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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8012I13.3
        

               
Conread position:
               
1-255
               

               
Cow position:
               
chr28:32015045-32014794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr28:5144251-5144630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr28:7697721-7698099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr28:4307635-4308023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
143, 24
               

               
Conread position:
               
2-247
               

               
Cow position:
               
chr28:3424040-3423795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 150
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr28:12662126-12662472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
17, 65
               

               
Conread position:
               
2-379
               

               
Cow position:
               
chr28:19262320-19262701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
59, 23
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr28:22332788-22332417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 54
               

               
Conread position:
               
5-378
               

               
Cow position:
               
chr28:30293327-30293698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
5-384
               

               
Cow position:
               
chr28:22371414-22371795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
6-368
               

               
Cow position:
               
chr28:15263462-15263819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
176, 24
               

               
Conread position:
               
7-214
               

               
Cow position:
               
chr28:9070141-9069939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
60, 19
               

               
Conread position:
               
7-283
               

               
Cow position:
               
chr28:26943899-26944177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 42
               

               
Conread position:
               
9-283
               

               
Cow position:
               
chr28:19127919-19128188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
9-378
               

               
Cow position:
               
chr28:24367688-24368045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
137, 44
               

               
Conread position:
               
11-214
               

               
Cow position:
               
chr28:2737272-2737467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
11-348
               

               
Cow position:
               
chr28:7350904-7350575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
15-383
               

               
Cow position:
               
chr28:8347982-8347613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 38
               

               
Conread position:
               
20-317
               

               
Cow position:
               
chr28:11059729-11059451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
239, 30
               

               
Conread position:
               
22-378
               

               
Cow position:
               
chr28:27313485-27313854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
36, 156
               

               
Conread position:
               
23-195
               

               
Cow position:
               
chr28:10140345-10140513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 6
               

               
Conread position:
               
24-225
               

               
Cow position:
               
chr28:6301322-6301121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
26-257
               

               
Cow position:
               
chr28:3137787-3137551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
28-234
               

               
Cow position:
               
chr28:26867917-26868120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
28-266
               

               
Cow position:
               
chr28:7557493-7557735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr28:21207142-21207374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
158, 36
               

               
Conread position:
               
28-348
               

               
Cow position:
               
chr28:2524178-2523858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
121, 63
               

               
Conread position:
               
29-205
               

               
Cow position:
               
chr28:16177484-16177314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
29-240
               

               
Cow position:
               
chr28:2077733-2077525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
112, 21
               

               
Conread position:
               
29-318
               

               
Cow position:
               
chr28:10964640-10964369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
233, 23
               

               
Conread position:
               
29-347
               

               
Cow position:
               
chr28:4810006-4809706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 58
               

               
Conread position:
               
29-378
               

               
Cow position:
               
chr28:26982508-26982849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
100, 24
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr28:11079533-11079188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
30-220
               

               
Cow position:
               
chr28:4866347-4866528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
30-274
               

               
Cow position:
               
chr28:1532240-1531997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 104
               

               
Conread position:
               
30-279
               

               
Cow position:
               
chr28:9705890-9705638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
73, 196
               

               
Conread position:
               
30-384
               

               
Cow position:
               
chr28:10863566-10863900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
234, 62
               

               
Conread position:
               
31-207
               

               
Cow position:
               
chr28:3257227-3257046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
31-249
               

               
Cow position:
               
chr28:34655240-34655021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
31-373
               

               
Cow position:
               
chr28:2801462-2801132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
31-378
               

               
Cow position:
               
chr28:3011038-3011385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
31-379
               

               
Cow position:
               
chr28:1315320-1315678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
116, 19
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr28:26328186-26327841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
202, 19
               

               
Conread position:
               
32-241
               

               
Cow position:
               
chr28:2892486-2892276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
114, 21
               

               
Conread position:
               
32-270
               

               
Cow position:
               
chr28:16879799-16879567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
232, 41
               

               
Conread position:
               
32-272
               

               
Cow position:
               
chr28:15362810-15362571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
134, 107
               

               
Conread position:
               
32-344
               

               
Cow position:
               
chr28:11348657-11348351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
32-383
               

               
Cow position:
               
chr28:31841121-31841452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
232, 17
               

               
Conread position:
               
32-384
               

               
Cow position:
               
chr28:751462-751110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
11, 153
               

               
Conread position:
               
32-384
               

               
Cow position:
               
chr28:14998294-14997946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 37
               

               
Conread position:
               
32-384
               

               
Cow position:
               
chr28:29416497-29416831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 20
               

               
Conread position:
               
33-347
               

               
Cow position:
               
chr28:13245794-13245478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
107, 31
               

               
Conread position:
               
33-383
               

               
Cow position:
               
chr28:11866440-11866782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
133, 10
               

               
Conread position:
               
34-215
               

               
Cow position:
               
chr28:24238258-24238427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
34-233
               

               
Cow position:
               
chr28:29500638-29500435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 194
               

               
Conread position:
               
34-241
               

               
Cow position:
               
chr28:28602981-28602776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
119, 19
               

               
Conread position:
               
34-272
               

               
Cow position:
               
chr28:10615719-10615954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
27, 58
               

               
Conread position:
               
34-285
               

               
Cow position:
               
chr28:7014683-7014432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
132, 30
               

               
Conread position:
               
34-302
               

               
Cow position:
               
chr28:8827390-8827127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
34-379
               

               
Cow position:
               
chr28:22813479-22813152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
34-382
               

               
Cow position:
               
chr28:33884625-33884292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
85, 18
               

               
Conread position:
               
34-384
               

               
Cow position:
               
chr28:1632422-1632774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
34-384
               

               
Cow position:
               
chr28:10845333-10845000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
35-254
               

               
Cow position:
               
chr28:7132152-7132371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
35-381
               

               
Cow position:
               
chr28:25129118-25128768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 117
               

               
Conread position:
               
36-378
               

               
Cow position:
               
chr28:8359134-8358793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
22, 146
               

               
Conread position:
               
37-272
               

               
Cow position:
               
chr28:5630325-5630090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
37-280
               

               
Cow position:
               
chr28:12991362-12991120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
203, 90
               

               
Conread position:
               
37-314
               

               
Cow position:
               
chr28:34843339-34843623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 116
               

               
Conread position:
               
37-379
               

               
Cow position:
               
chr28:9426126-9426463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
219, 16
               

               
Conread position:
               
37-382
               

               
Cow position:
               
chr28:4834617-4834958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 20
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr28:5193554-5193201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr28:9100154-9099817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
38-241
               

               
Cow position:
               
chr28:3678585-3678386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
38-345
               

               
Cow position:
               
chr28:28765677-28765984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 20
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr28:10057363-10057701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
38-379
               

               
Cow position:
               
chr28:5577758-5577412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
38-384
               

               
Cow position:
               
chr28:3449534-3449181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
137, 26
               

               
Conread position:
               
38-386
               

               
Cow position:
               
chr28:28631979-28631611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 152
               

               
Conread position:
               
39-257
               

               
Cow position:
               
chr28:12974107-12973889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
105, 14
               

               
Conread position:
               
39-270
               

               
Cow position:
               
chr28:21008446-21008671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
225, 54
               

               
Conread position:
               
39-272
               

               
Cow position:
               
chr28:6563671-6563906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
39-274
               

               
Cow position:
               
chr28:13133858-13133622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
39-334
               

               
Cow position:
               
chr28:7805195-7805492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
39-384
               

               
Cow position:
               
chr28:5818062-5817724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
153, 25
               

               
Conread position:
               
40-378
               

               
Cow position:
               
chr28:23410108-23410437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
26, 84
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chr28:4016742-4016420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 11
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chr28:6091582-6091245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
16, 83
               

               
Conread position:
               
41-212
               

               
Cow position:
               
chr28:8384097-8383914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
42-384
               

               
Cow position:
               
chr28:5236373-5236717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
96, 151
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chr28:5232161-5231919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 119
               

               
Conread position:
               
45-342
               

               
Cow position:
               
chr28:3741086-3740804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
219, 20
               

               
Conread position:
               
45-348
               

               
Cow position:
               
chr28:1099458-1099742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
252, 82
               

               
Conread position:
               
45-384
               

               
Cow position:
               
chr28:7008761-7009093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
46-378
               

               
Cow position:
               
chr28:23460361-23460039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
46-384
               

               
Cow position:
               
chr28:14720567-14720895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
46-384
               

               
Cow position:
               
chr28:16204112-16204447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 241
               

               
Conread position:
               
47-310
               

               
Cow position:
               
chr28:11987382-11987126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
47-310
               

               
Cow position:
               
chr28:12055620-12055364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
47-339
               

               
Cow position:
               
chr28:3410772-3411066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
147, 96
               

               
Conread position:
               
47-384
               

               
Cow position:
               
chr28:5074303-5074628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
47-413
               

               
Cow position:
               
chr28:11346272-11346630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
212, 95
               

               
Conread position:
               
48-217
               

               
Cow position:
               
chr28:27787779-27787614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
48-228
               

               
Cow position:
               
chr28:26960697-26960872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
48-257
               

               
Cow position:
               
chr28:9109427-9109224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
48-309
               

               
Cow position:
               
chr28:28561113-28560852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
48-368
               

               
Cow position:
               
chr28:11307303-11307610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 16
               

               
Conread position:
               
48-368
               

               
Cow position:
               
chr28:16416859-16416543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr28:16918958-16919278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 84
               

               
Conread position:
               
48-404
               

               
Cow position:
               
chr28:5684917-5684574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
49-236
               

               
Cow position:
               
chr28:17943939-17943759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
49-249
               

               
Cow position:
               
chr28:26530653-26530850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
49-271
               

               
Cow position:
               
chr28:17948902-17949120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
215, 79
               

               
Conread position:
               
49-273
               

               
Cow position:
               
chr28:8396540-8396326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
215, 31
               

               
Conread position:
               
49-376
               

               
Cow position:
               
chr28:34247826-34248133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
49-381
               

               
Cow position:
               
chr28:11527044-11527374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 78
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr28:5436871-5437206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 142
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr28:21845166-21844841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 42
               

               
Conread position:
               
49-442
               

               
Cow position:
               
chr28:10588818-10589195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 78
               

               
Conread position:
               
50-241
               

               
Cow position:
               
chr28:13370925-13371123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
50-244
               

               
Cow position:
               
chr28:10959013-10958823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
116, 91
               

               
Conread position:
               
50-247
               

               
Cow position:
               
chr28:1654876-1655076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
106, 137
               

               
Conread position:
               
50-249
               

               
Cow position:
               
chr28:7644960-7644756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 129
               

               
Conread position:
               
50-251
               

               
Cow position:
               
chr28:7964465-7964663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
50-252
               

               
Cow position:
               
chr28:659073-659282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 142
               

               
Conread position:
               
50-254
               

               
Cow position:
               
chr28:5674086-5673886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
50-257
               

               
Cow position:
               
chr28:16362325-16362526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
50-260
               

               
Cow position:
               
chr28:3759211-3758997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
83, 194
               

               
Conread position:
               
50-271
               

               
Cow position:
               
chr28:19217027-19216815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
50-274
               

               
Cow position:
               
chr28:11743613-11743829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
50-274
               

               
Cow position:
               
chr28:13048065-13048293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 129
               

               
Conread position:
               
50-299
               

               
Cow position:
               
chr28:11816469-11816702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
50-368
               

               
Cow position:
               
chr28:4881035-4881339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
215, 35
               

               
Conread position:
               
50-376
               

               
Cow position:
               
chr28:19564019-19564338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
50-377
               

               
Cow position:
               
chr28:5200040-5199711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr28:4643556-4643876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
107, 72
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr28:23447621-23447936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
96, 14
               

               
Conread position:
               
50-381
               

               
Cow position:
               
chr28:10606424-10606743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
115, 57
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr28:1838211-1837876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
11, 170
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr28:23296532-23296206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
114, 15
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr28:4071172-4070851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 36
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr28:4159178-4158840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 234
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr28:4884039-4884381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 95
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr28:8140699-8140364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr28:11584994-11585323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr28:11828745-11829056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 178
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr28:12598550-12598231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
114, 76
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr28:12964797-12964451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 143
               

               
Conread position:
               
50-385
               

               
Cow position:
               
chr28:23531077-23530749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
214, 41
               

               
Conread position:
               
50-395
               

               
Cow position:
               
chr28:3484800-3484449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 103
               

               
Conread position:
               
51-235
               

               
Cow position:
               
chr28:21744926-21744745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
51-331
               

               
Cow position:
               
chr28:4823815-4823541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
51-365
               

               
Cow position:
               
chr28:10053120-10053432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
190, 6
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr28:11884318-11884638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 35
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr28:22346236-22345901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
52-209
               

               
Cow position:
               
chr28:7750809-7750960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
52-249
               

               
Cow position:
               
chr28:2777742-2777546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
52-249
               

               
Cow position:
               
chr28:11398581-11398781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
52-249
               

               
Cow position:
               
chr28:11411327-11411517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
112, 69
               

               
Conread position:
               
52-272
               

               
Cow position:
               
chr28:19038804-19039027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 101
               

               
Conread position:
               
52-292
               

               
Cow position:
               
chr28:8304454-8304221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
191, 77
               

               
Conread position:
               
52-303
               

               
Cow position:
               
chr28:2279390-2279626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
212, 68
               

               
Conread position:
               
52-328
               

               
Cow position:
               
chr28:3445267-3445545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
52-378
               

               
Cow position:
               
chr28:18625449-18625117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
104, 131
               

               
Conread position:
               
52-383
               

               
Cow position:
               
chr28:30937471-30937780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 34
               

               
Conread position:
               
52-384
               

               
Cow position:
               
chr28:20124992-20124665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 12
               

               
Conread position:
               
53-230
               

               
Cow position:
               
chr28:8681226-8681395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
53-270
               

               
Cow position:
               
chr28:26826435-26826217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
23, 120
               

               
Conread position:
               
53-274
               

               
Cow position:
               
chr28:4006994-4006776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
53-282
               

               
Cow position:
               
chr28:4101724-4101502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
53-314
               

               
Cow position:
               
chr28:3725997-3726262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 92
               

               
Conread position:
               
53-327
               

               
Cow position:
               
chr28:12088435-12088708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
107, 86
               

               
Conread position:
               
53-351
               

               
Cow position:
               
chr28:777887-777580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 98
               

               
Conread position:
               
53-352
               

               
Cow position:
               
chr28:3143673-3143972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
53-368
               

               
Cow position:
               
chr28:7371898-7372224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 53
               

               
Conread position:
               
53-381
               

               
Cow position:
               
chr28:4089850-4090163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
214, 18
               

               
Conread position:
               
53-383
               

               
Cow position:
               
chr28:25727580-25727260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 34
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr28:3078485-3078799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
111, 58
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr28:4440509-4440185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr28:8787750-8787421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 92
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr28:16085530-16085205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 59
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr28:27218535-27218206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
96, 12
               

               
Conread position:
               
53-390
               

               
Cow position:
               
chr28:9740669-9740341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
44, 71
               

               
Conread position:
               
53-394
               

               
Cow position:
               
chr28:11422608-11422947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 39
               

               
Conread position:
               
54-240
               

               
Cow position:
               
chr28:8936358-8936175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
54-274
               

               
Cow position:
               
chr28:20174049-20173826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 105
               

               
Conread position:
               
54-333
               

               
Cow position:
               
chr28:4013293-4013019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 98
               

               
Conread position:
               
54-352
               

               
Cow position:
               
chr28:4182211-4181917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 65
               

               
Conread position:
               
54-366
               

               
Cow position:
               
chr28:34877762-34878070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 171
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr28:16369879-16370194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 56
               

               
Conread position:
               
55-245
               

               
Cow position:
               
chr28:2151230-2151420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
55-384
               

               
Cow position:
               
chr28:12951626-12951310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
9, 91
               

               
Conread position:
               
55-384
               

               
Cow position:
               
chr28:26719540-26719232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
5, 72
               

               
Conread position:
               
55-386
               

               
Cow position:
               
chr28:3492577-3492905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 72
               

               
Conread position:
               
56-230
               

               
Cow position:
               
chr28:11305427-11305598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
56-384
               

               
Cow position:
               
chr28:13527406-13527085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
57-250
               

               
Cow position:
               
chr28:10203319-10203134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
57-253
               

               
Cow position:
               
chr28:17680832-17680634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
57-263
               

               
Cow position:
               
chr28:28501449-28501235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 179
               

               
Conread position:
               
57-274
               

               
Cow position:
               
chr28:8259839-8259618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
92, 131
               

               
Conread position:
               
57-290
               

               
Cow position:
               
chr28:7131884-7132112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
150, 84
               

               
Conread position:
               
57-296
               

               
Cow position:
               
chr28:5255078-5254845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 82
               

               
Conread position:
               
57-328
               

               
Cow position:
               
chr28:7618953-7619215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
207, 48
               

               
Conread position:
               
57-382
               

               
Cow position:
               
chr28:25057163-25056854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 35
               

               
Conread position:
               
57-383
               

               
Cow position:
               
chr28:5204392-5204075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 35
               

               
Conread position:
               
57-383
               

               
Cow position:
               
chr28:20409598-20409275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
87, 71
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr28:5273220-5273556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 121
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr28:11426341-11426660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 71
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr28:13474506-13474182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr28:30746531-30746846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
114, 50
               

               
Conread position:
               
57-406
               

               
Cow position:
               
chr28:662307-661972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
58-213
               

               
Cow position:
               
chr28:4588520-4588370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
58-241
               

               
Cow position:
               
chr28:22085340-22085518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
58-244
               

               
Cow position:
               
chr28:5609712-5609896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
107, 87
               

               
Conread position:
               
58-272
               

               
Cow position:
               
chr28:5236080-5235873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
206, 87
               

               
Conread position:
               
58-275
               

               
Cow position:
               
chr28:4364617-4364833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
58-325
               

               
Cow position:
               
chr28:20759487-20759761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
77, 146
               

               
Conread position:
               
58-332
               

               
Cow position:
               
chr28:17012099-17012358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
206, 33
               

               
Conread position:
               
58-332
               

               
Cow position:
               
chr28:19361945-19361673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
58-377
               

               
Cow position:
               
chr28:11762904-11762586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
91, 116
               

               
Conread position:
               
58-384
               

               
Cow position:
               
chr28:30326895-30327209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
208, 70
               

               
Conread position:
               
59-247
               

               
Cow position:
               
chr28:10196665-10196847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
106, 62
               

               
Conread position:
               
59-262
               

               
Cow position:
               
chr28:24996413-24996610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
40, 70
               

               
Conread position:
               
59-268
               

               
Cow position:
               
chr28:30902326-30902122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
205, 81
               

               
Conread position:
               
59-272
               

               
Cow position:
               
chr28:32358309-32358100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
205, 74
               

               
Conread position:
               
59-383
               

               
Cow position:
               
chr28:21103615-21103952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
77, 118
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr28:4282284-4282608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
90, 122
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr28:25973747-25973415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 128
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr28:34230436-34230112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
87, 136
               

               
Conread position:
               
60-214
               

               
Cow position:
               
chr28:4077133-4077295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
60-265
               

               
Cow position:
               
chr28:4876642-4876443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
60-273
               

               
Cow position:
               
chr28:5805866-5805662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
132, 31
               

               
Conread position:
               
60-274
               

               
Cow position:
               
chr28:26810885-26810669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 66
               

               
Conread position:
               
60-279
               

               
Cow position:
               
chr28:29850618-29850830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
39, 31
               

               
Conread position:
               
60-282
               

               
Cow position:
               
chr28:11016608-11016390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
159, 80
               

               
Conread position:
               
60-304
               

               
Cow position:
               
chr28:17740029-17739785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
84, 177
               

               
Conread position:
               
60-321
               

               
Cow position:
               
chr28:6934972-6935238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 130
               

               
Conread position:
               
60-347
               

               
Cow position:
               
chr28:5138795-5139078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 67
               

               
Conread position:
               
60-364
               

               
Cow position:
               
chr28:11197468-11197771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
87, 127
               

               
Conread position:
               
60-368
               

               
Cow position:
               
chr28:21502586-21502293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
199, 35
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr28:9636253-9636571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr28:21868661-21868337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 91
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr28:23616609-23616289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
199, 88
               

               
Conread position:
               
61-262
               

               
Cow position:
               
chr28:16856903-16857104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 124
               

               
Conread position:
               
61-303
               

               
Cow position:
               
chr28:4186106-4185867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
221, 81
               

               
Conread position:
               
61-382
               

               
Cow position:
               
chr28:3746400-3746089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
185, 81
               

               
Conread position:
               
61-382
               

               
Cow position:
               
chr28:12672258-12672577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 127
               

               
Conread position:
               
61-384
               

               
Cow position:
               
chr28:12430808-12430489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
61-384
               

               
Cow position:
               
chr28:23007539-23007852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
201, 66
               

               
Conread position:
               
62-262
               

               
Cow position:
               
chr28:19994744-19994943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
82, 126
               

               
Conread position:
               
62-272
               

               
Cow position:
               
chr28:18797512-18797312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
202, 60
               

               
Conread position:
               
62-273
               

               
Cow position:
               
chr28:24646785-24646584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
200, 24
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr28:3023714-3024030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr28:9285175-9285492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 71
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr28:24672470-24672146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
24, 28
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr28:33163274-33163582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
202, 66
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr28:34430221-34430541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
87, 115
               

               
Conread position:
               
63-258
               

               
Cow position:
               
chr28:10890541-10890728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
63-289
               

               
Cow position:
               
chr28:6975435-6975216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
201, 63
               

               
Conread position:
               
64-255
               

               
Cow position:
               
chr28:20968376-20968570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 100
               

               
Conread position:
               
64-378
               

               
Cow position:
               
chr28:25806797-25806460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
68, 242
               

               
Conread position:
               
64-384
               

               
Cow position:
               
chr28:22308844-22308530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
85, 114
               

               
Conread position:
               
64-384
               

               
Cow position:
               
chr28:24082470-24082149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 89
               

               
Conread position:
               
65-384
               

               
Cow position:
               
chr28:7267750-7268054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
199, 76
               

               
Conread position:
               
65-384
               

               
Cow position:
               
chr28:34134052-34133744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
197, 14
               

               
Conread position:
               
68-220
               

               
Cow position:
               
chr28:4166771-4166619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
69-373
               

               
Cow position:
               
chr28:12362965-12363268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
71-275
               

               
Cow position:
               
chr28:5711818-5712012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
72-265
               

               
Cow position:
               
chr28:4877240-4877431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 26
               

               
Conread position:
               
72-289
               

               
Cow position:
               
chr28:26531089-26531300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
72-290
               

               
Cow position:
               
chr28:27721888-27721676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
210, 76
               

               
Conread position:
               
72-330
               

               
Cow position:
               
chr28:9684145-9684398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
192, 57
               

               
Conread position:
               
72-348
               

               
Cow position:
               
chr28:4046036-4045770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
72-367
               

               
Cow position:
               
chr28:17071532-17071232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
75, 104
               

               
Conread position:
               
72-379
               

               
Cow position:
               
chr28:12933544-12933844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
174, 20
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr28:3914897-3914596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 50
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr28:4913900-4914216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
130, 86
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr28:16346346-16346645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 14
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr28:21363932-21363628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
73-361
               

               
Cow position:
               
chr28:26743822-26743528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
61, 224
               

               
Conread position:
               
74-214
               

               
Cow position:
               
chr28:4100574-4100708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
74-325
               

               
Cow position:
               
chr28:20397176-20397430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 212
               

               
Conread position:
               
75-384
               

               
Cow position:
               
chr28:22323448-22323149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 73
               

               
Conread position:
               
76-290
               

               
Cow position:
               
chr28:3200650-3200433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
79-366
               

               
Cow position:
               
chr28:34442571-34442856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 96
               

               
Conread position:
               
79-382
               

               
Cow position:
               
chr28:7512396-7512704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 97
               

               
Conread position:
               
79-384
               

               
Cow position:
               
chr28:657280-657567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
186, 49
               

               
Conread position:
               
80-368
               

               
Cow position:
               
chr28:10745399-10745110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
76, 94
               

               
Conread position:
               
83-348
               

               
Cow position:
               
chr28:30237933-30238189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 73
               

               
Conread position:
               
83-368
               

               
Cow position:
               
chr28:26055659-26055373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
176, 58
               

               
Conread position:
               
83-378
               

               
Cow position:
               
chr28:4138486-4138783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
64, 96
               

               
Conread position:
               
88-267
               

               
Cow position:
               
chr28:27429202-27429028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
175, 34
               

               
Conread position:
               
94-369
               

               
Cow position:
               
chr28:3408052-3408311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
170, 34
               

               
Conread position:
               
95-348
               

               
Cow position:
               
chr28:7927338-7927092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
170, 44
               

               
Conread position:
               
95-384
               

               
Cow position:
               
chr28:26103867-26103592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
154, 46
               

               
Conread position:
               
97-384
               

               
Cow position:
               
chr28:11686851-11687147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
44, 110
               

               
Conread position:
               
101-378
               

               
Cow position:
               
chr28:4355709-4355443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
181, 8
               

               
Conread position:
               
102-256
               

               
Cow position:
               
chr28:10212266-10212418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
105-373
               

               
Cow position:
               
chr28:26533705-26533442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
48, 71
               

               
Conread position:
               
116-383
               

               
Cow position:
               
chr28:25728342-25728081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
148, 37
               

               
Conread position:
               
128-378
               

               
Cow position:
               
chr28:12619712-12619454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr28:28164220-28163968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
143, 25
               

               
Conread position:
               
129-347
               

               
Cow position:
               
chr28:12070365-12070154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
163, 27
               

               
Conread position:
               
129-358
               

               
Cow position:
               
chr28:7388636-7388860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
135, 89
               

               
Conread position:
               
129-378
               

               
Cow position:
               
chr28:2899123-2898886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 23
               

               
Conread position:
               
129-378
               

               
Cow position:
               
chr28:20313413-20313163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
135, 164
               

               
Conread position:
               
129-383
               

               
Cow position:
               
chr28:6971212-6971461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
135, 219
               

               
Conread position:
               
129-392
               

               
Cow position:
               
chr28:32174763-32174503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
111, 27
               

               
Conread position:
               
129-394
               

               
Cow position:
               
chr28:19222014-19222278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
25, 170
               

               
Conread position:
               
130-383
               

               
Cow position:
               
chr28:13865975-13865725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
26, 60
               

               
Conread position:
               
130-384
               

               
Cow position:
               
chr28:11752008-11752259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
134, 15
               

               
Conread position:
               
131-303
               

               
Cow position:
               
chr28:7498013-7498186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
131-377
               

               
Cow position:
               
chr28:2752360-2752605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
128, 152
               

               
Conread position:
               
131-378
               

               
Cow position:
               
chr28:27161195-27161440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
131-383
               

               
Cow position:
               
chr28:26220392-26220138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 75
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr28:2131790-2132039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
133, 155
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr28:14649479-14649230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr28:19025871-19026130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr28:19079709-19079963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 64
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr28:21355363-21355106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr28:25249486-25249236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr28:31109869-31110124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
132-272
               

               
Cow position:
               
chr28:8149501-8149640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
132, 20
               

               
Conread position:
               
132-381
               

               
Cow position:
               
chr28:2960696-2960947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
15, 164
               

               
Conread position:
               
132-384
               

               
Cow position:
               
chr28:33052169-33051910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
133-352
               

               
Cow position:
               
chr28:25677209-25677433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
133-384
               

               
Cow position:
               
chr28:2873048-2872799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
131, 17
               

               
Conread position:
               
134-358
               

               
Cow position:
               
chr28:30865548-30865327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
132, 81
               

               
Conread position:
               
134-384
               

               
Cow position:
               
chr28:10172286-10172528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
130, 69
               

               
Conread position:
               
134-384
               

               
Cow position:
               
chr28:25596761-25596514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
20, 90
               

               
Conread position:
               
140-373
               

               
Cow position:
               
chr28:13608022-13607778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
146-320
               

               
Cow position:
               
chr28:4438831-4438655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 152
               

               
Conread position:
               
146-397
               

               
Cow position:
               
chr28:6059351-6059598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
118, 139
               

               
Conread position:
               
147-286
               

               
Cow position:
               
chr28:3147597-3147459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
117, 74
               

               
Conread position:
               
147-372
               

               
Cow position:
               
chr28:16245947-16246169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
113, 75
               

               
Conread position:
               
147-384
               

               
Cow position:
               
chr28:7865447-7865206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
148-383
               

               
Cow position:
               
chr28:18354210-18354441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
148-384
               

               
Cow position:
               
chr28:21598133-21598372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
19, 148
               

               
Conread position:
               
151-270
               

               
Cow position:
               
chr28:25675391-25675511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
151-380
               

               
Cow position:
               
chr28:4188668-4188416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
89, 237
               

               
Conread position:
               
151-384
               

               
Cow position:
               
chr28:2862982-2862747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
152-316
               

               
Cow position:
               
chr28:2762308-2762143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
112, 129
               

               
Conread position:
               
152-380
               

               
Cow position:
               
chr28:4841277-4841506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 179
               

               
Conread position:
               
152-384
               

               
Cow position:
               
chr28:18591383-18591155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
112, 70
               

               
Conread position:
               
152-384
               

               
Cow position:
               
chr28:26614986-26614766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
112, 125
               

               
Conread position:
               
152-385
               

               
Cow position:
               
chr28:3169076-3169314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
153-337
               

               
Cow position:
               
chr28:4179663-4179482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
111, 81
               

               
Conread position:
               
153-384
               

               
Cow position:
               
chr28:12892325-12892552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
183, 90
               

               
Conread position:
               
153-384
               

               
Cow position:
               
chr28:32365955-32365728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
111, 8
               

               
Conread position:
               
153-385
               

               
Cow position:
               
chr28:15043750-15043981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
111, 66
               

               
Conread position:
               
154-384
               

               
Cow position:
               
chr28:8021992-8022227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
110, 57
               

               
Conread position:
               
155-383
               

               
Cow position:
               
chr28:14512643-14512405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 231
               

               
Conread position:
               
155-384
               

               
Cow position:
               
chr28:5128618-5128844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
36, 140
               

               
Conread position:
               
161-378
               

               
Cow position:
               
chr28:26922264-26922479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
103, 127
               

               
Conread position:
               
161-379
               

               
Cow position:
               
chr28:24018088-24017884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
193, 93
               

               
Conread position:
               
161-384
               

               
Cow position:
               
chr28:11786613-11786831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 132
               

               
Conread position:
               
162-383
               

               
Cow position:
               
chr28:23676241-23676023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
102, 123
               

               
Conread position:
               
165-384
               

               
Cow position:
               
chr28:18186656-18186436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
139, 107
               

               
Conread position:
               
172-384
               

               
Cow position:
               
chr28:8408827-8408616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
92, 117
               

               
Conread position:
               
174-384
               

               
Cow position:
               
chr28:13267881-13267667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
181-384
               

               
Cow position:
               
chr28:21380966-21380760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
5, 105
               

               
Conread position:
               
182-384
               

               
Cow position:
               
chr28:4536542-4536338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
190-384
               

               
Cow position:
               
chr28:10533860-10534050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
115, 70
               

               
Conread position:
               
195-378
               

               
Cow position:
               
chr28:12947019-12946836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
56, 66
               

               
Conread position:
               
196-385
               

               
Cow position:
               
chr28:7548989-7549179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
68, 96
               

               
Conread position:
               
199-384
               

               
Cow position:
               
chr28:4588163-4587981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
203-384
               

               
Cow position:
               
chr28:7751239-7751415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
204-384
               

               
Cow position:
               
chr28:2737745-2737926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 80
               

               
Conread position:
               
205-383
               

               
Cow position:
               
chr28:3256858-3256680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
63, 77
               

               
Conread position:
               
217-384
               

               
Cow position:
               
chr28:5904780-5904614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
236-384
               

               
Cow position:
               
chr28:7607947-7608098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 49
               
Show alignments to all cow chromosomes.