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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8012I13.3
        

               
Conread position:
               
1-213
               

               
Cow position:
               
chr11:9691250-9691034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 63
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr11:3740198-3739831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
143, 62
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr11:41278430-41278187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
24, 189
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr11:22884648-22884405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
2-378
               

               
Cow position:
               
chr11:4732586-4732207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
50, 156
               

               
Conread position:
               
2-383
               

               
Cow position:
               
chr11:52380636-52381014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 24
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr11:63433822-63434197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
2-388
               

               
Cow position:
               
chr11:13863860-13864243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr11:81849128-81848847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
151, 92
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chr11:85191381-85191750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
227, 22
               

               
Conread position:
               
3-378
               

               
Cow position:
               
chr11:40794110-40794486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 72
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr11:33369391-33369173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
142, 173
               

               
Conread position:
               
4-252
               

               
Cow position:
               
chr11:41238953-41239199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 50
               

               
Conread position:
               
4-384
               

               
Cow position:
               
chr11:23407697-23407320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
4-384
               

               
Cow position:
               
chr11:84385402-84385779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
143, 61
               

               
Conread position:
               
5-229
               

               
Cow position:
               
chr11:44614928-44615154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
5-368
               

               
Cow position:
               
chr11:70304311-70303958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
155, 45
               

               
Conread position:
               
5-383
               

               
Cow position:
               
chr11:63998848-63999230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 254
               

               
Conread position:
               
5-384
               

               
Cow position:
               
chr11:5433498-5433124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr11:19147903-19148129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 136
               

               
Conread position:
               
6-315
               

               
Cow position:
               
chr11:61675693-61675396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
7-220
               

               
Cow position:
               
chr11:7616972-7617184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr11:80296624-80296844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
7-247
               

               
Cow position:
               
chr11:13684485-13684716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
233, 115
               

               
Conread position:
               
7-249
               

               
Cow position:
               
chr11:68326626-68326870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
140, 180
               

               
Conread position:
               
9-384
               

               
Cow position:
               
chr11:77745022-77745399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
12-332
               

               
Cow position:
               
chr11:22676343-22676026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 171
               

               
Conread position:
               
14-252
               

               
Cow position:
               
chr11:6094176-6094412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
17-252
               

               
Cow position:
               
chr11:41979983-41980214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
19-378
               

               
Cow position:
               
chr11:66572270-66572636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
117, 44
               

               
Conread position:
               
20-254
               

               
Cow position:
               
chr11:64781308-64781075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
20-378
               

               
Cow position:
               
chr11:80756571-80756917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
245, 7
               

               
Conread position:
               
20-384
               

               
Cow position:
               
chr11:65762362-65762741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 54
               

               
Conread position:
               
21-371
               

               
Cow position:
               
chr11:83323800-83323445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
38, 125
               

               
Conread position:
               
23-200
               

               
Cow position:
               
chr11:6784425-6784251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
23-378
               

               
Cow position:
               
chr11:7458061-7458419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
165, 41
               

               
Conread position:
               
24-214
               

               
Cow position:
               
chr11:51683437-51683244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 164
               

               
Conread position:
               
24-326
               

               
Cow position:
               
chr11:8457682-8457986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
166, 40
               

               
Conread position:
               
24-377
               

               
Cow position:
               
chr11:18425021-18425372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
146, 41
               

               
Conread position:
               
25-339
               

               
Cow position:
               
chr11:17676159-17676467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 31
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chr11:42835733-42836093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 74
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chr11:59862425-59862080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
26-245
               

               
Cow position:
               
chr11:6319913-6320135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
23, 162
               

               
Conread position:
               
26-378
               

               
Cow position:
               
chr11:15504325-15503971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
118, 38
               

               
Conread position:
               
26-378
               

               
Cow position:
               
chr11:26143882-26144231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
118, 60
               

               
Conread position:
               
26-384
               

               
Cow position:
               
chr11:71492645-71492997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
27-220
               

               
Cow position:
               
chr11:42236063-42236259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
27-302
               

               
Cow position:
               
chr11:8259288-8259017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
27-328
               

               
Cow position:
               
chr11:21549694-21549398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 21
               

               
Conread position:
               
27-368
               

               
Cow position:
               
chr11:14470576-14470245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
27-368
               

               
Cow position:
               
chr11:25791476-25791812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
27-378
               

               
Cow position:
               
chr11:8496244-8495907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
150, 21
               

               
Conread position:
               
27-382
               

               
Cow position:
               
chr11:40395652-40395298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
28-244
               

               
Cow position:
               
chr11:47314207-47314433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
7, 110
               

               
Conread position:
               
28-255
               

               
Cow position:
               
chr11:86895589-86895364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
28-272
               

               
Cow position:
               
chr11:69417617-69417373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
106, 36
               

               
Conread position:
               
28-328
               

               
Cow position:
               
chr11:47725107-47724817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
28-382
               

               
Cow position:
               
chr11:55494886-55494540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
6, 77
               

               
Conread position:
               
28-384
               

               
Cow position:
               
chr11:36182904-36182545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
29-220
               

               
Cow position:
               
chr11:8421909-8422095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
29-247
               

               
Cow position:
               
chr11:57767399-57767186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
29-252
               

               
Cow position:
               
chr11:42191968-42192197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
97, 21
               

               
Conread position:
               
29-330
               

               
Cow position:
               
chr11:5075016-5075315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
29-332
               

               
Cow position:
               
chr11:30370319-30370018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
26, 114
               

               
Conread position:
               
29-364
               

               
Cow position:
               
chr11:63919849-63920170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
29-368
               

               
Cow position:
               
chr11:83032895-83032558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 112
               

               
Conread position:
               
29-369
               

               
Cow position:
               
chr11:63034958-63035302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
110, 36
               

               
Conread position:
               
29-377
               

               
Cow position:
               
chr11:21893935-21894286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr11:29916766-29916400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 134
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr11:48672924-48672579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
125, 20
               

               
Conread position:
               
30-245
               

               
Cow position:
               
chr11:47950829-47950614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
30-368
               

               
Cow position:
               
chr11:3720465-3720132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
116, 13
               

               
Conread position:
               
30-384
               

               
Cow position:
               
chr11:27747132-27746783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
30-384
               

               
Cow position:
               
chr11:34646806-34646450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
31-220
               

               
Cow position:
               
chr11:18777379-18777577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
31-249
               

               
Cow position:
               
chr11:18119714-18119495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
31-252
               

               
Cow position:
               
chr11:46884586-46884364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 42
               

               
Conread position:
               
31-274
               

               
Cow position:
               
chr11:15369601-15369355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
106, 132
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr11:80893992-80893720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
31-368
               

               
Cow position:
               
chr11:30708716-30708379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr11:18508818-18509153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr11:39462831-39462494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
233, 109
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr11:4662852-4663187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
233, 33
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr11:32254004-32254360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
32-241
               

               
Cow position:
               
chr11:38226453-38226244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
112, 32
               

               
Conread position:
               
32-249
               

               
Cow position:
               
chr11:12555096-12555312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
32-252
               

               
Cow position:
               
chr11:1485024-1485236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
32-252
               

               
Cow position:
               
chr11:21830001-21830219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
32-254
               

               
Cow position:
               
chr11:45350303-45350523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
112, 18
               

               
Conread position:
               
32-346
               

               
Cow position:
               
chr11:16315083-16314769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
32-355
               

               
Cow position:
               
chr11:6423186-6423515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 155
               

               
Conread position:
               
32-373
               

               
Cow position:
               
chr11:26535994-26535646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
146, 11
               

               
Conread position:
               
32-378
               

               
Cow position:
               
chr11:59024146-59024489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
95, 17
               

               
Conread position:
               
32-384
               

               
Cow position:
               
chr11:1625010-1625359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 146
               

               
Conread position:
               
32-384
               

               
Cow position:
               
chr11:2907321-2907660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
32-384
               

               
Cow position:
               
chr11:8988024-8988369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
62, 110
               

               
Conread position:
               
33-220
               

               
Cow position:
               
chr11:11483528-11483334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
103, 24
               

               
Conread position:
               
33-303
               

               
Cow position:
               
chr11:1932280-1932553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
95, 17
               

               
Conread position:
               
33-343
               

               
Cow position:
               
chr11:42919008-42919331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
33-352
               

               
Cow position:
               
chr11:6643028-6642702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 147
               

               
Conread position:
               
33-384
               

               
Cow position:
               
chr11:64077297-64077646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
33-384
               

               
Cow position:
               
chr11:70951081-70950741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
33-385
               

               
Cow position:
               
chr11:48429328-48428963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
34-230
               

               
Cow position:
               
chr11:26057441-26057638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
95, 19
               

               
Conread position:
               
34-253
               

               
Cow position:
               
chr11:7427729-7427949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
113, 19
               

               
Conread position:
               
34-257
               

               
Cow position:
               
chr11:63478570-63478363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
34-301
               

               
Cow position:
               
chr11:32710720-32710456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
112, 16
               

               
Conread position:
               
34-342
               

               
Cow position:
               
chr11:58594180-58594487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
34-384
               

               
Cow position:
               
chr11:37411313-37411670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
34-384
               

               
Cow position:
               
chr11:40466914-40467262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
120, 151
               

               
Conread position:
               
35-270
               

               
Cow position:
               
chr11:43914500-43914263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
35-325
               

               
Cow position:
               
chr11:62482849-62482554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
35-347
               

               
Cow position:
               
chr11:40792485-40792812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
5, 23
               

               
Conread position:
               
35-366
               

               
Cow position:
               
chr11:7385642-7385306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
229, 93
               

               
Conread position:
               
35-378
               

               
Cow position:
               
chr11:14649103-14649447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
153, 244
               

               
Conread position:
               
35-384
               

               
Cow position:
               
chr11:36059003-36058663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
36-265
               

               
Cow position:
               
chr11:47784990-47784752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
36-373
               

               
Cow position:
               
chr11:30764699-30764355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
152, 224
               

               
Conread position:
               
36-384
               

               
Cow position:
               
chr11:6399858-6400212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
132, 17
               

               
Conread position:
               
36-384
               

               
Cow position:
               
chr11:46329704-46329359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
37-220
               

               
Cow position:
               
chr11:62606624-62606439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 150
               

               
Conread position:
               
37-238
               

               
Cow position:
               
chr11:19657010-19657209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
129, 27
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr11:77017437-77017235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
37-252
               

               
Cow position:
               
chr11:34644859-34644646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
110, 32
               

               
Conread position:
               
37-282
               

               
Cow position:
               
chr11:41437981-41438227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
107, 15
               

               
Conread position:
               
37-290
               

               
Cow position:
               
chr11:25698080-25698334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
37-315
               

               
Cow position:
               
chr11:20194219-20194502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
145, 20
               

               
Conread position:
               
37-334
               

               
Cow position:
               
chr11:953563-953264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
37-343
               

               
Cow position:
               
chr11:22977673-22977971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
37-366
               

               
Cow position:
               
chr11:43360578-43360906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 113
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr11:45435278-45434945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 17
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr11:65607478-65607832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 118
               

               
Conread position:
               
37-410
               

               
Cow position:
               
chr11:66041476-66041108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
209, 16
               

               
Conread position:
               
38-345
               

               
Cow position:
               
chr11:31024597-31024910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
106, 26
               

               
Conread position:
               
38-348
               

               
Cow position:
               
chr11:29659761-29659457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
38-377
               

               
Cow position:
               
chr11:1380882-1380548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
105, 295
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr11:3726493-3726153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
38-384
               

               
Cow position:
               
chr11:63435733-63435376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 157
               

               
Conread position:
               
38-384
               

               
Cow position:
               
chr11:64335035-64334716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
172, 54
               

               
Conread position:
               
39-213
               

               
Cow position:
               
chr11:17369731-17369560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
39-269
               

               
Cow position:
               
chr11:78820353-78820125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
39-343
               

               
Cow position:
               
chr11:5417085-5416783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
39-384
               

               
Cow position:
               
chr11:40818430-40818781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 18
               

               
Conread position:
               
39-384
               

               
Cow position:
               
chr11:84228517-84228855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 104
               

               
Conread position:
               
39-385
               

               
Cow position:
               
chr11:75874569-75874895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
225, 18
               

               
Conread position:
               
39-385
               

               
Cow position:
               
chr11:80556423-80556078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 109
               

               
Conread position:
               
40-231
               

               
Cow position:
               
chr11:4411670-4411857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
40-249
               

               
Cow position:
               
chr11:74427882-74427671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 68
               

               
Conread position:
               
40-348
               

               
Cow position:
               
chr11:30808394-30808707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
104, 52
               

               
Conread position:
               
40-378
               

               
Cow position:
               
chr11:30638745-30639077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
9, 103
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chr11:33349500-33349840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chr11:64009928-64009577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
41-209
               

               
Cow position:
               
chr11:12768596-12768432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
41-222
               

               
Cow position:
               
chr11:81928314-81928487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
56, 10
               

               
Conread position:
               
41-274
               

               
Cow position:
               
chr11:18924948-18924713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
106, 16
               

               
Conread position:
               
41-282
               

               
Cow position:
               
chr11:56311394-56311636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 133
               

               
Conread position:
               
41-291
               

               
Cow position:
               
chr11:27461909-27462149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
223, 85
               

               
Conread position:
               
41-368
               

               
Cow position:
               
chr11:81167827-81168157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
19, 124
               

               
Conread position:
               
41-382
               

               
Cow position:
               
chr11:6245524-6245182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
19, 152
               

               
Conread position:
               
42-358
               

               
Cow position:
               
chr11:55762056-55761755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
220, 15
               

               
Conread position:
               
42-366
               

               
Cow position:
               
chr11:75285552-75285891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
16, 150
               

               
Conread position:
               
42-368
               

               
Cow position:
               
chr11:261054-261388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
42-383
               

               
Cow position:
               
chr11:50472519-50472176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
104, 145
               

               
Conread position:
               
42-384
               

               
Cow position:
               
chr11:35724171-35723838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
102, 145
               

               
Conread position:
               
43-228
               

               
Cow position:
               
chr11:54872560-54872745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
43-328
               

               
Cow position:
               
chr11:4636975-4637259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
112, 103
               

               
Conread position:
               
43-348
               

               
Cow position:
               
chr11:8584517-8584215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
43-364
               

               
Cow position:
               
chr11:47310784-47311106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 146
               

               
Conread position:
               
43-382
               

               
Cow position:
               
chr11:287130-287472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
43, 137
               

               
Conread position:
               
43-382
               

               
Cow position:
               
chr11:38236445-38236104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
106, 60
               

               
Conread position:
               
43-384
               

               
Cow position:
               
chr11:10095544-10095205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
9, 255
               

               
Conread position:
               
43-384
               

               
Cow position:
               
chr11:37804353-37804696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
44-216
               

               
Cow position:
               
chr11:25614602-25614787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 154
               

               
Conread position:
               
44-383
               

               
Cow position:
               
chr11:32054984-32055325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 143
               

               
Conread position:
               
44-384
               

               
Cow position:
               
chr11:17321866-17321519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
31, 185
               

               
Conread position:
               
45-240
               

               
Cow position:
               
chr11:74152551-74152752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
45-282
               

               
Cow position:
               
chr11:71854086-71854319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
215, 137
               

               
Conread position:
               
45-348
               

               
Cow position:
               
chr11:30494187-30493893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
45-375
               

               
Cow position:
               
chr11:35212973-35213294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
219, 53
               

               
Conread position:
               
45-378
               

               
Cow position:
               
chr11:62789326-62788993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 83
               

               
Conread position:
               
45-384
               

               
Cow position:
               
chr11:4207508-4207171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
99, 12
               

               
Conread position:
               
45-384
               

               
Cow position:
               
chr11:67931294-67931635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 19
               

               
Conread position:
               
46-230
               

               
Cow position:
               
chr11:74839802-74839623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
15, 47
               

               
Conread position:
               
46-251
               

               
Cow position:
               
chr11:45553669-45553457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
103, 132
               

               
Conread position:
               
46-335
               

               
Cow position:
               
chr11:1067242-1067535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 27
               

               
Conread position:
               
46-383
               

               
Cow position:
               
chr11:35580458-35580117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
46-384
               

               
Cow position:
               
chr11:50152616-50152957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
47-226
               

               
Cow position:
               
chr11:4390099-4389920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 131
               

               
Conread position:
               
47-270
               

               
Cow position:
               
chr11:2900517-2900749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
47-282
               

               
Cow position:
               
chr11:54428814-54428580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
102, 6
               

               
Conread position:
               
47-302
               

               
Cow position:
               
chr11:30964540-30964287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 174
               

               
Conread position:
               
47-332
               

               
Cow position:
               
chr11:19946618-19946346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
47-371
               

               
Cow position:
               
chr11:36940398-36940726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
99, 129
               

               
Conread position:
               
47-383
               

               
Cow position:
               
chr11:19487284-19487618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
100, 17
               

               
Conread position:
               
47-384
               

               
Cow position:
               
chr11:2575713-2576045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
219, 18
               

               
Conread position:
               
47-384
               

               
Cow position:
               
chr11:56729130-56728808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
212, 17
               

               
Conread position:
               
48-297
               

               
Cow position:
               
chr11:80639357-80639605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
192, 57
               

               
Conread position:
               
48-313
               

               
Cow position:
               
chr11:55636030-55636301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 128
               

               
Conread position:
               
48-332
               

               
Cow position:
               
chr11:36914371-36914657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
106, 16
               

               
Conread position:
               
48-340
               

               
Cow position:
               
chr11:35665365-35665660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
48-343
               

               
Cow position:
               
chr11:45619543-45619247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
211, 5
               

               
Conread position:
               
48-369
               

               
Cow position:
               
chr11:66896605-66896923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
211, 25
               

               
Conread position:
               
48-378
               

               
Cow position:
               
chr11:4323560-4323222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
48-378
               

               
Cow position:
               
chr11:20684376-20684709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
132, 16
               

               
Conread position:
               
48-378
               

               
Cow position:
               
chr11:38334718-38334391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
12, 70
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr11:3175862-3175549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
308, 5
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr11:33293585-33293929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr11:36286899-36286554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr11:81143350-81143692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
96, 16
               

               
Conread position:
               
49-198
               

               
Cow position:
               
chr11:32586929-32587079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
8, 106
               

               
Conread position:
               
49-224
               

               
Cow position:
               
chr11:82732956-82733131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
49-255
               

               
Cow position:
               
chr11:49396333-49396538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 7
               

               
Conread position:
               
49-258
               

               
Cow position:
               
chr11:36521075-36520859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 129
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr11:36194488-36194175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 82
               

               
Conread position:
               
49-383
               

               
Cow position:
               
chr11:258979-259313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 101
               

               
Conread position:
               
49-383
               

               
Cow position:
               
chr11:15772520-15772855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
97, 8
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr11:1485666-1486009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
120, 181
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr11:6202651-6202305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
7, 259
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr11:15339249-15338931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
216, 43
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr11:35153626-35153966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 53
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr11:44223076-44222749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr11:47638830-47639171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
107, 130
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr11:62620570-62620242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 105
               

               
Conread position:
               
49-386
               

               
Cow position:
               
chr11:2084339-2083999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
88, 330
               

               
Conread position:
               
50-199
               

               
Cow position:
               
chr11:63977248-63977101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
50-201
               

               
Cow position:
               
chr11:62655884-62655735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
136, 95
               

               
Conread position:
               
50-213
               

               
Cow position:
               
chr11:33271622-33271460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
114, 101
               

               
Conread position:
               
50-216
               

               
Cow position:
               
chr11:36361448-36361616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
50-220
               

               
Cow position:
               
chr11:30857228-30857060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
127, 74
               

               
Conread position:
               
50-228
               

               
Cow position:
               
chr11:15591287-15591460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
50-229
               

               
Cow position:
               
chr11:25721810-25721981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
50-250
               

               
Cow position:
               
chr11:49210624-49210829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
81, 117
               

               
Conread position:
               
50-255
               

               
Cow position:
               
chr11:32260724-32260522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
65, 132
               

               
Conread position:
               
50-256
               

               
Cow position:
               
chr11:1980073-1980281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
87, 14
               

               
Conread position:
               
50-257
               

               
Cow position:
               
chr11:9699062-9699259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
50-257
               

               
Cow position:
               
chr11:41576677-41576882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
5, 68
               

               
Conread position:
               
50-259
               

               
Cow position:
               
chr11:77241895-77241688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
196, 95
               

               
Conread position:
               
50-274
               

               
Cow position:
               
chr11:66939397-66939625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
50-286
               

               
Cow position:
               
chr11:897857-897628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
214, 47
               

               
Conread position:
               
50-302
               

               
Cow position:
               
chr11:46922694-46922947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 102
               

               
Conread position:
               
50-332
               

               
Cow position:
               
chr11:35536767-35536498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
214, 14
               

               
Conread position:
               
50-355
               

               
Cow position:
               
chr11:47837512-47837203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 42
               

               
Conread position:
               
50-368
               

               
Cow position:
               
chr11:31526072-31525744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
138, 15
               

               
Conread position:
               
50-370
               

               
Cow position:
               
chr11:13940380-13940064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
97, 66
               

               
Conread position:
               
50-373
               

               
Cow position:
               
chr11:67614732-67615059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 96
               

               
Conread position:
               
50-377
               

               
Cow position:
               
chr11:19591804-19592125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr11:7460430-7460750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr11:85723887-85723567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
201, 121
               

               
Conread position:
               
50-381
               

               
Cow position:
               
chr11:48660123-48659793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
214, 88
               

               
Conread position:
               
50-382
               

               
Cow position:
               
chr11:15017251-15016902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr11:31413649-31413313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 14
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr11:64044410-64044101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:41364-41042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:15632367-15632698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
143, 65
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:17227459-17227787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
214, 24
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:27404878-27405207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 141
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:30165703-30165368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
107, 14
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:33286762-33287094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
112, 136
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:33348006-33348327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
324, 54
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:46747666-46748005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
96, 140
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:48650178-48649840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
94, 14
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:53773876-53773535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
97, 124
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:62239934-62239605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 78
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr11:70483657-70484000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 140
               

               
Conread position:
               
50-386
               

               
Cow position:
               
chr11:83398100-83397762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 251
               

               
Conread position:
               
50-387
               

               
Cow position:
               
chr11:47351530-47351201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 139
               

               
Conread position:
               
50-397
               

               
Cow position:
               
chr11:70600635-70600973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
51-241
               

               
Cow position:
               
chr11:58186065-58185884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
51-383
               

               
Cow position:
               
chr11:20238869-20238531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr11:7874331-7874006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr11:46746829-46746487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr11:62490614-62490292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr11:83043175-83043505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 77
               

               
Conread position:
               
52-205
               

               
Cow position:
               
chr11:2830847-2830694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
52-235
               

               
Cow position:
               
chr11:34778252-34778436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
52-247
               

               
Cow position:
               
chr11:6006500-6006308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
112, 74
               

               
Conread position:
               
52-269
               

               
Cow position:
               
chr11:71022190-71021974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
52-280
               

               
Cow position:
               
chr11:4225275-4225059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
212, 19
               

               
Conread position:
               
52-328
               

               
Cow position:
               
chr11:29699495-29699782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 205
               

               
Conread position:
               
52-362
               

               
Cow position:
               
chr11:375652-375335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
52-377
               

               
Cow position:
               
chr11:68841400-68841068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
97, 128
               

               
Conread position:
               
52-378
               

               
Cow position:
               
chr11:13500202-13499881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
52-378
               

               
Cow position:
               
chr11:42016448-42016768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
105, 28
               

               
Conread position:
               
52-382
               

               
Cow position:
               
chr11:2925118-2925427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
212, 12
               

               
Conread position:
               
52-384
               

               
Cow position:
               
chr11:11647287-11646928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
52-384
               

               
Cow position:
               
chr11:13061062-13061371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
52-384
               

               
Cow position:
               
chr11:42291648-42291974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
9, 118
               

               
Conread position:
               
52-384
               

               
Cow position:
               
chr11:55053054-55052745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
212, 43
               

               
Conread position:
               
52-390
               

               
Cow position:
               
chr11:69978156-69977829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 34
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr11:65431707-65431549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr11:81340354-81340511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
98, 69
               

               
Conread position:
               
53-249
               

               
Cow position:
               
chr11:10563197-10563002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
7, 76
               

               
Conread position:
               
53-249
               

               
Cow position:
               
chr11:58048521-58048325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
111, 132
               

               
Conread position:
               
53-255
               

               
Cow position:
               
chr11:15366788-15366985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
114, 80
               

               
Conread position:
               
53-261
               

               
Cow position:
               
chr11:46784654-46784456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 80
               

               
Conread position:
               
53-271
               

               
Cow position:
               
chr11:17638328-17638564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 138
               

               
Conread position:
               
53-272
               

               
Cow position:
               
chr11:30172489-30172279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
210, 75
               

               
Conread position:
               
53-273
               

               
Cow position:
               
chr11:35769077-35768854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 101
               

               
Conread position:
               
53-281
               

               
Cow position:
               
chr11:38211831-38211606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
65, 30
               

               
Conread position:
               
53-321
               

               
Cow position:
               
chr11:62578992-62578723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
131, 11
               

               
Conread position:
               
53-355
               

               
Cow position:
               
chr11:37918858-37919156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
53-368
               

               
Cow position:
               
chr11:70756664-70756356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
252, 72
               

               
Conread position:
               
53-376
               

               
Cow position:
               
chr11:61526270-61525935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 148
               

               
Conread position:
               
53-378
               

               
Cow position:
               
chr11:17889537-17889858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
93, 134
               

               
Conread position:
               
53-378
               

               
Cow position:
               
chr11:61454313-61454662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr11:52690335-52690661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
211, 49
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr11:9270548-9270869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
211, 42
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr11:9464026-9463690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr11:19594009-19593680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
75, 107
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr11:45631590-45631903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
213, 68
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr11:49057573-49057261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
211, 69
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr11:62573838-62574146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
209, 74
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr11:66188131-66188462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
211, 41
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr11:80923136-80923465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
53-385
               

               
Cow position:
               
chr11:27913476-27913131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 294
               

               
Conread position:
               
53-386
               

               
Cow position:
               
chr11:49153130-49152808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
211, 78
               

               
Conread position:
               
53-387
               

               
Cow position:
               
chr11:81300431-81300754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 102
               

               
Conread position:
               
54-209
               

               
Cow position:
               
chr11:70821235-70821078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 119
               

               
Conread position:
               
54-213
               

               
Cow position:
               
chr11:73638044-73637884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
73, 102
               

               
Conread position:
               
54-238
               

               
Cow position:
               
chr11:73940373-73940559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
66, 124
               

               
Conread position:
               
54-282
               

               
Cow position:
               
chr11:35669776-35669992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
54-319
               

               
Cow position:
               
chr11:30867366-30867104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
210, 65
               

               
Conread position:
               
54-332
               

               
Cow position:
               
chr11:21508200-21507914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 128
               

               
Conread position:
               
54-347
               

               
Cow position:
               
chr11:31228142-31227864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
54-368
               

               
Cow position:
               
chr11:27719150-27719448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
54-368
               

               
Cow position:
               
chr11:40608404-40608722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 75
               

               
Conread position:
               
54-368
               

               
Cow position:
               
chr11:49872698-49873013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 168
               

               
Conread position:
               
54-378
               

               
Cow position:
               
chr11:57724634-57724958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
100, 122
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr11:41985859-41986186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
211, 98
               

               
Conread position:
               
54-385
               

               
Cow position:
               
chr11:11125854-11125520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
54-386
               

               
Cow position:
               
chr11:30192368-30192029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
54-394
               

               
Cow position:
               
chr11:77705942-77705601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 139
               

               
Conread position:
               
55-283
               

               
Cow position:
               
chr11:18915199-18914983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
6, 74
               

               
Conread position:
               
55-321
               

               
Cow position:
               
chr11:17721613-17721883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
55-373
               

               
Cow position:
               
chr11:17278494-17278794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
55-384
               

               
Cow position:
               
chr11:68909663-68909992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
6, 124
               

               
Conread position:
               
55-385
               

               
Cow position:
               
chr11:65826566-65826884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
56-224
               

               
Cow position:
               
chr11:63484127-63483961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
56-230
               

               
Cow position:
               
chr11:37042161-37041984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
66, 87
               

               
Conread position:
               
56-233
               

               
Cow position:
               
chr11:32108501-32108679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
93, 126
               

               
Conread position:
               
56-330
               

               
Cow position:
               
chr11:8437503-8437777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
56-331
               

               
Cow position:
               
chr11:32398828-32398548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 133
               

               
Conread position:
               
56-383
               

               
Cow position:
               
chr11:17859966-17860295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
101, 140
               

               
Conread position:
               
56-383
               

               
Cow position:
               
chr11:52297036-52297361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 76
               

               
Conread position:
               
56-384
               

               
Cow position:
               
chr11:39115660-39115352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
56-384
               

               
Cow position:
               
chr11:46580535-46580214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
102, 42
               

               
Conread position:
               
57-172
               

               
Cow position:
               
chr11:42452720-42452834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
57-220
               

               
Cow position:
               
chr11:81175784-81175619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
57-234
               

               
Cow position:
               
chr11:71814888-71814715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
57-241
               

               
Cow position:
               
chr11:80007876-80008066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 119
               

               
Conread position:
               
57-246
               

               
Cow position:
               
chr11:42206602-42206418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
57-247
               

               
Cow position:
               
chr11:9279618-9279428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
42, 132
               

               
Conread position:
               
57-248
               

               
Cow position:
               
chr11:66685724-66685911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 88
               

               
Conread position:
               
57-260
               

               
Cow position:
               
chr11:48315213-48315414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
57-263
               

               
Cow position:
               
chr11:2484610-2484816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
57-265
               

               
Cow position:
               
chr11:63165465-63165669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
57-274
               

               
Cow position:
               
chr11:3896512-3896731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
72, 185
               

               
Conread position:
               
57-325
               

               
Cow position:
               
chr11:63866475-63866737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
119, 88
               

               
Conread position:
               
57-332
               

               
Cow position:
               
chr11:41603515-41603779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
207, 65
               

               
Conread position:
               
57-332
               

               
Cow position:
               
chr11:42183225-42182951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
62, 170
               

               
Conread position:
               
57-344
               

               
Cow position:
               
chr11:39060419-39060702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 88
               

               
Conread position:
               
57-350
               

               
Cow position:
               
chr11:48086104-48085808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
165, 95
               

               
Conread position:
               
57-365
               

               
Cow position:
               
chr11:42067050-42066738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
187, 283
               

               
Conread position:
               
57-378
               

               
Cow position:
               
chr11:49149232-49148904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
158, 71
               

               
Conread position:
               
57-378
               

               
Cow position:
               
chr11:76653207-76652887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
133, 210
               

               
Conread position:
               
57-382
               

               
Cow position:
               
chr11:72375480-72375825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
87, 132
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr11:11558357-11558026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr11:20762038-20761705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 161
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr11:21728103-21728410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
183, 26
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr11:47899436-47899138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
210, 64
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr11:48296211-48295891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 48
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr11:55334105-55333770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
118, 238
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr11:68904902-68905215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
212, 65
               

               
Conread position:
               
57-389
               

               
Cow position:
               
chr11:21421752-21422082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
92, 133
               

               
Conread position:
               
57-394
               

               
Cow position:
               
chr11:70978549-70978878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
58-272
               

               
Cow position:
               
chr11:46427222-46427438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
58-304
               

               
Cow position:
               
chr11:82730799-82731061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
58-326
               

               
Cow position:
               
chr11:64105178-64104913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
113, 81
               

               
Conread position:
               
58-328
               

               
Cow position:
               
chr11:29308767-29308489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
96, 137
               

               
Conread position:
               
58-340
               

               
Cow position:
               
chr11:55911462-55911732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
206, 150
               

               
Conread position:
               
58-346
               

               
Cow position:
               
chr11:32881330-32881047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
96, 118
               

               
Conread position:
               
58-348
               

               
Cow position:
               
chr11:6194573-6194302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
58-378
               

               
Cow position:
               
chr11:30721285-30720962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
88, 132
               

               
Conread position:
               
58-382
               

               
Cow position:
               
chr11:18699055-18698738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
206, 83
               

               
Conread position:
               
58-383
               

               
Cow position:
               
chr11:24438034-24438365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 71
               

               
Conread position:
               
58-383
               

               
Cow position:
               
chr11:32693309-32693612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
58-383
               

               
Cow position:
               
chr11:51293226-51293552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
171, 67
               

               
Conread position:
               
58-384
               

               
Cow position:
               
chr11:1848980-1849303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
124, 37
               

               
Conread position:
               
58-384
               

               
Cow position:
               
chr11:38639284-38638978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
58-384
               

               
Cow position:
               
chr11:74316891-74316571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
59-220
               

               
Cow position:
               
chr11:36300400-36300559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
59-228
               

               
Cow position:
               
chr11:36847353-36847182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
97, 128
               

               
Conread position:
               
59-230
               

               
Cow position:
               
chr11:47110440-47110261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
59-244
               

               
Cow position:
               
chr11:30322310-30322494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
59-244
               

               
Cow position:
               
chr11:79666078-79666263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
88, 34
               

               
Conread position:
               
59-245
               

               
Cow position:
               
chr11:26442319-26442508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
85, 130
               

               
Conread position:
               
59-262
               

               
Cow position:
               
chr11:56115121-56114919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
38, 83
               

               
Conread position:
               
59-267
               

               
Cow position:
               
chr11:25604137-25603924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 206
               

               
Conread position:
               
59-286
               

               
Cow position:
               
chr11:72292745-72292508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
59-324
               

               
Cow position:
               
chr11:82740676-82740426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
205, 32
               

               
Conread position:
               
59-332
               

               
Cow position:
               
chr11:3715423-3715146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
59-376
               

               
Cow position:
               
chr11:62742464-62742766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
205, 86
               

               
Conread position:
               
59-378
               

               
Cow position:
               
chr11:23251415-23251728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
151, 36
               

               
Conread position:
               
59-378
               

               
Cow position:
               
chr11:55744653-55744342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
67, 127
               

               
Conread position:
               
59-378
               

               
Cow position:
               
chr11:68913327-68913007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
90, 129
               

               
Conread position:
               
59-383
               

               
Cow position:
               
chr11:13592923-13592596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
85, 230
               

               
Conread position:
               
59-383
               

               
Cow position:
               
chr11:27248672-27248352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 87
               

               
Conread position:
               
59-383
               

               
Cow position:
               
chr11:76369346-76369661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 42
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr11:6233694-6234021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
85, 231
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr11:35347567-35347896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 119
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr11:42884601-42884919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
87, 128
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr11:53778804-53778473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
69, 229
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr11:64029083-64029399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr11:65157221-65157553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr11:67600962-67600641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
205, 86
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr11:76890225-76889907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr11:79728488-79728811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr11:82940446-82940763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
59-385
               

               
Cow position:
               
chr11:77758577-77758901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
90, 60
               

               
Conread position:
               
60-218
               

               
Cow position:
               
chr11:17309585-17309427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 122
               

               
Conread position:
               
60-228
               

               
Cow position:
               
chr11:53651823-53651655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 34
               

               
Conread position:
               
60-238
               

               
Cow position:
               
chr11:81065867-81066045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
104, 125
               

               
Conread position:
               
60-256
               

               
Cow position:
               
chr11:30986819-30986628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
60-269
               

               
Cow position:
               
chr11:20205675-20205879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
203, 81
               

               
Conread position:
               
60-270
               

               
Cow position:
               
chr11:30842842-30843047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
204, 32
               

               
Conread position:
               
60-273
               

               
Cow position:
               
chr11:30894820-30895034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
60-274
               

               
Cow position:
               
chr11:15382312-15382535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
60-274
               

               
Cow position:
               
chr11:35351850-35352071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 133
               

               
Conread position:
               
60-289
               

               
Cow position:
               
chr11:21886013-21885786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
60-289
               

               
Cow position:
               
chr11:68883903-68883670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 118
               

               
Conread position:
               
60-296
               

               
Cow position:
               
chr11:10956691-10956929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
104, 67
               

               
Conread position:
               
60-300
               

               
Cow position:
               
chr11:18447318-18447548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
204, 68
               

               
Conread position:
               
60-332
               

               
Cow position:
               
chr11:62812769-62813041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
60-342
               

               
Cow position:
               
chr11:53817038-53816759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
89, 180
               

               
Conread position:
               
60-346
               

               
Cow position:
               
chr11:5217277-5217570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 117
               

               
Conread position:
               
60-346
               

               
Cow position:
               
chr11:73573830-73573543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
87, 134
               

               
Conread position:
               
60-348
               

               
Cow position:
               
chr11:29960475-29960190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 24
               

               
Conread position:
               
60-382
               

               
Cow position:
               
chr11:19500621-19500919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
298, 68
               

               
Conread position:
               
60-382
               

               
Cow position:
               
chr11:67615069-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 31
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:2788578-2788238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:2917410-2917727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 68
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:5201463-5201791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
90, 31
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:5486199-5485868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:23271823-23272141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
97, 51
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:30830440-30830757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 26
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:32126799-32126469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 125
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:41215916-41215600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:44032189-44031861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 31
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:59463457-59463778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:64103868-64104200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
104, 56
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:70251097-70250784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
153, 25
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:75479840-75480170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr11:78380886-78381196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 76
               

               
Conread position:
               
61-231
               

               
Cow position:
               
chr11:4621253-4621419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
61-249
               

               
Cow position:
               
chr11:42084491-42084682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 134
               

               
Conread position:
               
61-306
               

               
Cow position:
               
chr11:25119754-25119997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
203, 86
               

               
Conread position:
               
61-329
               

               
Cow position:
               
chr11:33409084-33409347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
203, 30
               

               
Conread position:
               
61-331
               

               
Cow position:
               
chr11:72884416-72884675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 70
               

               
Conread position:
               
61-378
               

               
Cow position:
               
chr11:2874584-2874257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
88, 129
               

               
Conread position:
               
61-383
               

               
Cow position:
               
chr11:45646416-45646735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 14
               

               
Conread position:
               
61-383
               

               
Cow position:
               
chr11:62663059-62663361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
61-385
               

               
Cow position:
               
chr11:11469472-11469778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
62-219
               

               
Cow position:
               
chr11:53486979-53487130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
62-254
               

               
Cow position:
               
chr11:6255828-6256014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
62-272
               

               
Cow position:
               
chr11:29786312-29786529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
62-343
               

               
Cow position:
               
chr11:53510314-53510604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 167
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr11:71390393-71390705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 65
               

               
Conread position:
               
63-248
               

               
Cow position:
               
chr11:76248226-76248044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
86, 28
               

               
Conread position:
               
63-378
               

               
Cow position:
               
chr11:19247025-19247331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
102, 35
               

               
Conread position:
               
63-388
               

               
Cow position:
               
chr11:81134989-81135311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
201, 88
               

               
Conread position:
               
64-234
               

               
Cow position:
               
chr11:29782336-29782174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
64-249
               

               
Cow position:
               
chr11:63485111-63484932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
64-326
               

               
Cow position:
               
chr11:41313483-41313740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
200, 34
               

               
Conread position:
               
64-341
               

               
Cow position:
               
chr11:42159883-42160159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 30
               

               
Conread position:
               
64-348
               

               
Cow position:
               
chr11:46999165-46998879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 176
               

               
Conread position:
               
64-383
               

               
Cow position:
               
chr11:21843960-21844273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 123
               

               
Conread position:
               
64-383
               

               
Cow position:
               
chr11:42296448-42296758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
64-383
               

               
Cow position:
               
chr11:48544615-48544296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
113, 76
               

               
Conread position:
               
64-383
               

               
Cow position:
               
chr11:51729453-51729148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 57
               

               
Conread position:
               
65-337
               

               
Cow position:
               
chr11:80564475-80564198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 108
               

               
Conread position:
               
65-384
               

               
Cow position:
               
chr11:24602136-24601832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
67-354
               

               
Cow position:
               
chr11:26274790-26275068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 62
               

               
Conread position:
               
67-384
               

               
Cow position:
               
chr11:13042972-13043287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
197, 78
               

               
Conread position:
               
68-209
               

               
Cow position:
               
chr11:33289294-33289429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
68-211
               

               
Cow position:
               
chr11:85985874-85986018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
68-249
               

               
Cow position:
               
chr11:27760693-27760511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
68-359
               

               
Cow position:
               
chr11:17036357-17036646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 60
               

               
Conread position:
               
68-378
               

               
Cow position:
               
chr11:56676100-56675782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
76, 66
               

               
Conread position:
               
69-235
               

               
Cow position:
               
chr11:15278844-15279005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
69-377
               

               
Cow position:
               
chr11:35980967-35981278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 109
               

               
Conread position:
               
69-380
               

               
Cow position:
               
chr11:30209649-30209959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
70-384
               

               
Cow position:
               
chr11:32199116-32198795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
71-378
               

               
Cow position:
               
chr11:31337551-31337247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
189, 55
               

               
Conread position:
               
71-384
               

               
Cow position:
               
chr11:47755208-47755526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 175
               

               
Conread position:
               
71-384
               

               
Cow position:
               
chr11:77319584-77319271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 81
               

               
Conread position:
               
72-238
               

               
Cow position:
               
chr11:5467252-5467086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
84, 54
               

               
Conread position:
               
72-247
               

               
Cow position:
               
chr11:60720283-60720460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
72-252
               

               
Cow position:
               
chr11:49207882-49207701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 146
               

               
Conread position:
               
72-268
               

               
Cow position:
               
chr11:34467733-34467545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
72-272
               

               
Cow position:
               
chr11:62889721-62889924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
75, 103
               

               
Conread position:
               
72-283
               

               
Cow position:
               
chr11:39554018-39554239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 116
               

               
Conread position:
               
72-295
               

               
Cow position:
               
chr11:39619880-39620093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
72-319
               

               
Cow position:
               
chr11:36920407-36920656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
82, 23
               

               
Conread position:
               
72-341
               

               
Cow position:
               
chr11:81160052-81159781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
82, 103
               

               
Conread position:
               
72-344
               

               
Cow position:
               
chr11:69016148-69015870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 104
               

               
Conread position:
               
72-345
               

               
Cow position:
               
chr11:18910713-18910981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
136, 73
               

               
Conread position:
               
72-349
               

               
Cow position:
               
chr11:17083142-17083417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 71
               

               
Conread position:
               
72-368
               

               
Cow position:
               
chr11:36981736-36981442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
72-377
               

               
Cow position:
               
chr11:73353896-73354188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
192, 68
               

               
Conread position:
               
72-378
               

               
Cow position:
               
chr11:45872139-45872452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
82, 103
               

               
Conread position:
               
72-383
               

               
Cow position:
               
chr11:28993577-28993872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr11:8524947-8525252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
192, 80
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr11:68112088-68112404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 114
               

               
Conread position:
               
72-385
               

               
Cow position:
               
chr11:66734003-66733693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 89
               

               
Conread position:
               
72-390
               

               
Cow position:
               
chr11:48474880-48474554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 88
               

               
Conread position:
               
73-332
               

               
Cow position:
               
chr11:30355216-30354968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
73-344
               

               
Cow position:
               
chr11:15285454-15285718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
189, 36
               

               
Conread position:
               
73-382
               

               
Cow position:
               
chr11:47772212-47772531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 288
               

               
Conread position:
               
73-384
               

               
Cow position:
               
chr11:18852073-18851777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 70
               

               
Conread position:
               
74-273
               

               
Cow position:
               
chr11:63975300-63975098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
74-346
               

               
Cow position:
               
chr11:14875599-14875881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
74-383
               

               
Cow position:
               
chr11:6633895-6633571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 292
               

               
Conread position:
               
74-384
               

               
Cow position:
               
chr11:34144750-34145055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 144
               

               
Conread position:
               
74-384
               

               
Cow position:
               
chr11:86132299-86132595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
301, 49
               

               
Conread position:
               
76-384
               

               
Cow position:
               
chr11:83066659-83066353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
68, 63
               

               
Conread position:
               
79-273
               

               
Cow position:
               
chr11:78544449-78544252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
75, 97
               

               
Conread position:
               
79-301
               

               
Cow position:
               
chr11:75090055-75090276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 16
               

               
Conread position:
               
79-346
               

               
Cow position:
               
chr11:36217536-36217795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
180, 84
               

               
Conread position:
               
79-355
               

               
Cow position:
               
chr11:31875258-31874980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 98
               

               
Conread position:
               
79-368
               

               
Cow position:
               
chr11:35791656-35791937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
79-384
               

               
Cow position:
               
chr11:3780251-3780563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 23
               

               
Conread position:
               
80-362
               

               
Cow position:
               
chr11:75178061-75177775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 118
               

               
Conread position:
               
80-384
               

               
Cow position:
               
chr11:4674281-4674589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
81-378
               

               
Cow position:
               
chr11:3703114-3702816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
81-384
               

               
Cow position:
               
chr11:81162284-81162574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
81-384
               

               
Cow position:
               
chr11:81406005-81406300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
68, 95
               

               
Conread position:
               
82-379
               

               
Cow position:
               
chr11:38670851-38670547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 164
               

               
Conread position:
               
82-384
               

               
Cow position:
               
chr11:8544855-8545154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
49, 95
               

               
Conread position:
               
82-394
               

               
Cow position:
               
chr11:10992423-10992131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
120, 45
               

               
Conread position:
               
86-383
               

               
Cow position:
               
chr11:13191393-13191082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
102, 212
               

               
Conread position:
               
86-384
               

               
Cow position:
               
chr11:61203323-61203024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
87-317
               

               
Cow position:
               
chr11:56499994-56499763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
87-382
               

               
Cow position:
               
chr11:59903048-59902751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
62, 103
               

               
Conread position:
               
87-384
               

               
Cow position:
               
chr11:39499511-39499217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 59
               

               
Conread position:
               
88-378
               

               
Cow position:
               
chr11:87155676-87155384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 102
               

               
Conread position:
               
88-384
               

               
Cow position:
               
chr11:17493638-17493337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
90-332
               

               
Cow position:
               
chr11:24599242-24599479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
174, 33
               

               
Conread position:
               
90-384
               

               
Cow position:
               
chr11:23385085-23385387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 237
               

               
Conread position:
               
90-384
               

               
Cow position:
               
chr11:34121351-34121059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
91-258
               

               
Cow position:
               
chr11:17807809-17807979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
80, 96
               

               
Conread position:
               
91-321
               

               
Cow position:
               
chr11:31410728-31410962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
171, 55
               

               
Conread position:
               
92-347
               

               
Cow position:
               
chr11:19232799-19233058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
59, 171
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chr11:68206695-68206979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
137, 49
               

               
Conread position:
               
95-378
               

               
Cow position:
               
chr11:71868455-71868739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
69, 90
               

               
Conread position:
               
95-384
               

               
Cow position:
               
chr11:3393066-3393351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 46
               

               
Conread position:
               
98-378
               

               
Cow position:
               
chr11:36112563-36112291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
46, 55
               

               
Conread position:
               
99-286
               

               
Cow position:
               
chr11:37425010-37425187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
176, 47
               

               
Conread position:
               
99-383
               

               
Cow position:
               
chr11:23586784-23586497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
100-384
               

               
Cow position:
               
chr11:56187750-56187478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
166, 52
               

               
Conread position:
               
101-380
               

               
Cow position:
               
chr11:18706687-18706955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
114, 44
               

               
Conread position:
               
102-384
               

               
Cow position:
               
chr11:18243804-18244080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
162, 57
               

               
Conread position:
               
105-368
               

               
Cow position:
               
chr11:34113400-34113138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
66, 39
               

               
Conread position:
               
105-368
               

               
Cow position:
               
chr11:81282091-81281822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
105-384
               

               
Cow position:
               
chr11:32436476-32436190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
106-378
               

               
Cow position:
               
chr11:33414375-33414102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 74
               

               
Conread position:
               
107-384
               

               
Cow position:
               
chr11:59873059-59872790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
91, 38
               

               
Conread position:
               
111-378
               

               
Cow position:
               
chr11:6835667-6835399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
114-378
               

               
Cow position:
               
chr11:83687304-83687563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
126-368
               

               
Cow position:
               
chr11:23232403-23232641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 73
               

               
Conread position:
               
126-384
               

               
Cow position:
               
chr11:67747396-67747143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
140, 46
               

               
Conread position:
               
128-256
               

               
Cow position:
               
chr11:70741257-70741129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
128-317
               

               
Cow position:
               
chr11:79018946-79019135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
137, 24
               

               
Conread position:
               
128-348
               

               
Cow position:
               
chr11:26845482-26845700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
130, 19
               

               
Conread position:
               
128-378
               

               
Cow position:
               
chr11:3234190-3233950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
136, 145
               

               
Conread position:
               
128-383
               

               
Cow position:
               
chr11:28644202-28643944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr11:377528-377787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
134, 23
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr11:20602339-20602086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr11:40573219-40573474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr11:44234468-44234212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
136, 24
               

               
Conread position:
               
129-327
               

               
Cow position:
               
chr11:22747219-22747414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
121, 23
               

               
Conread position:
               
129-346
               

               
Cow position:
               
chr11:35803248-35803029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
129-378
               

               
Cow position:
               
chr11:83926154-83925915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
135, 23
               

               
Conread position:
               
129-384
               

               
Cow position:
               
chr11:25387181-25386922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
115, 22
               

               
Conread position:
               
129-384
               

               
Cow position:
               
chr11:48496481-48496729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
129-384
               

               
Cow position:
               
chr11:61958633-61958888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
136, 23
               

               
Conread position:
               
129-384
               

               
Cow position:
               
chr11:70609908-70609644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
106, 18
               

               
Conread position:
               
130-294
               

               
Cow position:
               
chr11:62376361-62376524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
134, 75
               

               
Conread position:
               
130-378
               

               
Cow position:
               
chr11:40478740-40478985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
134, 153
               

               
Conread position:
               
130-383
               

               
Cow position:
               
chr11:59702602-59702346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
130-384
               

               
Cow position:
               
chr11:36238888-36238642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
137, 22
               

               
Conread position:
               
131-299
               

               
Cow position:
               
chr11:48248104-48248272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
135, 157
               

               
Conread position:
               
131-341
               

               
Cow position:
               
chr11:69119406-69119193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
131-345
               

               
Cow position:
               
chr11:18588476-18588688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 19
               

               
Conread position:
               
131-366
               

               
Cow position:
               
chr11:54334438-54334210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
131-369
               

               
Cow position:
               
chr11:83033130-83033362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
131-372
               

               
Cow position:
               
chr11:41293706-41293948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
133, 154
               

               
Conread position:
               
131-378
               

               
Cow position:
               
chr11:70086444-70086193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
135, 69
               

               
Conread position:
               
131-381
               

               
Cow position:
               
chr11:63847958-63847711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
131-381
               

               
Cow position:
               
chr11:83230289-83230529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
133, 114
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:952376-952130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:7590300-7590052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
133, 91
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:16906939-16907184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
104, 90
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:30955112-30954857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 156
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:34963179-34962921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
133, 16
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:44036831-44036577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 88
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:48272312-48272056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
133, 157
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:50073053-50072809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 150
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:56518199-56518450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:62226099-62225845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 126
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:69076022-69075767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
135, 113
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:70278001-70278250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
246, 156
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:73924451-73924701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr11:77128772-77128518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
128, 210
               

               
Conread position:
               
132-308
               

               
Cow position:
               
chr11:19606687-19606512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
132, 19
               

               
Conread position:
               
132-366
               

               
Cow position:
               
chr11:36658713-36658944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
132, 29
               

               
Conread position:
               
132-368
               

               
Cow position:
               
chr11:23137944-23138184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
45, 19
               

               
Conread position:
               
132-368
               

               
Cow position:
               
chr11:33311086-33310847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
73, 20
               

               
Conread position:
               
132-378
               

               
Cow position:
               
chr11:17831110-17831352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 106
               

               
Conread position:
               
132-383
               

               
Cow position:
               
chr11:44575644-44575875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
131, 20
               

               
Conread position:
               
132-384
               

               
Cow position:
               
chr11:1070982-1071233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
132, 20
               

               
Conread position:
               
132-384
               

               
Cow position:
               
chr11:2092436-2092198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
133, 20
               

               
Conread position:
               
132-384
               

               
Cow position:
               
chr11:62150783-62151026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
132, 89
               

               
Conread position:
               
133-290
               

               
Cow position:
               
chr11:34413232-34413389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
131, 13
               

               
Conread position:
               
133-378
               

               
Cow position:
               
chr11:71501024-71501267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
131, 18
               

               
Conread position:
               
134-289
               

               
Cow position:
               
chr11:47882911-47882756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
130, 16
               

               
Conread position:
               
134-301
               

               
Cow position:
               
chr11:36328931-36329091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
130, 11
               

               
Conread position:
               
134-321
               

               
Cow position:
               
chr11:3790949-3790754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
134-384
               

               
Cow position:
               
chr11:44636648-44636899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 12
               

               
Conread position:
               
135-366
               

               
Cow position:
               
chr11:33345551-33345320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
135-384
               

               
Cow position:
               
chr11:43898244-43897999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
135-384
               

               
Cow position:
               
chr11:63909561-63909799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
129, 17
               

               
Conread position:
               
136-377
               

               
Cow position:
               
chr11:80530465-80530234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
131, 79
               

               
Conread position:
               
136-384
               

               
Cow position:
               
chr11:36799203-36799444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
121, 16
               

               
Conread position:
               
137-384
               

               
Cow position:
               
chr11:5569-5325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
127, 155
               

               
Conread position:
               
138-384
               

               
Cow position:
               
chr11:16342124-16342381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
126, 250
               

               
Conread position:
               
139-382
               

               
Cow position:
               
chr11:47545238-47544991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
140-314
               

               
Cow position:
               
chr11:30484022-30483845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
124, 148
               

               
Conread position:
               
142-343
               

               
Cow position:
               
chr11:22499266-22499464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 76
               

               
Conread position:
               
142-383
               

               
Cow position:
               
chr11:86720317-86720552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
22, 49
               

               
Conread position:
               
146-326
               

               
Cow position:
               
chr11:53279619-53279798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
118, 15
               

               
Conread position:
               
146-346
               

               
Cow position:
               
chr11:32690874-32691067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
118, 129
               

               
Conread position:
               
146-377
               

               
Cow position:
               
chr11:1362371-1362609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
118, 236
               

               
Conread position:
               
146-378
               

               
Cow position:
               
chr11:80761281-80761514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
146-384
               

               
Cow position:
               
chr11:18572897-18572660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
118, 98
               

               
Conread position:
               
146-384
               

               
Cow position:
               
chr11:23128443-23128684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
117, 142
               

               
Conread position:
               
146-384
               

               
Cow position:
               
chr11:35684404-35684636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
120, 139
               

               
Conread position:
               
146-384
               

               
Cow position:
               
chr11:42359216-42358978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
28, 152
               

               
Conread position:
               
146-384
               

               
Cow position:
               
chr11:76114739-76114513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 41
               

               
Conread position:
               
147-283
               

               
Cow position:
               
chr11:16842892-16843025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
147-343
               

               
Cow position:
               
chr11:12111363-12111554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
117, 69
               

               
Conread position:
               
147-351
               

               
Cow position:
               
chr11:28395571-28395362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
147-365
               

               
Cow position:
               
chr11:31506946-31506722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
147-367
               

               
Cow position:
               
chr11:6194300-6194081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
147-373
               

               
Cow position:
               
chr11:64867925-64868145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 103
               

               
Conread position:
               
147-378
               

               
Cow position:
               
chr11:46953043-46952814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
116, 138
               

               
Conread position:
               
147-383
               

               
Cow position:
               
chr11:35775433-35775198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
156, 133
               

               
Conread position:
               
147-384
               

               
Cow position:
               
chr11:5031680-5031916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 86
               

               
Conread position:
               
147-384
               

               
Cow position:
               
chr11:8147803-8148038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
117, 143
               

               
Conread position:
               
147-385
               

               
Cow position:
               
chr11:73512348-73512574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
227, 14
               

               
Conread position:
               
147-403
               

               
Cow position:
               
chr11:65767295-65767037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
148-365
               

               
Cow position:
               
chr11:14466392-14466610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 215
               

               
Conread position:
               
148-384
               

               
Cow position:
               
chr11:53553310-53553095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
148-385
               

               
Cow position:
               
chr11:21852207-21852446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
116, 196
               

               
Conread position:
               
149-384
               

               
Cow position:
               
chr11:10213475-10213705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 41
               

               
Conread position:
               
151-381
               

               
Cow position:
               
chr11:8428603-8428363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
113, 126
               

               
Conread position:
               
151-383
               

               
Cow position:
               
chr11:50778459-50778233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
151-384
               

               
Cow position:
               
chr11:11232364-11232596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
151-384
               

               
Cow position:
               
chr11:17661175-17660953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
115, 71
               

               
Conread position:
               
151-384
               

               
Cow position:
               
chr11:31352460-31352711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
152-321
               

               
Cow position:
               
chr11:28168332-28168503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
152-348
               

               
Cow position:
               
chr11:249391-249590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
112, 134
               

               
Conread position:
               
152-382
               

               
Cow position:
               
chr11:63469966-63469738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
110, 183
               

               
Conread position:
               
152-384
               

               
Cow position:
               
chr11:80819914-80820140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
110, 64
               

               
Conread position:
               
153-332
               

               
Cow position:
               
chr11:35873913-35874095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
109, 139
               

               
Conread position:
               
153-384
               

               
Cow position:
               
chr11:45897959-45898194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
153-384
               

               
Cow position:
               
chr11:64090008-64090225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
111, 8
               

               
Conread position:
               
153-401
               

               
Cow position:
               
chr11:33341055-33341302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
111, 229
               

               
Conread position:
               
154-282
               

               
Cow position:
               
chr11:16801868-16801992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
108, 85
               

               
Conread position:
               
154-383
               

               
Cow position:
               
chr11:34829697-34829921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 65
               

               
Conread position:
               
155-378
               

               
Cow position:
               
chr11:80537574-80537351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
155-379
               

               
Cow position:
               
chr11:64638438-64638665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 78
               

               
Conread position:
               
155-383
               

               
Cow position:
               
chr11:41272225-41272001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
109, 98
               

               
Conread position:
               
155-384
               

               
Cow position:
               
chr11:16540950-16540721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
109, 200
               

               
Conread position:
               
155-384
               

               
Cow position:
               
chr11:48306259-48306485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
109, 138
               

               
Conread position:
               
155-384
               

               
Cow position:
               
chr11:49934643-49934879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
156-363
               

               
Cow position:
               
chr11:84490412-84490610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 81
               

               
Conread position:
               
157-376
               

               
Cow position:
               
chr11:52983761-52983547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
107, 128
               

               
Conread position:
               
158-384
               

               
Cow position:
               
chr11:44642207-44642428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
106, 16
               

               
Conread position:
               
161-332
               

               
Cow position:
               
chr11:70620126-70619952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
161-366
               

               
Cow position:
               
chr11:66424798-66425004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
164-384
               

               
Cow position:
               
chr11:30120585-30120807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
107, 12
               

               
Conread position:
               
165-384
               

               
Cow position:
               
chr11:58588422-58588206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
99, 39
               

               
Conread position:
               
171-384
               

               
Cow position:
               
chr11:82796217-82796427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 117
               

               
Conread position:
               
174-353
               

               
Cow position:
               
chr11:75965583-75965760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 108
               

               
Conread position:
               
174-354
               

               
Cow position:
               
chr11:69392631-69392446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
90, 114
               

               
Conread position:
               
175-378
               

               
Cow position:
               
chr11:7497579-7497778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 87
               

               
Conread position:
               
175-384
               

               
Cow position:
               
chr11:10620258-10620466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
7, 160
               

               
Conread position:
               
179-325
               

               
Cow position:
               
chr11:54218778-54218634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
85, 106
               

               
Conread position:
               
180-383
               

               
Cow position:
               
chr11:16261962-16262166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
84, 107
               

               
Conread position:
               
180-384
               

               
Cow position:
               
chr11:38874338-38874545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
180-384
               

               
Cow position:
               
chr11:65444781-65444989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
181-383
               

               
Cow position:
               
chr11:70273369-70273165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
5, 119
               

               
Conread position:
               
182-290
               

               
Cow position:
               
chr11:42452875-42452980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
182-382
               

               
Cow position:
               
chr11:67550317-67550512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
83, 91
               

               
Conread position:
               
182-384
               

               
Cow position:
               
chr11:24937726-24937523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
82, 194
               

               
Conread position:
               
183-385
               

               
Cow position:
               
chr11:3833302-3833495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
5, 45
               

               
Conread position:
               
185-368
               

               
Cow position:
               
chr11:80787849-80788034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
75, 100
               

               
Conread position:
               
185-384
               

               
Cow position:
               
chr11:34032145-34032344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 38
               

               
Conread position:
               
185-384
               

               
Cow position:
               
chr11:65409096-65409296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 53
               

               
Conread position:
               
187-374
               

               
Cow position:
               
chr11:21497578-21497390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
77, 99
               

               
Conread position:
               
187-384
               

               
Cow position:
               
chr11:49231929-49231735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 98
               

               
Conread position:
               
189-384
               

               
Cow position:
               
chr11:67804803-67804610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 93
               

               
Conread position:
               
191-366
               

               
Cow position:
               
chr11:18340989-18341164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
191-384
               

               
Cow position:
               
chr11:30911952-30912131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 13
               

               
Conread position:
               
191-384
               

               
Cow position:
               
chr11:41175897-41176091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 94
               

               
Conread position:
               
193-384
               

               
Cow position:
               
chr11:30597043-30596845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
194-368
               

               
Cow position:
               
chr11:42002899-42003069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
194-384
               

               
Cow position:
               
chr11:32378236-32378045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
194-384
               

               
Cow position:
               
chr11:41811866-41812051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 89
               

               
Conread position:
               
194-384
               

               
Cow position:
               
chr11:60143253-60143441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
198-368
               

               
Cow position:
               
chr11:485584-485756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 117
               

               
Conread position:
               
202-384
               

               
Cow position:
               
chr11:42792932-42793114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
61, 86
               

               
Conread position:
               
204-378
               

               
Cow position:
               
chr11:48041994-48042171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
204-382
               

               
Cow position:
               
chr11:57170791-57170969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
60, 81
               

               
Conread position:
               
204-384
               

               
Cow position:
               
chr11:955407-955224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 146
               

               
Conread position:
               
206-384
               

               
Cow position:
               
chr11:8339369-8339547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
59, 140
               

               
Conread position:
               
206-384
               

               
Cow position:
               
chr11:65431091-65430918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 55
               

               
Conread position:
               
207-384
               

               
Cow position:
               
chr11:18591398-18591573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 78
               

               
Conread position:
               
211-378
               

               
Cow position:
               
chr11:21427961-21428128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 88
               

               
Conread position:
               
211-384
               

               
Cow position:
               
chr11:6154440-6154271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
217-384
               

               
Cow position:
               
chr11:2309899-2309731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
24, 160
               

               
Conread position:
               
222-384
               

               
Cow position:
               
chr11:16251223-16251388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
224-383
               

               
Cow position:
               
chr11:33824869-33825031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
231-382
               

               
Cow position:
               
chr11:4412010-4412154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 47
               

               
Conread position:
               
244-384
               

               
Cow position:
               
chr11:70740978-70741117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
443-927
               

               
Cow position:
               
chr11:24315354-24314870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 131
               
Show alignments to all cow chromosomes.