878-73458175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
11, 190
               

               
Conread position:
               
50-352
               

               
Cow position:
               
chr1:21954013-21954317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
201, 26
               

               
Conread position:
               
50-360
               

               
Cow position:
               
chr1:90904540-90904847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 98
               

               
Conread position:
               
50-365
               

               
Cow position:
               
chr1:37726200-37726513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 14
               

               
Conread position:
               
50-366
               

               
Cow position:
               
chr1:724954-724638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
50-377
               

               
Cow position:
               
chr1:43855504-43855191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
191, 77
               

               
Conread position:
               
50-377
               

               
Cow position:
               
chr1:97232186-97231850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr1:5010619-5010948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
81, 14
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr1:22943812-22944137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr1:25735083-25734757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
99, 51
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr1:63390549-63390882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
104, 126
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr1:76740457-76740790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
93, 120
               

               
Conread position:
               
50-379
               

               
Cow position:
               
chr1:10716719-10716390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
77, 20
               

               
Conread position:
               
50-379
               

               
Cow position:
               
chr1:23998708-23999033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
50-379
               

               
Cow position:
               
chr1:56225996-56225681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
214, 7
               

               
Conread position:
               
50-379
               

               
Cow position:
               
chr1:56618441-56618763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 96
               

               
Conread position:
               
50-381
               

               
Cow position:
               
chr1:91651130-91651474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
12, 140
               

               
Conread position:
               
50-382
               

               
Cow position:
               
chr1:42482414-42482087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
50-382
               

               
Cow position:
               
chr1:82936389-82936701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr1:21787539-21787214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
214, 55
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr1:31934719-31934395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
210, 77
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:261249-261596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:1878237-1877911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 14
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:4243115-4243460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 137
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:12222388-12222722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 129
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:19481884-19482192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
6, 46
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:19970379-19970718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
81, 44
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:20667535-20667859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
214, 44
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:21955157-21955490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
114, 135
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:22729269-22728934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 33
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:29935176-29935495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
254, 54
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:33720319-33720000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
96, 137
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:35600075-35600415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
94, 140
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:40600240-40599926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
216, 45
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:42887065-42887382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 91
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:45555580-45555247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 45
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:51417979-51417655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:53623172-53622842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 82
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:61741749-61742085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 39
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:64572729-64572396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 99
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:66138537-66138202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
70, 138
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:70538821-70538490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 92
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:72068617-72068956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 26
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:78857110-78857438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 230
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:79844693-79844349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 14
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:97755716-97755399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
215, 95
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr1:97820899-97820572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 138
               

               
Conread position:
               
50-385
               

               
Cow position:
               
chr1:63434582-63434925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
10, 247
               

               
Conread position:
               
50-385
               

               
Cow position:
               
chr1:69539900-69539578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
215, 85
               

               
Conread position:
               
50-397
               

               
Cow position:
               
chr1:22730950-22730617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
5, 96
               

               
Conread position:
               
51-220
               

               
Cow position:
               
chr1:53474362-53474202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
51-225
               

               
Cow position:
               
chr1:19384243-19384415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
51-237
               

               
Cow position:
               
chr1:30028018-30028200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
51-241
               

               
Cow position:
               
chr1:3679312-3679493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 113
               

               
Conread position:
               
51-251
               

               
Cow position:
               
chr1:47966805-47967008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
51-272
               

               
Cow position:
               
chr1:100823253-100823031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
95, 6
               

               
Conread position:
               
51-378
               

               
Cow position:
               
chr1:69694793-69695103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
204, 41
               

               
Conread position:
               
51-383
               

               
Cow position:
               
chr1:59519125-59518804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
213, 91
               

               
Conread position:
               
51-383
               

               
Cow position:
               
chr1:86682353-86682679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 96
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr1:57575549-57575876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
52-237
               

               
Cow position:
               
chr1:56749028-56748841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
52-238
               

               
Cow position:
               
chr1:100800556-100800741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
164, 84
               

               
Conread position:
               
52-255
               

               
Cow position:
               
chr1:4294558-4294355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:89158495-89158742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
212, 39
               

               
Conread position:
               
52-317
               

               
Cow position:
               
chr1:100753745-100753478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 138
               

               
Conread position:
               
52-347
               

               
Cow position:
               
chr1:61012518-61012229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
210, 12
               

               
Conread position:
               
52-352
               

               
Cow position:
               
chr1:78079935-78079635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
109, 12
               

               
Conread position:
               
52-368
               

               
Cow position:
               
chr1:21508609-21508292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
52-378
               

               
Cow position:
               
chr1:36998395-36998084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
52-383
               

               
Cow position:
               
chr1:73960899-73960589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 39
               

               
Conread position:
               
52-384
               

               
Cow position:
               
chr1:99609582-99609250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
14, 102
               

               
Conread position:
               
52-388
               

               
Cow position:
               
chr1:66898281-66898619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
75, 212
               

               
Conread position:
               
53-196
               

               
Cow position:
               
chr1:61560285-61560431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
53-235
               

               
Cow position:
               
chr1:72069892-72070083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
53-241
               

               
Cow position:
               
chr1:84782536-84782726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
93, 133
               

               
Conread position:
               
53-249
               

               
Cow position:
               
chr1:82336882-82336695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
53-251
               

               
Cow position:
               
chr1:64811449-64811251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
93, 169
               

               
Conread position:
               
53-252
               

               
Cow position:
               
chr1:94823177-94823378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
94, 124
               

               
Conread position:
               
53-255
               

               
Cow position:
               
chr1:25021866-25022064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
112, 88
               

               
Conread position:
               
53-255
               

               
Cow position:
               
chr1:85622744-85622540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
96, 134
               

               
Conread position:
               
53-282
               

               
Cow position:
               
chr1:79846035-79846268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
91, 124
               

               
Conread position:
               
53-285
               

               
Cow position:
               
chr1:73020450-73020682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
91, 38
               

               
Conread position:
               
53-290
               

               
Cow position:
               
chr1:83024955-83025190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 19
               

               
Conread position:
               
53-298
               

               
Cow position:
               
chr1:76037300-76037549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 135
               

               
Conread position:
               
53-309
               

               
Cow position:
               
chr1:43286541-43286301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
214, 39
               

               
Conread position:
               
53-321
               

               
Cow position:
               
chr1:92197666-92197398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
53-328
               

               
Cow position:
               
chr1:80584642-80584369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
53-334
               

               
Cow position:
               
chr1:3942004-3942276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 93
               

               
Conread position:
               
53-339
               

               
Cow position:
               
chr1:6394771-6394486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
53-348
               

               
Cow position:
               
chr1:47790456-47790747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
211, 74
               

               
Conread position:
               
53-352
               

               
Cow position:
               
chr1:65103841-65103534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
90, 182
               

               
Conread position:
               
53-355
               

               
Cow position:
               
chr1:26895600-26895915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
206, 90
               

               
Conread position:
               
53-361
               

               
Cow position:
               
chr1:628180-627867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 133
               

               
Conread position:
               
53-365
               

               
Cow position:
               
chr1:3588597-3588900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
53-368
               

               
Cow position:
               
chr1:46031173-46030858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
103, 41
               

               
Conread position:
               
53-371
               

               
Cow position:
               
chr1:13547772-13548087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
53-376
               

               
Cow position:
               
chr1:8374241-8374561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
101, 131
               

               
Conread position:
               
53-378
               

               
Cow position:
               
chr1:52435487-52435163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:8832-8504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
13, 233
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:12464453-12464783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 89
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:29481416-29481744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
99, 11
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:34686378-34686077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:43505736-43505407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 87
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:48443979-48444311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
80, 110
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:70435198-70434886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
211, 92
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:72304190-72304488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:91065945-91066270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
211, 74
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr1:100552178-100551851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
173, 74
               

               
Conread position:
               
53-385
               

               
Cow position:
               
chr1:24777771-24778104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 152
               

               
Conread position:
               
53-397
               

               
Cow position:
               
chr1:101714328-101713983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 92
               

               
Conread position:
               
54-204
               

               
Cow position:
               
chr1:44814453-44814608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
54-218
               

               
Cow position:
               
chr1:2523175-2523011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
100, 155
               

               
Conread position:
               
54-228
               

               
Cow position:
               
chr1:53457023-53456849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
43, 153
               

               
Conread position:
               
54-254
               

               
Cow position:
               
chr1:19599149-19599349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 131
               

               
Conread position:
               
54-274
               

               
Cow position:
               
chr1:22461028-22461247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
205, 107
               

               
Conread position:
               
54-318
               

               
Cow position:
               
chr1:500387-500121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
54-378
               

               
Cow position:
               
chr1:15334100-15333773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
54-378
               

               
Cow position:
               
chr1:90975865-90976196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr1:3923593-3923912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 76
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr1:48105214-48105551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 163
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr1:57880570-57880906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr1:63530771-63530456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
15, 211
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr1:64302039-64302365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
159, 41
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr1:75745071-75744743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 32
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr1:79164871-79165203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 100
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr1:96964530-96964202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
98, 137
               

               
Conread position:
               
55-212
               

               
Cow position:
               
chr1:92578622-92578779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
55-230
               

               
Cow position:
               
chr1:101788887-101789057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
55-331
               

               
Cow position:
               
chr1:3966039-3965775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
55-378
               

               
Cow position:
               
chr1:101822293-101822612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
11, 108
               

               
Conread position:
               
56-213
               

               
Cow position:
               
chr1:80423523-80423679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
120, 96
               

               
Conread position:
               
56-247
               

               
Cow position:
               
chr1:62469267-62469080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
56-252
               

               
Cow position:
               
chr1:76518634-76518436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 101
               

               
Conread position:
               
56-270
               

               
Cow position:
               
chr1:73551293-73551515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
56-281
               

               
Cow position:
               
chr1:45315422-45315652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
56-289
               

               
Cow position:
               
chr1:55753010-55753239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
208, 85
               

               
Conread position:
               
56-332
               

               
Cow position:
               
chr1:19515408-19515680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 56
               

               
Conread position:
               
56-344
               

               
Cow position:
               
chr1:68855376-68855085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
56-364
               

               
Cow position:
               
chr1:30189366-30189049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 180
               

               
Conread position:
               
56-383
               

               
Cow position:
               
chr1:68763475-68763798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
63, 103
               

               
Conread position:
               
56-384
               

               
Cow position:
               
chr1:71295095-71295426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 36
               

               
Conread position:
               
56-384
               

               
Cow position:
               
chr1:74955823-74956139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
209, 81
               

               
Conread position:
               
56-386
               

               
Cow position:
               
chr1:100449983-100450303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
208, 38
               

               
Conread position:
               
57-238
               

               
Cow position:
               
chr1:98742224-98742050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
57-248
               

               
Cow position:
               
chr1:32035506-32035692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
57-257
               

               
Cow position:
               
chr1:55685770-55685969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
57-271
               

               
Cow position:
               
chr1:102648488-102648272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 109
               

               
Conread position:
               
57-274
               

               
Cow position:
               
chr1:68688787-68688574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
207, 72
               

               
Conread position:
               
57-282
               

               
Cow position:
               
chr1:53452729-53452520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
206, 38
               

               
Conread position:
               
57-295
               

               
Cow position:
               
chr1:49980916-49980680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
207, 83
               

               
Conread position:
               
57-302
               

               
Cow position:
               
chr1:67654117-67654356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
207, 34
               

               
Conread position:
               
57-321
               

               
Cow position:
               
chr1:70175333-70175596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
152, 78
               

               
Conread position:
               
57-328
               

               
Cow position:
               
chr1:5597004-5597271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
151, 88
               

               
Conread position:
               
57-330
               

               
Cow position:
               
chr1:33998957-33998693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
207, 86
               

               
Conread position:
               
57-330
               

               
Cow position:
               
chr1:78066335-78066602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
207, 70
               

               
Conread position:
               
57-343
               

               
Cow position:
               
chr1:26178600-26178889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
97, 129
               

               
Conread position:
               
57-343
               

               
Cow position:
               
chr1:102754058-102753776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
189, 14
               

               
Conread position:
               
57-344
               

               
Cow position:
               
chr1:86056870-86057144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 70
               

               
Conread position:
               
57-345
               

               
Cow position:
               
chr1:84811733-84812022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 90
               

               
Conread position:
               
57-348
               

               
Cow position:
               
chr1:49824857-49825151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
189, 83
               

               
Conread position:
               
57-369
               

               
Cow position:
               
chr1:7306176-7305874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
57-378
               

               
Cow position:
               
chr1:3324082-3323760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
89, 121
               

               
Conread position:
               
57-382
               

               
Cow position:
               
chr1:78811246-78810924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 90
               

               
Conread position:
               
57-383
               

               
Cow position:
               
chr1:6826084-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:14379342-14379652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
240, 89
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:16855493-16855808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
114, 75
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:20950925-20950604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
90, 206
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:34771291-34771621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:37321802-37322119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 66
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:54478524-54478207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
207, 70
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:61005349-61005679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 159
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:68618732-68619051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
129, 35
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:78838996-78838681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:81568821-81569148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 95
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:88913528-88913201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 154
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:90621298-90621627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 57
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:91023260-91023585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 37
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:93499827-93499509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 88
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr1:95558247-95557919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
58-224
               

               
Cow position:
               
chr1:43379154-43379320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
106, 118
               

               
Conread position:
               
58-230
               

               
Cow position:
               
chr1:41022623-41022455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
58-255
               

               
Cow position:
               
chr1:81473365-81473166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
86, 119
               

               
Conread position:
               
58-255
               

               
Cow position:
               
chr1:87149609-87149804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
58-262
               

               
Cow position:
               
chr1:42775113-42774915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
58-269
               

               
Cow position:
               
chr1:100852909-100852705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
205, 34
               

               
Conread position:
               
58-269
               

               
Cow position:
               
chr1:102768382-102768177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
206, 33
               

               
Conread position:
               
58-272
               

               
Cow position:
               
chr1:242759-242550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
206, 84
               

               
Conread position:
               
58-289
               

               
Cow position:
               
chr1:8287423-8287654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
206, 125
               

               
Conread position:
               
58-315
               

               
Cow position:
               
chr1:53603966-53603705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 118
               

               
Conread position:
               
58-318
               

               
Cow position:
               
chr1:57089472-57089735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
58-332
               

               
Cow position:
               
chr1:54267731-54267999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
58-344
               

               
Cow position:
               
chr1:37706762-37707051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
58-352
               

               
Cow position:
               
chr1:96558639-96558920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 129
               

               
Conread position:
               
58-373
               

               
Cow position:
               
chr1:10655684-10655378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
92, 73
               

               
Conread position:
               
58-378
               

               
Cow position:
               
chr1:65318784-65318467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
86, 130
               

               
Conread position:
               
58-383
               

               
Cow position:
               
chr1:22192977-22192647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
96, 71
               

               
Conread position:
               
58-384
               

               
Cow position:
               
chr1:3429307-3429630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
201, 86
               

               
Conread position:
               
58-384
               

               
Cow position:
               
chr1:44507175-44506850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
206, 64
               

               
Conread position:
               
59-213
               

               
Cow position:
               
chr1:90192626-90192469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
62, 129
               

               
Conread position:
               
59-255
               

               
Cow position:
               
chr1:98556912-98557108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
59-269
               

               
Cow position:
               
chr1:93590384-93590589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
59-289
               

               
Cow position:
               
chr1:90267930-90267697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
87, 131
               

               
Conread position:
               
59-316
               

               
Cow position:
               
chr1:52912686-52912948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
59, 144
               

               
Conread position:
               
59-326
               

               
Cow position:
               
chr1:57053410-57053137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
88, 127
               

               
Conread position:
               
59-328
               

               
Cow position:
               
chr1:88360091-88359819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
85, 224
               

               
Conread position:
               
59-332
               

               
Cow position:
               
chr1:52139422-52139698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
105, 46
               

               
Conread position:
               
59-342
               

               
Cow position:
               
chr1:7229479-7229766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
59-355
               

               
Cow position:
               
chr1:71665728-71666021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
95, 109
               

               
Conread position:
               
59-372
               

               
Cow position:
               
chr1:89076417-89076734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 35
               

               
Conread position:
               
59-378
               

               
Cow position:
               
chr1:31794802-31795114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
59-382
               

               
Cow position:
               
chr1:8128773-8129082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 36
               

               
Conread position:
               
59-382
               

               
Cow position:
               
chr1:20000550-20000866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
203, 63
               

               
Conread position:
               
59-382
               

               
Cow position:
               
chr1:21578016-21577693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
40, 98
               

               
Conread position:
               
59-383
               

               
Cow position:
               
chr1:49317295-49317613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
205, 67
               

               
Conread position:
               
59-383
               

               
Cow position:
               
chr1:72011616-72011926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
205, 82
               

               
Conread position:
               
59-383
               

               
Cow position:
               
chr1:102266064-102266384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
202, 86
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr1:5423527-5423854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
112, 85
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr1:7971610-7971304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
191, 53
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr1:41056886-41056566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr1:47658554-47658231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
90, 130
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr1:95101157-95100845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
315, 108
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr1:102756230-102756547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
59-385
               

               
Cow position:
               
chr1:45019600-45019926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
112, 62
               

               
Conread position:
               
59-394
               

               
Cow position:
               
chr1:81290710-81290379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 86
               

               
Conread position:
               
60-209
               

               
Cow position:
               
chr1:50906476-50906623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
60-228
               

               
Cow position:
               
chr1:10470627-10470464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
60-233
               

               
Cow position:
               
chr1:46354234-46354406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
60-235
               

               
Cow position:
               
chr1:49759749-49759572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
89, 129
               

               
Conread position:
               
60-238
               

               
Cow position:
               
chr1:14006330-14006150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
60-246
               

               
Cow position:
               
chr1:93235729-93235906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
184, 18
               

               
Conread position:
               
60-249
               

               
Cow position:
               
chr1:76474354-76474540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 94
               

               
Conread position:
               
60-251
               

               
Cow position:
               
chr1:77810558-77810743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
167, 29
               

               
Conread position:
               
60-255
               

               
Cow position:
               
chr1:31340562-31340760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 128
               

               
Conread position:
               
60-255
               

               
Cow position:
               
chr1:34001248-34001058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
103, 66
               

               
Conread position:
               
60-255
               

               
Cow position:
               
chr1:63994350-63994544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
111, 84
               

               
Conread position:
               
60-267
               

               
Cow position:
               
chr1:7966052-7965851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
205, 161
               

               
Conread position:
               
60-272
               

               
Cow position:
               
chr1:79719013-79718803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
87, 116
               

               
Conread position:
               
60-274
               

               
Cow position:
               
chr1:36688175-36688387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 35
               

               
Conread position:
               
60-296
               

               
Cow position:
               
chr1:81515444-81515202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
100, 114
               

               
Conread position:
               
60-343
               

               
Cow position:
               
chr1:41289573-41289854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
60-344
               

               
Cow position:
               
chr1:64678885-64678618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
204, 52
               

               
Conread position:
               
60-345
               

               
Cow position:
               
chr1:98583953-98583679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
175, 82
               

               
Conread position:
               
60-347
               

               
Cow position:
               
chr1:79135484-79135199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
202, 99
               

               
Conread position:
               
60-348
               

               
Cow position:
               
chr1:61846363-61846064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 141
               

               
Conread position:
               
60-349
               

               
Cow position:
               
chr1:22637220-22637507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
60-366
               

               
Cow position:
               
chr1:75250317-75250013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
87, 45
               

               
Conread position:
               
60-367
               

               
Cow position:
               
chr1:82513147-82513456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 49
               

               
Conread position:
               
60-368
               

               
Cow position:
               
chr1:71350519-71350824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
94, 134
               

               
Conread position:
               
60-378
               

               
Cow position:
               
chr1:29452128-29451810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
99, 116
               

               
Conread position:
               
60-383
               

               
Cow position:
               
chr1:16060803-16061133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
105, 77
               

               
Conread position:
               
60-383
               

               
Cow position:
               
chr1:41182041-41181729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
199, 67
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr1:11853481-11853803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
71, 35
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr1:24542365-24542699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
238, 93
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr1:35162610-35162290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
206, 48
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr1:56225671-56225349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 26
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr1:61564986-61564679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 120
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr1:85029141-85028841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
151, 59
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr1:89388548-89388226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 92
               

               
Conread position:
               
60-385
               

               
Cow position:
               
chr1:54258774-54258445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
86, 111
               

               
Conread position:
               
60-388
               

               
Cow position:
               
chr1:26934063-26934382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
68, 204
               

               
Conread position:
               
61-260
               

               
Cow position:
               
chr1:60603366-60603571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
65, 132
               

               
Conread position:
               
61-261
               

               
Cow position:
               
chr1:46886433-46886233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
61-261
               

               
Cow position:
               
chr1:71636124-71636320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
61, 82
               

               
Conread position:
               
61-272
               

               
Cow position:
               
chr1:51860360-51860568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
104, 77
               

               
Conread position:
               
61-272
               

               
Cow position:
               
chr1:77739929-77739715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
5, 116
               

               
Conread position:
               
61-289
               

               
Cow position:
               
chr1:81858697-81858927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
160, 73
               

               
Conread position:
               
61-329
               

               
Cow position:
               
chr1:48206336-48206598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
202, 30
               

               
Conread position:
               
61-378
               

               
Cow position:
               
chr1:38754121-38753809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
131, 66
               

               
Conread position:
               
61-384
               

               
Cow position:
               
chr1:62964472-62964161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 204
               

               
Conread position:
               
61-384
               

               
Cow position:
               
chr1:79640085-79640407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 86
               

               
Conread position:
               
62-247
               

               
Cow position:
               
chr1:83682969-83683152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
62-252
               

               
Cow position:
               
chr1:29671017-29671210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
62-255
               

               
Cow position:
               
chr1:78029823-78030021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
87, 132
               

               
Conread position:
               
62-258
               

               
Cow position:
               
chr1:100538729-100538548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 52
               

               
Conread position:
               
62-357
               

               
Cow position:
               
chr1:100474442-100474141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
62-382
               

               
Cow position:
               
chr1:100422023-100421719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
62-383
               

               
Cow position:
               
chr1:3607998-3607694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr1:23488300-23488626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
110, 96
               

               
Conread position:
               
63-272
               

               
Cow position:
               
chr1:97540841-97540628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
63-377
               

               
Cow position:
               
chr1:27463330-27463021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
199, 41
               

               
Conread position:
               
63-382
               

               
Cow position:
               
chr1:16766884-16767196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
84, 180
               

               
Conread position:
               
63-384
               

               
Cow position:
               
chr1:70829098-70828785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 32
               

               
Conread position:
               
64-230
               

               
Cow position:
               
chr1:92363469-92363627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
64-255
               

               
Cow position:
               
chr1:95049664-95049855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
64-270
               

               
Cow position:
               
chr1:6381977-6381767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 127
               

               
Conread position:
               
64-272
               

               
Cow position:
               
chr1:95618842-95618635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
200, 97
               

               
Conread position:
               
64-279
               

               
Cow position:
               
chr1:759211-759432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
64-283
               

               
Cow position:
               
chr1:73721565-73721342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
63, 99
               

               
Conread position:
               
64-289
               

               
Cow position:
               
chr1:41027273-41027051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
200, 75
               

               
Conread position:
               
64-332
               

               
Cow position:
               
chr1:30983291-30983556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
64-348
               

               
Cow position:
               
chr1:82880832-82880563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
200, 64
               

               
Conread position:
               
64-379
               

               
Cow position:
               
chr1:68844955-68845269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 22
               

               
Conread position:
               
64-383
               

               
Cow position:
               
chr1:58754597-58754911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 52
               

               
Conread position:
               
64-384
               

               
Cow position:
               
chr1:89449099-89448780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 77
               

               
Conread position:
               
65-302
               

               
Cow position:
               
chr1:79146614-79146852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
40, 146
               

               
Conread position:
               
65-378
               

               
Cow position:
               
chr1:100400004-100400307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 104
               

               
Conread position:
               
65-384
               

               
Cow position:
               
chr1:96081678-96081367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
65-385
               

               
Cow position:
               
chr1:55357089-55357405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
79, 172
               

               
Conread position:
               
68-332
               

               
Cow position:
               
chr1:95072540-95072264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
68-383
               

               
Cow position:
               
chr1:80311654-80311354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
70, 165
               

               
Conread position:
               
68-384
               

               
Cow position:
               
chr1:39224742-39225042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
196, 59
               

               
Conread position:
               
69-384
               

               
Cow position:
               
chr1:33409427-33409745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
83, 106
               

               
Conread position:
               
71-384
               

               
Cow position:
               
chr1:11729366-11729064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 57
               

               
Conread position:
               
71-384
               

               
Cow position:
               
chr1:77720066-77720352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
193, 57
               

               
Conread position:
               
72-212
               

               
Cow position:
               
chr1:1799225-1799084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
72-244
               

               
Cow position:
               
chr1:91743270-91743437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
72-272
               

               
Cow position:
               
chr1:61011368-61011174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
192, 56
               

               
Conread position:
               
72-274
               

               
Cow position:
               
chr1:31855036-31855256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
72-296
               

               
Cow position:
               
chr1:62034642-62034860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
192, 38
               

               
Conread position:
               
72-326
               

               
Cow position:
               
chr1:64113607-64113854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
114, 55
               

               
Conread position:
               
72-332
               

               
Cow position:
               
chr1:45223769-45223514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
192, 70
               

               
Conread position:
               
72-343
               

               
Cow position:
               
chr1:39682191-39681919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
97, 29
               

               
Conread position:
               
72-366
               

               
Cow position:
               
chr1:6941659-6941364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
164, 66
               

               
Conread position:
               
72-366
               

               
Cow position:
               
chr1:6959072-6958777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
164, 66
               

               
Conread position:
               
72-366
               

               
Cow position:
               
chr1:49082939-49082641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
64, 115
               

               
Conread position:
               
72-368
               

               
Cow position:
               
chr1:47886287-47886587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
93, 63
               

               
Conread position:
               
72-376
               

               
Cow position:
               
chr1:100762267-100761966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 69
               

               
Conread position:
               
72-377
               

               
Cow position:
               
chr1:34856432-34856742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
72-382
               

               
Cow position:
               
chr1:100324565-100324858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr1:6078093-6077781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
42, 171
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr1:24581759-24581466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
190, 22
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr1:72813810-72813495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr1:78810073-78809763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr1:100741475-100741170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 112
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr1:101634892-101634587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
210, 80
               

               
Conread position:
               
72-389
               

               
Cow position:
               
chr1:67585744-67585422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
188, 72
               

               
Conread position:
               
72-394
               

               
Cow position:
               
chr1:47288437-47288112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
75, 122
               

               
Conread position:
               
73-220
               

               
Cow position:
               
chr1:25956088-25955941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
73-379
               

               
Cow position:
               
chr1:71078770-71079070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 89
               

               
Conread position:
               
73-384
               

               
Cow position:
               
chr1:89381466-89381157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 78
               

               
Conread position:
               
74-303
               

               
Cow position:
               
chr1:33775448-33775682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
74-374
               

               
Cow position:
               
chr1:77425420-77425719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
74-378
               

               
Cow position:
               
chr1:98453786-98453475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
86, 66
               

               
Conread position:
               
74-379
               

               
Cow position:
               
chr1:98060250-98059937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
161, 67
               

               
Conread position:
               
74-383
               

               
Cow position:
               
chr1:17196434-17196746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
74-383
               

               
Cow position:
               
chr1:43388863-43389166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 57
               

               
Conread position:
               
74-384
               

               
Cow position:
               
chr1:95499305-95499610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
196, 77
               

               
Conread position:
               
74-384
               

               
Cow position:
               
chr1:97090508-97090210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
190, 12
               

               
Conread position:
               
75-384
               

               
Cow position:
               
chr1:98031105-98030801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 16
               

               
Conread position:
               
76-378
               

               
Cow position:
               
chr1:2975800-2976105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
76-378
               

               
Cow position:
               
chr1:93528883-93528587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
135, 51
               

               
Conread position:
               
78-384
               

               
Cow position:
               
chr1:42968129-42968431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 108
               

               
Conread position:
               
79-283
               

               
Cow position:
               
chr1:69940638-69940841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
185, 49
               

               
Conread position:
               
79-338
               

               
Cow position:
               
chr1:92032413-92032673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
66, 7
               

               
Conread position:
               
79-339
               

               
Cow position:
               
chr1:89157944-89158202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
185, 63
               

               
Conread position:
               
79-354
               

               
Cow position:
               
chr1:5128641-5128356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 97
               

               
Conread position:
               
79-366
               

               
Cow position:
               
chr1:1499504-1499790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
65, 205
               

               
Conread position:
               
79-384
               

               
Cow position:
               
chr1:91816582-91816887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
80, 97
               

               
Conread position:
               
80-262
               

               
Cow position:
               
chr1:34731232-34731047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 98
               

               
Conread position:
               
80-351
               

               
Cow position:
               
chr1:33914016-33913736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
76, 88
               

               
Conread position:
               
80-352
               

               
Cow position:
               
chr1:101791932-101792200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 81
               

               
Conread position:
               
80-378
               

               
Cow position:
               
chr1:3419992-3419694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
82, 92
               

               
Conread position:
               
80-378
               

               
Cow position:
               
chr1:101714895-101715195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
110, 130
               

               
Conread position:
               
83-384
               

               
Cow position:
               
chr1:65904813-65905124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 43
               

               
Conread position:
               
83-384
               

               
Cow position:
               
chr1:68276596-68276293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
78, 103
               

               
Conread position:
               
83-384
               

               
Cow position:
               
chr1:70297464-70297160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
83-384
               

               
Cow position:
               
chr1:72104036-72103729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 94
               

               
Conread position:
               
87-368
               

               
Cow position:
               
chr1:13637487-13637766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
177, 59
               

               
Conread position:
               
87-384
               

               
Cow position:
               
chr1:51770273-51769970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
57, 102
               

               
Conread position:
               
87-384
               

               
Cow position:
               
chr1:53398151-53397874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
177, 54
               

               
Conread position:
               
87-384
               

               
Cow position:
               
chr1:91811960-91811670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
50, 152
               

               
Conread position:
               
90-350
               

               
Cow position:
               
chr1:37124302-37124042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
90, 37
               

               
Conread position:
               
90-379
               

               
Cow position:
               
chr1:79660223-79660513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 39
               

               
Conread position:
               
90-384
               

               
Cow position:
               
chr1:88926204-88926506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 88
               

               
Conread position:
               
91-384
               

               
Cow position:
               
chr1:96276879-96277172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
111, 39
               

               
Conread position:
               
91-385
               

               
Cow position:
               
chr1:31348261-31348560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
92-379
               

               
Cow position:
               
chr1:31607713-31608007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chr1:53458871-53458580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
92-384
               

               
Cow position:
               
chr1:84283249-84282956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 102
               

               
Conread position:
               
95-384
               

               
Cow position:
               
chr1:76019527-76019810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
169, 56
               

               
Conread position:
               
97-384
               

               
Cow position:
               
chr1:50963959-50964246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
98-256
               

               
Cow position:
               
chr1:83606280-83606440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
98-352
               

               
Cow position:
               
chr1:12725360-12725611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
161, 75
               

               
Conread position:
               
98-378
               

               
Cow position:
               
chr1:635364-635083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
98-378
               

               
Cow position:
               
chr1:53521081-53520800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 54
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr1:24534094-24534371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 28
               

               
Conread position:
               
98-397
               

               
Cow position:
               
chr1:89786079-89785781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
102-367
               

               
Cow position:
               
chr1:51044145-51044406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
162, 83
               

               
Conread position:
               
105-280
               

               
Cow position:
               
chr1:19962209-19962038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
159, 39
               

               
Conread position:
               
105-355
               

               
Cow position:
               
chr1:92516831-92517084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
105-383
               

               
Cow position:
               
chr1:52039793-52039520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
159, 41
               

               
Conread position:
               
108-384
               

               
Cow position:
               
chr1:86073750-86073477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
158, 34
               

               
Conread position:
               
114-373
               

               
Cow position:
               
chr1:1964895-1964636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
127-384
               

               
Cow position:
               
chr1:94261672-94261425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
156, 25
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr1:52995166-52994940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
128-363
               

               
Cow position:
               
chr1:45670770-45670542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 90
               

               
Conread position:
               
128-378
               

               
Cow position:
               
chr1:57297627-57297365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
62, 33
               

               
Conread position:
               
128-378
               

               
Cow position:
               
chr1:84255903-84255652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
136, 24
               

               
Conread position:
               
128-382
               

               
Cow position:
               
chr1:18780193-18780449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
112, 31
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr1:71253420-71253670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
139, 24
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr1:81613526-81613272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 9
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr1:85549940-85550195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr1:85647648-85647899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
139, 14
               

               
Conread position:
               
128-399
               

               
Cow position:
               
chr1:39509920-39510179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
135, 160
               

               
Conread position:
               
129-301
               

               
Cow position:
               
chr1:8670909-8670738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
135, 18
               

               
Conread position:
               
129-332
               

               
Cow position:
               
chr1:78067933-78068130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
42, 32
               

               
Conread position:
               
129-348
               

               
Cow position:
               
chr1:80841783-80841571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
129-355
               

               
Cow position:
               
chr1:50992069-50991846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
135, 22
               

               
Conread position:
               
129-378
               

               
Cow position:
               
chr1:80422409-80422169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
174, 102
               

               
Conread position:
               
129-382
               

               
Cow position:
               
chr1:101632205-101632454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
135, 16
               

               
Conread position:
               
129-384
               

               
Cow position:
               
chr1:3166937-3167186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
129-384
               

               
Cow position:
               
chr1:3882322-3882582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
129-384
               

               
Cow position:
               
chr1:5539137-5539394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
129-384
               

               
Cow position:
               
chr1:34300416-34300667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
130-379
               

               
Cow position:
               
chr1:7023257-7023008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
133, 188
               

               
Conread position:
               
130-385
               

               
Cow position:
               
chr1:98461422-98461175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
133, 178
               

               
Conread position:
               
131-255
               

               
Cow position:
               
chr1:84288535-84288414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
131-272
               

               
Cow position:
               
chr1:97750484-97750626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
131-289
               

               
Cow position:
               
chr1:808685-808845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
131-309
               

               
Cow position:
               
chr1:49153451-49153273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
133, 51
               

               
Conread position:
               
131-309
               

               
Cow position:
               
chr1:57091113-57090933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
131-335
               

               
Cow position:
               
chr1:86912575-86912370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
133, 154
               

               
Conread position:
               
131-343
               

               
Cow position:
               
chr1:68672467-68672676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
133, 87
               

               
Conread position:
               
131-343
               

               
Cow position:
               
chr1:98576182-98575969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
133, 142
               

               
Conread position:
               
131-352
               

               
Cow position:
               
chr1:95153357-95153134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
133, 119
               

               
Conread position:
               
131-373
               

               
Cow position:
               
chr1:37886677-37886916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
133, 105
               

               
Conread position:
               
131-377
               

               
Cow position:
               
chr1:81580312-81580066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
132, 88
               

               
Conread position:
               
131-383
               

               
Cow position:
               
chr1:39068821-39069071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
133, 154
               

               
Conread position:
               
131-383
               

               
Cow position:
               
chr1:47233343-47233595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 161
               

               
Conread position:
               
131-383
               

               
Cow position:
               
chr1:48730698-48730942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
133, 20
               

               
Conread position:
               
131-383
               

               
Cow position:
               
chr1:77880600-77880852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 22
               

               
Conread position:
               
131-383
               

               
Cow position:
               
chr1:82884258-82884506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
131-383
               

               
Cow position:
               
chr1:93554969-93554727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr1:19885516-19885271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
153, 95
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr1:41047169-41047417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
147, 22
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr1:53671615-53671856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
151, 108
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr1:57900589-57900856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
87, 174
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr1:68253730-68253474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 189
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr1:83748078-83747829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr1:85162412-85162661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr1:98551852-98551599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
131-385
               

               
Cow position:
               
chr1:90868312-90868558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
133, 34
               

               
Conread position:
               
131-411
               

               
Cow position:
               
chr1:78697636-78697910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 155
               

               
Conread position:
               
132-344
               

               
Cow position:
               
chr1:62036937-62036726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 146
               

               
Conread position:
               
132-377
               

               
Cow position:
               
chr1:67688451-67688691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
132, 14
               

               
Conread position:
               
132-379
               

               
Cow position:
               
chr1:45553111-45553356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
132, 20
               

               
Conread position:
               
132-381
               

               
Cow position:
               
chr1:98512060-98511813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
132, 48
               

               
Conread position:
               
132-385
               

               
Cow position:
               
chr1:81913023-81913267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
132, 20
               

               
Conread position:
               
132-394
               

               
Cow position:
               
chr1:5580189-5579924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
138, 37
               

               
Conread position:
               
133-348
               

               
Cow position:
               
chr1:25281524-25281742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
133-368
               

               
Cow position:
               
chr1:28177135-28176908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
133-377
               

               
Cow position:
               
chr1:92989725-92989479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
133-384
               

               
Cow position:
               
chr1:89341847-89342112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
133-384
               

               
Cow position:
               
chr1:91874784-91875026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
131, 70
               

               
Conread position:
               
133-384
               

               
Cow position:
               
chr1:100569287-100569034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 19
               

               
Conread position:
               
133-403
               

               
Cow position:
               
chr1:6972658-6972393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
131, 5
               

               
Conread position:
               
134-383
               

               
Cow position:
               
chr1:74822581-74822339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
135-365
               

               
Cow position:
               
chr1:4032763-4032530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
135-378
               

               
Cow position:
               
chr1:4291295-4291049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
100, 86
               

               
Conread position:
               
135-382
               

               
Cow position:
               
chr1:5135580-5135809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
135-382
               

               
Cow position:
               
chr1:69264939-69264700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 110
               

               
Conread position:
               
135-382
               

               
Cow position:
               
chr1:100800480-100800241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
136-382
               

               
Cow position:
               
chr1:83582805-83583049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
136-394
               

               
Cow position:
               
chr1:3789942-3790194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
129, 10
               

               
Conread position:
               
141-384
               

               
Cow position:
               
chr1:88652761-88652513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
84, 158
               

               
Conread position:
               
146-329
               

               
Cow position:
               
chr1:93044137-93043957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
118, 94
               

               
Conread position:
               
146-362
               

               
Cow position:
               
chr1:30417928-30418133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
144, 103
               

               
Conread position:
               
146-374
               

               
Cow position:
               
chr1:41252290-41252508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
104, 86
               

               
Conread position:
               
146-384
               

               
Cow position:
               
chr1:41115599-41115832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
115, 81
               

               
Conread position:
               
146-385
               

               
Cow position:
               
chr1:95177057-95176820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
147-297
               

               
Cow position:
               
chr1:92590310-92590167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
117, 21
               

               
Conread position:
               
147-332
               

               
Cow position:
               
chr1:22827277-22827088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
147-368
               

               
Cow position:
               
chr1:98360285-98360499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 63
               

               
Conread position:
               
147-369
               

               
Cow position:
               
chr1:24406778-24406996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
117, 130
               

               
Conread position:
               
147-378
               

               
Cow position:
               
chr1:100706245-100706022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 90
               

               
Conread position:
               
147-384
               

               
Cow position:
               
chr1:72732159-72731921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
117, 27
               

               
Conread position:
               
147-384
               

               
Cow position:
               
chr1:89350084-89349845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
147-385
               

               
Cow position:
               
chr1:19466170-19465938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
148-273
               

               
Cow position:
               
chr1:52429541-52429667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
148-384
               

               
Cow position:
               
chr1:42545661-42545904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
148-384
               

               
Cow position:
               
chr1:60281491-60281253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
116, 167
               

               
Conread position:
               
148-384
               

               
Cow position:
               
chr1:70380024-70380263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
148-384
               

               
Cow position:
               
chr1:77683469-77683240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
116, 8
               

               
Conread position:
               
148-884
               

               
Cow position:
               
chr1:4581212-4581944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
115, 184
               

               
Conread position:
               
150-384
               

               
Cow position:
               
chr1:45288756-45288990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
114, 10
               

               
Conread position:
               
150-384
               

               
Cow position:
               
chr1:80900235-80900000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
114, 40
               

               
Conread position:
               
152-345
               

               
Cow position:
               
chr1:52467417-52467223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 72
               

               
Conread position:
               
152-369
               

               
Cow position:
               
chr1:19226943-19227157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
112, 149
               

               
Conread position:
               
152-375
               

               
Cow position:
               
chr1:6752117-6752336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 142
               

               
Conread position:
               
152-380
               

               
Cow position:
               
chr1:12978796-12978567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
112, 132
               

               
Conread position:
               
152-388
               

               
Cow position:
               
chr1:91039060-91039294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
111, 82
               

               
Conread position:
               
153-344
               

               
Cow position:
               
chr1:48769915-48769726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
111, 133
               

               
Conread position:
               
153-377
               

               
Cow position:
               
chr1:43822512-43822290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
111, 70
               

               
Conread position:
               
153-384
               

               
Cow position:
               
chr1:38401912-38401677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
58, 76
               

               
Conread position:
               
155-378
               

               
Cow position:
               
chr1:61542808-61543029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
109, 72
               

               
Conread position:
               
155-382
               

               
Cow position:
               
chr1:52052606-52052835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 32
               

               
Conread position:
               
155-383
               

               
Cow position:
               
chr1:44125527-44125763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
112, 67
               

               
Conread position:
               
155-384
               

               
Cow position:
               
chr1:30047492-30047711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 49
               

               
Conread position:
               
155-384
               

               
Cow position:
               
chr1:36932265-36932040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
109, 93
               

               
Conread position:
               
155-384
               

               
Cow position:
               
chr1:37309408-37309631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 130
               

               
Conread position:
               
155-384
               

               
Cow position:
               
chr1:95215079-95215299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
156-383
               

               
Cow position:
               
chr1:26702097-26702323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 62
               

               
Conread position:
               
156-383
               

               
Cow position:
               
chr1:89230121-89230344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
108, 61
               

               
Conread position:
               
156-384
               

               
Cow position:
               
chr1:93810539-93810312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
108, 145
               

               
Conread position:
               
158-296
               

               
Cow position:
               
chr1:82556304-82556438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
108, 63
               

               
Conread position:
               
158-384
               

               
Cow position:
               
chr1:42555374-42555145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
106, 136
               

               
Conread position:
               
158-384
               

               
Cow position:
               
chr1:81355595-81355823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
75, 201
               

               
Conread position:
               
159-409
               

               
Cow position:
               
chr1:3720337-3720574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
160-378
               

               
Cow position:
               
chr1:60707508-60707298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 13
               

               
Conread position:
               
161-332
               

               
Cow position:
               
chr1:27380561-27380395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
161-379
               

               
Cow position:
               
chr1:55146902-55146690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
161-379
               

               
Cow position:
               
chr1:75142102-75141892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 124
               

               
Conread position:
               
161-384
               

               
Cow position:
               
chr1:4414104-4414325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
161-384
               

               
Cow position:
               
chr1:62291596-62291808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
103, 64
               

               
Conread position:
               
161-384
               

               
Cow position:
               
chr1:81868624-81868843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
102, 116
               

               
Conread position:
               
161-384
               

               
Cow position:
               
chr1:100393058-100393278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
79, 119
               

               
Conread position:
               
162-367
               

               
Cow position:
               
chr1:56635202-56634995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
162-384
               

               
Cow position:
               
chr1:81563849-81563619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
163-399
               

               
Cow position:
               
chr1:7350650-7350412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
23, 5
               

               
Conread position:
               
168-384
               

               
Cow position:
               
chr1:20205125-20204910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
99, 54
               

               
Conread position:
               
168-384
               

               
Cow position:
               
chr1:43703507-43703290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
96, 117
               

               
Conread position:
               
169-384
               

               
Cow position:
               
chr1:53425273-53425057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
62, 5
               

               
Conread position:
               
177-384
               

               
Cow position:
               
chr1:6788194-6788403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
87, 118
               

               
Conread position:
               
179-382
               

               
Cow position:
               
chr1:70026258-70026459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 107
               

               
Conread position:
               
179-382
               

               
Cow position:
               
chr1:101946627-101946825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
85, 106
               

               
Conread position:
               
179-383
               

               
Cow position:
               
chr1:96478787-96478576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
87, 118
               

               
Conread position:
               
179-384
               

               
Cow position:
               
chr1:68951712-68951510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
181-343
               

               
Cow position:
               
chr1:26729798-26729640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
181-379
               

               
Cow position:
               
chr1:98311157-98310956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
181-383
               

               
Cow position:
               
chr1:64250966-64251168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
5, 39
               

               
Conread position:
               
181-384
               

               
Cow position:
               
chr1:92434086-92433883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
5, 111
               

               
Conread position:
               
184-388
               

               
Cow position:
               
chr1:9470315-9470520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 111
               

               
Conread position:
               
185-347
               

               
Cow position:
               
chr1:61560642-61560807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
185-384
               

               
Cow position:
               
chr1:89498034-89497848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
108, 26
               

               
Conread position:
               
190-375
               

               
Cow position:
               
chr1:80904843-80904664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
190-384
               

               
Cow position:
               
chr1:4374261-4374458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
74, 125
               

               
Conread position:
               
190-384
               

               
Cow position:
               
chr1:55135912-55135716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 107
               

               
Conread position:
               
190-384
               

               
Cow position:
               
chr1:87440543-87440351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
192-379
               

               
Cow position:
               
chr1:91369935-91370121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
73, 61
               

               
Conread position:
               
192-384
               

               
Cow position:
               
chr1:79278373-79278564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
194-355
               

               
Cow position:
               
chr1:55088983-55089141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
100, 39
               

               
Conread position:
               
195-349
               

               
Cow position:
               
chr1:41695671-41695517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 8
               

               
Conread position:
               
195-368
               

               
Cow position:
               
chr1:69127095-69127264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
59, 68
               

               
Conread position:
               
198-384
               

               
Cow position:
               
chr1:1991350-1991538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
32, 55
               

               
Conread position:
               
200-384
               

               
Cow position:
               
chr1:89508617-89508439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
202-384
               

               
Cow position:
               
chr1:85301481-85301301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
102, 55
               

               
Conread position:
               
203-382
               

               
Cow position:
               
chr1:8984619-8984800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 115
               

               
Conread position:
               
204-382
               

               
Cow position:
               
chr1:24235457-24235632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
60, 81
               

               
Conread position:
               
204-384
               

               
Cow position:
               
chr1:60907439-60907253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
205-384
               

               
Cow position:
               
chr1:24445567-24445745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
210-384
               

               
Cow position:
               
chr1:99136374-99136548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
223-383
               

               
Cow position:
               
chr1:45535750-45535589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
240-384
               

               
Cow position:
               
chr1:1403455-1403596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
259-384
               

               
Cow position:
               
chr1:41004353-41004480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               
Show alignments to all cow chromosomes.