Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8012I13.3
        

               Conread position:
               1-273
               

               Cow position:
               chr5:60212872-60212596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               40, 53
               

               Conread position:
               1-348
               

               Cow position:
               chr5:20843116-20843462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               231
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               118, 36
               

               Conread position:
               1-384
               

               Cow position:
               chr5:51053369-51053746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               258
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               139, 30
               

               Conread position:
               1-384
               

               Cow position:
               chr5:64026735-64027106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               267
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               143, 28
               

               Conread position:
               2-249
               

               Cow position:
               chr5:40122315-40122573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               48, 193
               

               Conread position:
               2-272
               

               Cow position:
               chr5:51246855-51247118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               22, 56
               

               Conread position:
               2-272
               

               Cow position:
               chr5:57062249-57062516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               107, 21
               

               Conread position:
               2-296
               

               Cow position:
               chr5:34914767-34915062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               213
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               59, 154
               

               Conread position:
               2-338
               

               Cow position:
               chr5:57393022-57393354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               23, 48
               

               Conread position:
               2-384
               

               Cow position:
               chr5:44673987-44673589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               256
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               29, 51
               

               Conread position:
               5-378
               

               Cow position:
               chr5:16937761-16938099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               259, 17
               

               Conread position:
               7-410
               

               Cow position:
               chr5:12874026-12873621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               271
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               97, 18
               

               Conread position:
               8-346
               

               Cow position:
               chr5:66531188-66530858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               255, 14
               

               Conread position:
               8-384
               

               Cow position:
               chr5:20128334-20127957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               34, 172
               

               Conread position:
               9-272
               

               Cow position:
               chr5:2240714-2240976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               18, 54
               

               Conread position:
               10-383
               

               Cow position:
               chr5:30845382-30845016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               258
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               254, 118
               

               Conread position:
               10-384
               

               Cow position:
               chr5:44049974-44049600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               248
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               144, 27
               

               Conread position:
               12-217
               

               Cow position:
               chr5:32976032-32975827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               132, 38
               

               Conread position:
               12-246
               

               Cow position:
               chr5:61043459-61043226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               144, 36
               

               Conread position:
               12-384
               

               Cow position:
               chr5:57074061-57074432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 76
               

               Conread position:
               12-386
               

               Cow position:
               chr5:58519140-58519499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               19, 79
               

               Conread position:
               20-378
               

               Cow position:
               chr5:3282100-3281746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               127, 30
               

               Conread position:
               23-384
               

               Cow position:
               chr5:35246845-35247208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 31
               

               Conread position:
               25-164
               

               Cow position:
               chr5:13471371-13471230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               106
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               25-228
               

               Cow position:
               chr5:18579152-18578952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               36, 27
               

               Conread position:
               25-248
               

               Cow position:
               chr5:54127550-54127328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               35, 118
               

               Conread position:
               26-382
               

               Cow position:
               chr5:22738358-22738010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               235
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               37, 126
               

               Conread position:
               26-384
               

               Cow position:
               chr5:57591942-57591596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               349, 11
               

               Conread position:
               27-249
               

               Cow position:
               chr5:62341291-62341065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               45, 69
               

               Conread position:
               28-209
               

               Cow position:
               chr5:56624258-56624440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               118, 25
               

               Conread position:
               28-238
               

               Cow position:
               chr5:45854759-45854539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               99, 161
               

               Conread position:
               28-384
               

               Cow position:
               chr5:64555787-64555432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               126, 25
               

               Conread position:
               29-252
               

               Cow position:
               chr5:58756150-58756372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               159, 21
               

               Conread position:
               29-271
               

               Cow position:
               chr5:57303032-57302782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               26, 221
               

               Conread position:
               29-272
               

               Cow position:
               chr5:65679720-65679957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               235, 56
               

               Conread position:
               29-321
               

               Cow position:
               chr5:269845-270138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               140, 20
               

               Conread position:
               29-374
               

               Cow position:
               chr5:65140557-65140199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               243
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               116, 147
               

               Conread position:
               29-378
               

               Cow position:
               chr5:30178247-30178599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               117, 24
               

               Conread position:
               29-384
               

               Cow position:
               chr5:46512513-46512861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 28
               

               Conread position:
               30-241
               

               Cow position:
               chr5:54751066-54750852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               45, 34
               

               Conread position:
               30-272
               

               Cow position:
               chr5:52853219-52852984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               135, 23
               

               Conread position:
               30-378
               

               Cow position:
               chr5:28330086-28330425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               117, 34
               

               Conread position:
               30-378
               

               Cow position:
               chr5:48154208-48154566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               121, 34
               

               Conread position:
               31-266
               

               Cow position:
               chr5:44312161-44312394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               157, 22
               

               Conread position:
               31-281
               

               Cow position:
               chr5:50824841-50824596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               190
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               43, 99
               

               Conread position:
               31-282
               

               Cow position:
               chr5:67679436-67679182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               14, 34
               

               Conread position:
               31-283
               

               Cow position:
               chr5:20394592-20394336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               49, 22
               

               Conread position:
               31-288
               

               Cow position:
               chr5:11562473-11562727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               135, 52
               

               Conread position:
               31-296
               

               Cow position:
               chr5:56549618-56549353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               116, 23
               

               Conread position:
               31-297
               

               Cow position:
               chr5:46540802-46541067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               202
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               16, 117
               

               Conread position:
               31-343
               

               Cow position:
               chr5:12149803-12149482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               212
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               57, 19
               

               Conread position:
               31-343
               

               Cow position:
               chr5:57265649-57265962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               123, 26
               

               Conread position:
               31-384
               

               Cow position:
               chr5:14550333-14550680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 20
               

               Conread position:
               31-384
               

               Cow position:
               chr5:69461586-69461236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 22
               

               Conread position:
               31-386
               

               Cow position:
               chr5:65883371-65883731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               230
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               123, 33
               

               Conread position:
               31-394
               

               Cow position:
               chr5:4322667-4322298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               132, 25
               

               Conread position:
               32-244
               

               Cow position:
               chr5:48061856-48062075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               46, 21
               

               Conread position:
               32-250
               

               Cow position:
               chr5:8146106-8146329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               54, 38
               

               Conread position:
               32-292
               

               Cow position:
               chr5:55965639-55965901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               114, 25
               

               Conread position:
               32-331
               

               Cow position:
               chr5:52001372-52001666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               117, 21
               

               Conread position:
               32-357
               

               Cow position:
               chr5:19972748-19973083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               7, 33
               

               Conread position:
               32-384
               

               Cow position:
               chr5:35685186-35684840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 25
               

               Conread position:
               32-384
               

               Cow position:
               chr5:36868989-36868641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               56, 21
               

               Conread position:
               32-384
               

               Cow position:
               chr5:40889044-40889382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               144, 18
               

               Conread position:
               32-384
               

               Cow position:
               chr5:43370941-43371296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               249
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               107, 21
               

               Conread position:
               32-384
               

               Cow position:
               chr5:57767730-57768081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               242
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               26, 63
               

               Conread position:
               32-384
               

               Cow position:
               chr5:66257888-66257541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 107
               

               Conread position:
               33-252
               

               Cow position:
               chr5:17826439-17826219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               121, 143
               

               Conread position:
               33-272
               

               Cow position:
               chr5:53055308-53055548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               111, 20
               

               Conread position:
               33-282
               

               Cow position:
               chr5:29468028-29468277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               40, 31
               

               Conread position:
               33-322
               

               Cow position:
               chr5:26548892-26549178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 17
               

               Conread position:
               33-345
               

               Cow position:
               chr5:59395914-59395598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               114, 17
               

               Conread position:
               33-351
               

               Cow position:
               chr5:52728760-52729081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               103, 20
               

               Conread position:
               33-377
               

               Cow position:
               chr5:25366351-25366000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               207, 31
               

               Conread position:
               33-384
               

               Cow position:
               chr5:50942906-50943248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               23, 112
               

               Conread position:
               33-411
               

               Cow position:
               chr5:40152742-40152350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               259
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               21, 156
               

               Conread position:
               34-233
               

               Cow position:
               chr5:60100710-60100523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               34-233
               

               Cow position:
               chr5:60154015-60153828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               34-263
               

               Cow position:
               chr5:63172796-63173021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               158, 108
               

               Conread position:
               34-297
               

               Cow position:
               chr5:70678392-70678656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               21, 152
               

               Conread position:
               34-384
               

               Cow position:
               chr5:55966627-55966977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               248
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               95, 19
               

               Conread position:
               34-384
               

               Cow position:
               chr5:65753123-65752758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 143
               

               Conread position:
               34-384
               

               Cow position:
               chr5:66972683-66972329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               247
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               18, 72
               

               Conread position:
               34-384
               

               Cow position:
               chr5:73167759-73168100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               239
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               25, 115
               

               Conread position:
               35-238
               

               Cow position:
               chr5:34347487-34347686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               129, 16
               

               Conread position:
               36-225
               

               Cow position:
               chr5:59662809-59662997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               110, 16
               

               Conread position:
               36-245
               

               Cow position:
               chr5:43839750-43839958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               108, 17
               

               Conread position:
               36-270
               

               Cow position:
               chr5:47743870-47743643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               228, 31
               

               Conread position:
               36-356
               

               Cow position:
               chr5:59626725-59627044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 15
               

               Conread position:
               37-224
               

               Cow position:
               chr5:56477454-56477268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               145, 36
               

               Conread position:
               37-230
               

               Cow position:
               chr5:20345787-20345593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               107, 139
               

               Conread position:
               37-257
               

               Cow position:
               chr5:49821678-49821457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               107, 14
               

               Conread position:
               37-272
               

               Cow position:
               chr5:5016670-5016442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               38, 16
               

               Conread position:
               37-300
               

               Cow position:
               chr5:17105096-17104839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 98
               

               Conread position:
               37-343
               

               Cow position:
               chr5:30406462-30406149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               52, 27
               

               Conread position:
               37-355
               

               Cow position:
               chr5:44847778-44848089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               206, 106
               

               Conread position:
               37-373
               

               Cow position:
               chr5:45409572-45409239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               117, 16
               

               Conread position:
               37-384
               

               Cow position:
               chr5:5938574-5938226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               132, 36
               

               Conread position:
               37-384
               

               Cow position:
               chr5:9893875-9894227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 59
               

               Conread position:
               37-384
               

               Cow position:
               chr5:60175737-60175371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               30, 45
               

               Conread position:
               37-384
               

               Cow position:
               chr5:69338063-69337731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               227, 73
               

               Conread position:
               38-238
               

               Cow position:
               chr5:63187628-63187829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               109, 140
               

               Conread position:
               38-241
               

               Cow position:
               chr5:31648658-31648465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               154, 22
               

               Conread position:
               38-326
               

               Cow position:
               chr5:31052635-31052345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               144, 19
               

               Conread position:
               38-331
               

               Cow position:
               chr5:37255087-37255383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               116, 15
               

               Conread position:
               38-337
               

               Cow position:
               chr5:30419220-30418923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               144, 15
               

               Conread position:
               39-240
               

               Cow position:
               chr5:55162874-55162672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               105, 14
               

               Conread position:
               39-272
               

               Cow position:
               chr5:4267910-4267683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               14, 81
               

               Conread position:
               39-273
               

               Cow position:
               chr5:28681271-28681505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               122, 14
               

               Conread position:
               39-383
               

               Cow position:
               chr5:52040071-52040415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               47, 25
               

               Conread position:
               39-384
               

               Cow position:
               chr5:32975311-32975651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               109, 139
               

               Conread position:
               39-384
               

               Cow position:
               chr5:39447278-39447628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               95, 317
               

               Conread position:
               39-384
               

               Cow position:
               chr5:64175887-64176215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 17
               

               Conread position:
               40-339
               

               Cow position:
               chr5:19797231-19796919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               46, 24
               

               Conread position:
               40-378
               

               Cow position:
               chr5:52127016-52126686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               129, 13
               

               Conread position:
               40-379
               

               Cow position:
               chr5:31216806-31217151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               20, 136
               

               Conread position:
               41-384
               

               Cow position:
               chr5:7044464-7044805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 21
               

               Conread position:
               43-224
               

               Cow position:
               chr5:46479005-46479180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               43-384
               

               Cow position:
               chr5:65967495-65967826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               241
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               223, 30
               

               Conread position:
               44-238
               

               Cow position:
               chr5:30221533-30221730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               16, 144
               

               Conread position:
               44-332
               

               Cow position:
               chr5:43408098-43408405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               44-382
               

               Cow position:
               chr5:55942136-55942492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               251
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               103, 9
               

               Conread position:
               44-394
               

               Cow position:
               chr5:5856101-5855759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               100, 20
               

               Conread position:
               45-247
               

               Cow position:
               chr5:29599311-29599508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               194, 97
               

               Conread position:
               45-347
               

               Cow position:
               chr5:60952902-60952595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               43, 19
               

               Conread position:
               45-384
               

               Cow position:
               chr5:29681333-29680982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               87, 21
               

               Conread position:
               46-176
               

               Cow position:
               chr5:20407234-20407365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               46-250
               

               Cow position:
               chr5:57497184-57497388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               14, 101
               

               Conread position:
               46-268
               

               Cow position:
               chr5:26147831-26147609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               12, 30
               

               Conread position:
               46-352
               

               Cow position:
               chr5:73166900-73167193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               142, 7
               

               Conread position:
               46-365
               

               Cow position:
               chr5:19752541-19752226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 81
               

               Conread position:
               46-373
               

               Cow position:
               chr5:3772081-3771761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               119, 11
               

               Conread position:
               46-378
               

               Cow position:
               chr5:35319321-35319663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               144, 18
               

               Conread position:
               46-396
               

               Cow position:
               chr5:57526685-57527026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               26, 133
               

               Conread position:
               47-249
               

               Cow position:
               chr5:16185620-16185415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               17, 148
               

               Conread position:
               47-378
               

               Cow position:
               chr5:29097600-29097275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               212
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               213, 17
               

               Conread position:
               48-228
               

               Cow position:
               chr5:52211453-52211629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               48-233
               

               Cow position:
               chr5:49207089-49207274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               9, 106
               

               Conread position:
               48-234
               

               Cow position:
               chr5:37253662-37253481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               13, 98
               

               Conread position:
               48-273
               

               Cow position:
               chr5:40241974-40241758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               14, 80
               

               Conread position:
               48-282
               

               Cow position:
               chr5:69383491-69383258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               18, 100
               

               Conread position:
               48-364
               

               Cow position:
               chr5:37893581-37893255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               38, 16
               

               Conread position:
               48-368
               

               Cow position:
               chr5:61999319-61999621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               115, 16
               

               Conread position:
               48-378
               

               Cow position:
               chr5:19335539-19335876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               98, 78
               

               Conread position:
               49-272
               

               Cow position:
               chr5:30562167-30561945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               12, 80
               

               Conread position:
               49-274
               

               Cow position:
               chr5:60514788-60515017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               39, 130
               

               Conread position:
               49-286
               

               Cow position:
               chr5:64060683-64060445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               210, 0
               

               Conread position:
               49-308
               

               Cow position:
               chr5:45186875-45187142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               12, 141
               

               Conread position:
               49-315
               

               Cow position:
               chr5:52108022-52108296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               95, 25
               

               Conread position:
               49-319
               

               Cow position:
               chr5:33273934-33273657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               89, 173
               

               Conread position:
               49-341
               

               Cow position:
               chr5:43922933-43923213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               17, 66
               

               Conread position:
               49-378
               

               Cow position:
               chr5:65764892-65765217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               215
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               80, 22
               

               Conread position:
               49-384
               

               Cow position:
               chr5:4221219-4220886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               45, 107
               

               Conread position:
               49-384
               

               Cow position:
               chr5:19278466-19278798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               240
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               101, 134
               

               Conread position:
               49-384
               

               Cow position:
               chr5:41713520-41713204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               147, 15
               

               Conread position:
               49-384
               

               Cow position:
               chr5:42050782-42050453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 47
               

               Conread position:
               49-384
               

               Cow position:
               chr5:44796498-44796830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               234
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               17, 68
               

               Conread position:
               49-384
               

               Cow position:
               chr5:56071095-56070758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 104
               

               Conread position:
               49-384
               

               Cow position:
               chr5:70951655-70951974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               24, 81
               

               Conread position:
               50-209
               

               Cow position:
               chr5:47335262-47335105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               33, 96
               

               Conread position:
               50-220
               

               Cow position:
               chr5:67340117-67339949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               50-220
               

               Cow position:
               chr5:75478683-75478849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               50-224
               

               Cow position:
               chr5:43611935-43611760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               97, 41
               

               Conread position:
               50-225
               

               Cow position:
               chr5:25462321-25462149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               15, 94
               

               Conread position:
               50-228
               

               Cow position:
               chr5:64843727-64843913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               50-234
               

               Cow position:
               chr5:5808335-5808148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               10, 139
               

               Conread position:
               50-238
               

               Cow position:
               chr5:46499798-46499608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               107, 137
               

               Conread position:
               50-244
               

               Cow position:
               chr5:2355753-2355562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               96, 14
               

               Conread position:
               50-247
               

               Cow position:
               chr5:29829651-29829850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               98, 139
               

               Conread position:
               50-249
               

               Cow position:
               chr5:64492512-64492311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               104, 139
               

               Conread position:
               50-255
               

               Cow position:
               chr5:8736041-8736248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               112, 165
               

               Conread position:
               50-262
               

               Cow position:
               chr5:51289363-51289567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               8, 73
               

               Conread position:
               50-268
               

               Cow position:
               chr5:26167655-26167439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               50-271
               

               Cow position:
               chr5:44196694-44196915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               114, 93
               

               Conread position:
               50-282
               

               Cow position:
               chr5:12300147-12299914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               22, 63
               

               Conread position:
               50-290
               

               Cow position:
               chr5:12654673-12654916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               128, 95
               

               Conread position:
               50-305
               

               Cow position:
               chr5:52138174-52137918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               86, 66
               

               Conread position:
               50-321
               

               Cow position:
               chr5:57101291-57101561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               214, 15
               

               Conread position:
               50-326
               

               Cow position:
               chr5:68537428-68537707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               79, 175
               

               Conread position:
               50-340
               

               Cow position:
               chr5:14344860-14345149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               96, 126
               

               Conread position:
               50-343
               

               Cow position:
               chr5:4120264-4119973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               52, 127
               

               Conread position:
               50-343
               

               Cow position:
               chr5:59081956-59082252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               104, 241
               

               Conread position:
               50-363
               

               Cow position:
               chr5:57755799-57756108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               129, 7
               

               Conread position:
               50-378
               

               Cow position:
               chr5:11667948-11668277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               229
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               78, 237
               

               Conread position:
               50-379
               

               Cow position:
               chr5:42845361-42845691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               115, 45
               

               Conread position:
               50-383
               

               Cow position:
               chr5:36038769-36039101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 58
               

               Conread position:
               50-383
               

               Cow position:
               chr5:50723283-50722951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               93, 7
               

               Conread position:
               50-384
               

               Cow position:
               chr5:12322575-12322899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 78
               

               Conread position:
               50-384
               

               Cow position:
               chr5:21829102-21828768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 43
               

               Conread position:
               50-384
               

               Cow position:
               chr5:25035018-25035341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 108
               

               Conread position:
               50-384
               

               Cow position:
               chr5:32338725-32339062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               76, 26
               

               Conread position:
               50-384
               

               Cow position:
               chr5:33560502-33560832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               233
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               107, 77
               

               Conread position:
               50-384
               

               Cow position:
               chr5:35208500-35208168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               231
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               14, 128
               

               Conread position:
               50-384
               

               Cow position:
               chr5:35969776-35969444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               242
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               85, 203
               

               Conread position:
               50-384
               

               Cow position:
               chr5:42670637-42670954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               190, 64
               

               Conread position:
               50-384
               

               Cow position:
               chr5:43858182-43858530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               76, 168
               

               Conread position:
               50-384
               

               Cow position:
               chr5:47316739-47317069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               80, 41
               

               Conread position:
               50-384
               

               Cow position:
               chr5:50858171-50857839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               82, 14
               

               Conread position:
               50-384
               

               Cow position:
               chr5:52668274-52667932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               108, 14
               

               Conread position:
               50-384
               

               Cow position:
               chr5:56014958-56014636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               212, 77
               

               Conread position:
               50-384
               

               Cow position:
               chr5:57934884-57935207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 76
               

               Conread position:
               50-384
               

               Cow position:
               chr5:60016400-60016069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 101
               

               Conread position:
               50-384
               

               Cow position:
               chr5:64139797-64139468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               242
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               50-384
               

               Cow position:
               chr5:72895924-72895590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 130
               

               Conread position:
               50-384
               

               Cow position:
               chr5:72903004-72903330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               227
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               115, 77
               

               Conread position:
               50-386
               

               Cow position:
               chr5:46681487-46681815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               99, 33
               

               Conread position:
               50-388
               

               Cow position:
               chr5:61914807-61914470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               106, 146
               

               Conread position:
               51-176
               

               Cow position:
               chr5:8149073-8149196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               99
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               8, 95
               

               Conread position:
               51-258
               

               Cow position:
               chr5:1693856-1694060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               10, 89
               

               Conread position:
               51-270
               

               Cow position:
               chr5:56860679-56860462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               15, 109
               

               Conread position:
               51-384
               

               Cow position:
               chr5:3582791-3582476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               240
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               9, 95
               

               Conread position:
               51-384
               

               Cow position:
               chr5:34562243-34561914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               193, 6
               

               Conread position:
               51-384
               

               Cow position:
               chr5:65941016-65941348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 6
               

               Conread position:
               52-234
               

               Cow position:
               chr5:34918577-34918398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               85, 95
               

               Conread position:
               52-238
               

               Cow position:
               chr5:40531297-40531490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               17, 183
               

               Conread position:
               52-273
               

               Cow position:
               chr5:65760300-65760518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               94, 121
               

               Conread position:
               52-275
               

               Cow position:
               chr5:7177386-7177161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               52-292
               

               Cow position:
               chr5:61049568-61049325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               92, 125
               

               Conread position:
               52-295
               

               Cow position:
               chr5:39036016-39035772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               75, 127
               

               Conread position:
               52-378
               

               Cow position:
               chr5:71015651-71015972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               82, 101
               

               Conread position:
               52-379
               

               Cow position:
               chr5:34976607-34976937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               97, 19
               

               Conread position:
               52-383
               

               Cow position:
               chr5:11427001-11427334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               12, 40
               

               Conread position:
               52-384
               

               Cow position:
               chr5:14920692-14921028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 275
               

               Conread position:
               52-384
               

               Cow position:
               chr5:24995988-24996321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 13
               

               Conread position:
               52-384
               

               Cow position:
               chr5:35459062-35459392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               219
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               157, 81
               

               Conread position:
               52-384
               

               Cow position:
               chr5:44028077-44028399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 21
               

               Conread position:
               52-384
               

               Cow position:
               chr5:47602042-47601721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               53-216
               

               Cow position:
               chr5:47960032-47960191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               53-218
               

               Cow position:
               chr5:4824386-4824216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               53-219
               

               Cow position:
               chr5:9559647-9559488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               13, 80
               

               Conread position:
               53-234
               

               Cow position:
               chr5:58401797-58401621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               53-239
               

               Cow position:
               chr5:61201994-61201806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               96, 134
               

               Conread position:
               53-244
               

               Cow position:
               chr5:6876732-6876926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               90, 165
               

               Conread position:
               53-247
               

               Cow position:
               chr5:24915292-24915488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               53-249
               

               Cow position:
               chr5:7675924-7676118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               12, 93
               

               Conread position:
               53-267
               

               Cow position:
               chr5:54312832-54312619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               211, 19
               

               Conread position:
               53-273
               

               Cow position:
               chr5:52136819-52137042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               93, 123
               

               Conread position:
               53-289
               

               Cow position:
               chr5:22795439-22795213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               133, 41
               

               Conread position:
               53-297
               

               Cow position:
               chr5:35989997-35989747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               7, 135
               

               Conread position:
               53-328
               

               Cow position:
               chr5:50101146-50101420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               111, 11
               

               Conread position:
               53-344
               

               Cow position:
               chr5:63241211-63240918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               74, 11
               

               Conread position:
               53-352
               

               Cow position:
               chr5:4280677-4280382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               196, 88
               

               Conread position:
               53-352
               

               Cow position:
               chr5:20288024-20288329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 236
               

               Conread position:
               53-352
               

               Cow position:
               chr5:26132863-26133153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               101, 11
               

               Conread position:
               53-364
               

               Cow position:
               chr5:49668716-49668400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               91, 42
               

               Conread position:
               53-371
               

               Cow position:
               chr5:32394835-32394516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               100, 135
               

               Conread position:
               53-376
               

               Cow position:
               chr5:45472509-45472184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               8, 34
               

               Conread position:
               53-379
               

               Cow position:
               chr5:17999264-17999585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               91, 11
               

               Conread position:
               53-382
               

               Cow position:
               chr5:66339308-66338983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               11, 76
               

               Conread position:
               53-384
               

               Cow position:
               chr5:58697-59027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               228
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               94, 125
               

               Conread position:
               53-384
               

               Cow position:
               chr5:12557052-12557390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 241
               

               Conread position:
               53-384
               

               Cow position:
               chr5:16025250-16025555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               213, 73
               

               Conread position:
               53-384
               

               Cow position:
               chr5:18289351-18289031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               252, 88
               

               Conread position:
               53-384
               

               Cow position:
               chr5:21525393-21525070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               224
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               99, 33
               

               Conread position:
               53-384
               

               Cow position:
               chr5:25495118-25495449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               239
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               85, 36
               

               Conread position:
               53-384
               

               Cow position:
               chr5:26467860-26467525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 33
               

               Conread position:
               53-384
               

               Cow position:
               chr5:32153079-32153413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               85, 12
               

               Conread position:
               53-384
               

               Cow position:
               chr5:61576779-61576443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               101, 25
               

               Conread position:
               53-384
               

               Cow position:
               chr5:64321994-64321655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 72
               

               Conread position:
               53-385
               

               Cow position:
               chr5:5257054-5257392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               69, 102
               

               Conread position:
               54-209
               

               Cow position:
               chr5:34639356-34639199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               54-213
               

               Cow position:
               chr5:64061245-64061092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               54-219
               

               Cow position:
               chr5:63300310-63300145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               92, 85
               

               Conread position:
               54-238
               

               Cow position:
               chr5:41226772-41226958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               96, 128
               

               Conread position:
               54-257
               

               Cow position:
               chr5:6086109-6086314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               54-332
               

               Cow position:
               chr5:15364102-15363834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               215, 72
               

               Conread position:
               54-345
               

               Cow position:
               chr5:33032400-33032114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               66, 40
               

               Conread position:
               54-378
               

               Cow position:
               chr5:57101565-57101866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               142, 38
               

               Conread position:
               54-378
               

               Cow position:
               chr5:71845694-71846012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               203, 34
               

               Conread position:
               54-383
               

               Cow position:
               chr5:21617687-21617361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 93
               

               Conread position:
               54-384
               

               Cow position:
               chr5:24349347-24349009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               231
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               62, 146
               

               Conread position:
               54-384
               

               Cow position:
               chr5:49920157-49919824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               95, 19
               

               Conread position:
               54-384
               

               Cow position:
               chr5:55068932-55068612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               212, 44
               

               Conread position:
               54-384
               

               Cow position:
               chr5:55177114-55176792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               13, 50
               

               Conread position:
               54-384
               

               Cow position:
               chr5:55956142-55955811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 105
               

               Conread position:
               54-384
               

               Cow position:
               chr5:62107253-62107589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               102, 11
               

               Conread position:
               54-385
               

               Cow position:
               chr5:56877703-56877388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               15, 69
               

               Conread position:
               55-246
               

               Cow position:
               chr5:21339029-21339229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               55-344
               

               Cow position:
               chr5:70271098-70270801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               203
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               85, 91
               

               Conread position:
               55-352
               

               Cow position:
               chr5:30805388-30805102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               45, 24
               

               Conread position:
               56-235
               

               Cow position:
               chr5:60207935-60207759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               56-249
               

               Cow position:
               chr5:12562530-12562723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               153, 86
               

               Conread position:
               56-274
               

               Cow position:
               chr5:51298485-51298701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               208, 84
               

               Conread position:
               56-348
               

               Cow position:
               chr5:41935425-41935719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               212
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               88, 121
               

               Conread position:
               56-365
               

               Cow position:
               chr5:18574412-18574095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               64, 165
               

               Conread position:
               56-378
               

               Cow position:
               chr5:43391255-43390940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               157, 14
               

               Conread position:
               56-384
               

               Cow position:
               chr5:991704-991368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 252
               

               Conread position:
               56-384
               

               Cow position:
               chr5:52164943-52165277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 136
               

               Conread position:
               56-384
               

               Cow position:
               chr5:74643454-74643769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 86
               

               Conread position:
               57-203
               

               Cow position:
               chr5:48104489-48104344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               123, 88
               

               Conread position:
               57-216
               

               Cow position:
               chr5:12504565-12504720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               57-217
               

               Cow position:
               chr5:69765805-69765965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               57-220
               

               Cow position:
               chr5:6245436-6245597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               57-220
               

               Cow position:
               chr5:52849310-52849151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               57-225
               

               Cow position:
               chr5:34787801-34787635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               57-255
               

               Cow position:
               chr5:3677957-3677754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               70, 169
               

               Conread position:
               57-262
               

               Cow position:
               chr5:75760039-75760250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               85, 172
               

               Conread position:
               57-270
               

               Cow position:
               chr5:65552492-65552696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               111, 37
               

               Conread position:
               57-272
               

               Cow position:
               chr5:75227984-75228186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               207, 65
               

               Conread position:
               57-299
               

               Cow position:
               chr5:74039777-74040017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               228, 60
               

               Conread position:
               57-327
               

               Cow position:
               chr5:49341806-49342090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               72, 242
               

               Conread position:
               57-344
               

               Cow position:
               chr5:61456076-61455787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               30, 103
               

               Conread position:
               57-378
               

               Cow position:
               chr5:7057168-7057492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               102, 133
               

               Conread position:
               57-378
               

               Cow position:
               chr5:47757001-47756684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               96, 131
               

               Conread position:
               57-380
               

               Cow position:
               chr5:17086788-17087119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 159
               

               Conread position:
               57-384
               

               Cow position:
               chr5:22242545-22242872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 58
               

               Conread position:
               57-384
               

               Cow position:
               chr5:29828277-29827951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               233
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               97, 128
               

               Conread position:
               57-384
               

               Cow position:
               chr5:29895400-29895100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               229
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               196, 0
               

               Conread position:
               57-384
               

               Cow position:
               chr5:45225593-45225923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               135, 19
               

               Conread position:
               57-384
               

               Cow position:
               chr5:45845461-45845790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 88
               

               Conread position:
               57-384
               

               Cow position:
               chr5:52905268-52905592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               92, 103
               

               Conread position:
               57-384
               

               Cow position:
               chr5:62172627-62172318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 38
               

               Conread position:
               58-220
               

               Cow position:
               chr5:5030667-5030509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               96, 56
               

               Conread position:
               58-235
               

               Cow position:
               chr5:36634936-36634757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               98, 131
               

               Conread position:
               58-244
               

               Cow position:
               chr5:46421826-46421628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               58-248
               

               Cow position:
               chr5:35394211-35394395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               58-274
               

               Cow position:
               chr5:59627320-59627111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               206, 33
               

               Conread position:
               58-344
               

               Cow position:
               chr5:66366738-66366449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               19, 94
               

               Conread position:
               58-348
               

               Cow position:
               chr5:11769500-11769206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               71, 97
               

               Conread position:
               58-352
               

               Cow position:
               chr5:6438798-6439099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               226
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               178, 12
               

               Conread position:
               58-375
               

               Cow position:
               chr5:52831706-52831379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               48, 90
               

               Conread position:
               58-383
               

               Cow position:
               chr5:53835949-53835617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 152
               

               Conread position:
               58-384
               

               Cow position:
               chr5:41165310-41164988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 82
               

               Conread position:
               58-384
               

               Cow position:
               chr5:56524390-56524077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               135, 69
               

               Conread position:
               59-200
               

               Cow position:
               chr5:74050051-74049910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               59-212
               

               Cow position:
               chr5:58487600-58487449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               105, 68
               

               Conread position:
               59-230
               

               Cow position:
               chr5:21721249-21721414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               59-247
               

               Cow position:
               chr5:43465754-43465564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               88, 128
               

               Conread position:
               59-251
               

               Cow position:
               chr5:3817460-3817652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               59-259
               

               Cow position:
               chr5:19079470-19079279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               59-262
               

               Cow position:
               chr5:35190333-35190134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               158
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               59-274
               

               Cow position:
               chr5:17828250-17828468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               93, 135
               

               Conread position:
               59-274
               

               Cow position:
               chr5:36143205-36142998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               133, 34
               

               Conread position:
               59-274
               

               Cow position:
               chr5:60948359-60948144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               205, 163
               

               Conread position:
               59-296
               

               Cow position:
               chr5:56059837-56060081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               45, 133
               

               Conread position:
               59-300
               

               Cow position:
               chr5:39815273-39815504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               85, 33
               

               Conread position:
               59-332
               

               Cow position:
               chr5:45405274-45404995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               20, 129
               

               Conread position:
               59-345
               

               Cow position:
               chr5:63627313-63627584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               205, 21
               

               Conread position:
               59-347
               

               Cow position:
               chr5:34625175-34624896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               206
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               168, 83
               

               Conread position:
               59-348
               

               Cow position:
               chr5:43604366-43604081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               87, 117
               

               Conread position:
               59-355
               

               Cow position:
               chr5:44921159-44921466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               102, 251
               

               Conread position:
               59-357
               

               Cow position:
               chr5:1247490-1247193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               85, 35
               

               Conread position:
               59-379
               

               Cow position:
               chr5:64140765-64140440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               174, 228
               

               Conread position:
               59-383
               

               Cow position:
               chr5:6838852-6839172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               85, 21
               

               Conread position:
               59-384
               

               Cow position:
               chr5:12902146-12901817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               236
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               87, 128
               

               Conread position:
               59-384
               

               Cow position:
               chr5:19778339-19778678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               76, 140
               

               Conread position:
               59-384
               

               Cow position:
               chr5:30303108-30302795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 84
               

               Conread position:
               59-384
               

               Cow position:
               chr5:30628926-30629256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 113
               

               Conread position:
               59-384
               

               Cow position:
               chr5:39333302-39333637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               61, 93
               

               Conread position:
               59-384
               

               Cow position:
               chr5:66582197-66581865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               239
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               68, 227
               

               Conread position:
               59-387
               

               Cow position:
               chr5:50575995-50575683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               205, 15
               

               Conread position:
               60-231
               

               Cow position:
               chr5:30492565-30492739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               92, 128
               

               Conread position:
               60-247
               

               Cow position:
               chr5:41736408-41736221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               96, 34
               

               Conread position:
               60-249
               

               Cow position:
               chr5:74887673-74887863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               60-252
               

               Cow position:
               chr5:62996185-62995991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               86, 127
               

               Conread position:
               60-255
               

               Cow position:
               chr5:15991419-15991608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               60-255
               

               Cow position:
               chr5:57399025-57399221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               84, 129
               

               Conread position:
               60-260
               

               Cow position:
               chr5:29172217-29172013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               28, 135
               

               Conread position:
               60-260
               

               Cow position:
               chr5:34288028-34288224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               159
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               60-262
               

               Cow position:
               chr5:59335999-59335793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               94, 124
               

               Conread position:
               60-320
               

               Cow position:
               chr5:62812053-62811789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               89, 128
               

               Conread position:
               60-332
               

               Cow position:
               chr5:63192528-63192788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               204, 85
               

               Conread position:
               60-355
               

               Cow position:
               chr5:37090411-37090708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               89, 118
               

               Conread position:
               60-369
               

               Cow position:
               chr5:43403135-43402817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 113
               

               Conread position:
               60-377
               

               Cow position:
               chr5:63647251-63647565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               89, 127
               

               Conread position:
               60-378
               

               Cow position:
               chr5:31475910-31475592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               87, 127
               

               Conread position:
               60-383
               

               Cow position:
               chr5:12434761-12434438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               204, 68
               

               Conread position:
               60-383
               

               Cow position:
               chr5:33834266-33833948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               226
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               103, 125
               

               Conread position:
               60-383
               

               Cow position:
               chr5:39937342-39937010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               117, 19
               

               Conread position:
               60-383
               

               Cow position:
               chr5:42064433-42064106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               60-384
               

               Cow position:
               chr5:37941581-37941888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               77, 87
               

               Conread position:
               60-384
               

               Cow position:
               chr5:41009784-41010091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               79, 108
               

               Conread position:
               60-384
               

               Cow position:
               chr5:44446649-44446966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 67
               

               Conread position:
               60-384
               

               Cow position:
               chr5:49474328-49474643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 87
               

               Conread position:
               60-384
               

               Cow position:
               chr5:54048124-54048449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               89, 118
               

               Conread position:
               60-384
               

               Cow position:
               chr5:56028319-56028625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 80
               

               Conread position:
               60-384
               

               Cow position:
               chr5:56548792-56548480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               206, 80
               

               Conread position:
               60-394
               

               Cow position:
               chr5:28302530-28302856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               186, 32
               

               Conread position:
               61-224
               

               Cow position:
               chr5:57447439-57447604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               85, 126
               

               Conread position:
               61-238
               

               Cow position:
               chr5:56525485-56525664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               86, 126
               

               Conread position:
               61-246
               

               Cow position:
               chr5:70591767-70591594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               61-262
               

               Cow position:
               chr5:37842054-37842255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               72, 84
               

               Conread position:
               61-299
               

               Cow position:
               chr5:73253630-73253398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               206, 84
               

               Conread position:
               61-329
               

               Cow position:
               chr5:69099944-69099675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 92
               

               Conread position:
               61-348
               

               Cow position:
               chr5:7012624-7012910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               76, 93
               

               Conread position:
               61-348
               

               Cow position:
               chr5:30247300-30247586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               203, 110
               

               Conread position:
               61-378
               

               Cow position:
               chr5:59384461-59384782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               56, 47
               

               Conread position:
               61-384
               

               Cow position:
               chr5:16893553-16893870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 60
               

               Conread position:
               61-384
               

               Cow position:
               chr5:35763469-35763177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               204, 25
               

               Conread position:
               61-384
               

               Cow position:
               chr5:38833339-38833025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 30
               

               Conread position:
               61-386
               

               Cow position:
               chr5:55756188-55756525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               88, 116
               

               Conread position:
               61-389
               

               Cow position:
               chr5:30233135-30232796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 99
               

               Conread position:
               61-397
               

               Cow position:
               chr5:11229446-11229778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 47
               

               Conread position:
               62-274
               

               Cow position:
               chr5:53935330-53935536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               109, 64
               

               Conread position:
               62-378
               

               Cow position:
               chr5:12760896-12761204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               87, 120
               

               Conread position:
               62-384
               

               Cow position:
               chr5:14314740-14314427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               201, 60
               

               Conread position:
               62-384
               

               Cow position:
               chr5:17767931-17768242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               168, 9
               

               Conread position:
               62-384
               

               Cow position:
               chr5:27155226-27154925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               39, 61
               

               Conread position:
               62-384
               

               Cow position:
               chr5:30253964-30253643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 66
               

               Conread position:
               62-384
               

               Cow position:
               chr5:30276911-30276599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 81
               

               Conread position:
               62-384
               

               Cow position:
               chr5:40109708-40109401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 65
               

               Conread position:
               63-213
               

               Cow position:
               chr5:19626799-19626651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               63-343
               

               Cow position:
               chr5:55259631-55259363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               153, 93
               

               Conread position:
               63-384
               

               Cow position:
               chr5:11539829-11540146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               83, 122
               

               Conread position:
               64-225
               

               Cow position:
               chr5:66287163-66287006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               64-255
               

               Cow position:
               chr5:29256486-29256676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               85, 117
               

               Conread position:
               64-262
               

               Cow position:
               chr5:44722291-44722488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               64-283
               

               Cow position:
               chr5:60523949-60523735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               78, 63
               

               Conread position:
               64-355
               

               Cow position:
               chr5:12247520-12247816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               202
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               107, 22
               

               Conread position:
               64-384
               

               Cow position:
               chr5:16214903-16214587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               212
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               200, 87
               

               Conread position:
               65-232
               

               Cow position:
               chr5:74065299-74065463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               65-257
               

               Cow position:
               chr5:44734506-44734696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               65-291
               

               Cow position:
               chr5:72045456-72045680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               78, 21
               

               Conread position:
               65-384
               

               Cow position:
               chr5:22667291-22666995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               235
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               230, 86
               

               Conread position:
               65-384
               

               Cow position:
               chr5:65776156-65776480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               58, 48
               

               Conread position:
               68-320
               

               Cow position:
               chr5:66466531-66466284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               161, 25
               

               Conread position:
               68-336
               

               Cow position:
               chr5:49501600-49501875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               78, 223
               

               Conread position:
               68-367
               

               Cow position:
               chr5:66551674-66551980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               221
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               54, 90
               

               Conread position:
               68-384
               

               Cow position:
               chr5:12351594-12351886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 79
               

               Conread position:
               68-384
               

               Cow position:
               chr5:47696242-47696540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               196, 58
               

               Conread position:
               68-384
               

               Cow position:
               chr5:50600264-50599958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 78
               

               Conread position:
               68-384
               

               Cow position:
               chr5:67932248-67932562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               76, 192
               

               Conread position:
               68-397
               

               Cow position:
               chr5:65136475-65136165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               197, 18
               

               Conread position:
               69-332
               

               Cow position:
               chr5:61784508-61784774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               75, 114
               

               Conread position:
               69-372
               

               Cow position:
               chr5:61771339-61771028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               68, 119
               

               Conread position:
               69-377
               

               Cow position:
               chr5:34050325-34050025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               190, 75
               

               Conread position:
               69-384
               

               Cow position:
               chr5:53947116-53946797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               77, 109
               

               Conread position:
               70-355
               

               Cow position:
               chr5:72006281-72006561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               211
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               196, 24
               

               Conread position:
               72-220
               

               Cow position:
               chr5:4981659-4981516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               72-240
               

               Cow position:
               chr5:65745554-65745719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               80, 0
               

               Conread position:
               72-257
               

               Cow position:
               chr5:16668907-16668726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               72-318
               

               Cow position:
               chr5:48867256-48867493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               187, 72
               

               Conread position:
               72-348
               

               Cow position:
               chr5:34108843-34109121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               116, 136
               

               Conread position:
               72-352
               

               Cow position:
               chr5:35123307-35123580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               92, 49
               

               Conread position:
               72-378
               

               Cow position:
               chr5:63234609-63234921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               60, 173
               

               Conread position:
               72-383
               

               Cow position:
               chr5:45397779-45397481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 22
               

               Conread position:
               72-383
               

               Cow position:
               chr5:57328011-57327699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               92, 66
               

               Conread position:
               72-383
               

               Cow position:
               chr5:68605077-68604761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               65, 122
               

               Conread position:
               72-384
               

               Cow position:
               chr5:17062865-17063188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               74, 123
               

               Conread position:
               72-384
               

               Cow position:
               chr5:68719081-68718776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               229
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               83, 36
               

               Conread position:
               72-395
               

               Cow position:
               chr5:17554821-17555137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 68
               

               Conread position:
               73-272
               

               Cow position:
               chr5:3743539-3743335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               73-289
               

               Cow position:
               chr5:5017584-5017370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               123, 20
               

               Conread position:
               73-384
               

               Cow position:
               chr5:33414195-33414510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               216
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               96, 87
               

               Conread position:
               74-244
               

               Cow position:
               chr5:60741457-60741286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               80, 101
               

               Conread position:
               74-255
               

               Cow position:
               chr5:20812761-20812577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               64, 110
               

               Conread position:
               74-258
               

               Cow position:
               chr5:6695761-6695577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               72, 105
               

               Conread position:
               74-265
               

               Cow position:
               chr5:38040356-38040543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               92, 65
               

               Conread position:
               74-368
               

               Cow position:
               chr5:26097502-26097214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               200
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               75, 111
               

               Conread position:
               74-384
               

               Cow position:
               chr5:12673268-12673560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               188, 82
               

               Conread position:
               74-384
               

               Cow position:
               chr5:20779187-20779484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               190, 77
               

               Conread position:
               74-384
               

               Cow position:
               chr5:29352920-29353226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               190, 49
               

               Conread position:
               74-384
               

               Cow position:
               chr5:37646287-37645976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               151, 50
               

               Conread position:
               76-384
               

               Cow position:
               chr5:15721878-15722164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               188, 18
               

               Conread position:
               76-384
               

               Cow position:
               chr5:44053836-44054133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               39, 87
               

               Conread position:
               76-384
               

               Cow position:
               chr5:64523654-64523965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               73, 80
               

               Conread position:
               79-274
               

               Cow position:
               chr5:16939385-16939583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               70, 111
               

               Conread position:
               79-378
               

               Cow position:
               chr5:64137465-64137162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               83, 97
               

               Conread position:
               79-384
               

               Cow position:
               chr5:35826805-35826505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 65
               

               Conread position:
               79-384
               

               Cow position:
               chr5:64168030-64168338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               75, 145
               

               Conread position:
               79-384
               

               Cow position:
               chr5:64697995-64697685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               65, 148
               

               Conread position:
               80-273
               

               Cow position:
               chr5:46704094-46704287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               184, 67
               

               Conread position:
               80-384
               

               Cow position:
               chr5:6503670-6503978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               43, 109
               

               Conread position:
               80-384
               

               Cow position:
               chr5:57419590-57419890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               91, 66
               

               Conread position:
               81-378
               

               Cow position:
               chr5:50482653-50482956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               68, 108
               

               Conread position:
               81-384
               

               Cow position:
               chr5:74580992-74580698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               219, 71
               

               Conread position:
               82-365
               

               Cow position:
               chr5:69636414-69636156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               6, 37
               

               Conread position:
               83-330
               

               Cow position:
               chr5:38068467-38068710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               63, 108
               

               Conread position:
               83-384
               

               Cow position:
               chr5:48829358-48829060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               64, 92
               

               Conread position:
               86-376
               

               Cow position:
               chr5:47703925-47704217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               92, 58
               

               Conread position:
               87-282
               

               Cow position:
               chr5:21223509-21223327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               24, 36
               

               Conread position:
               87-329
               

               Cow position:
               chr5:55795771-55796008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               134, 56
               

               Conread position:
               87-376
               

               Cow position:
               chr5:54350172-54350453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               84, 35
               

               Conread position:
               88-321
               

               Cow position:
               chr5:57686543-57686776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               176, 53
               

               Conread position:
               90-287
               

               Cow position:
               chr5:38169089-38168892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               158
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               87, 57
               

               Conread position:
               91-346
               

               Cow position:
               chr5:61007262-61007006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               35, 40
               

               Conread position:
               95-233
               

               Cow position:
               chr5:52192242-52192376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               95-384
               

               Cow position:
               chr5:55232628-55232893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               72, 32
               

               Conread position:
               96-327
               

               Cow position:
               chr5:17602015-17602242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               177
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               186, 139
               

               Conread position:
               97-378
               

               Cow position:
               chr5:71495011-71494728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               30, 237
               

               Conread position:
               98-383
               

               Cow position:
               chr5:60747091-60747375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               23, 91
               

               Conread position:
               99-288
               

               Cow position:
               chr5:17604949-17605137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               73, 42
               

               Conread position:
               100-344
               

               Cow position:
               chr5:7193599-7193362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               162, 45
               

               Conread position:
               106-382
               

               Cow position:
               chr5:7755383-7755658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               23, 79
               

               Conread position:
               114-261
               

               Cow position:
               chr5:51490429-51490577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               117-332
               

               Cow position:
               chr5:67118587-67118372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               76, 35
               

               Conread position:
               125-384
               

               Cow position:
               chr5:43457372-43457614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               82, 21
               

               Conread position:
               127-378
               

               Cow position:
               chr5:14473244-14473505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               128-282
               

               Cow position:
               chr5:24069545-24069393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               136, 31
               

               Conread position:
               128-296
               

               Cow position:
               chr5:9233832-9234000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               42, 18
               

               Conread position:
               128-325
               

               Cow position:
               chr5:61102874-61102675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               112, 124
               

               Conread position:
               128-327
               

               Cow position:
               chr5:27306464-27306262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               10, 132
               

               Conread position:
               128-332
               

               Cow position:
               chr5:58555295-58555094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               136, 149
               

               Conread position:
               128-368
               

               Cow position:
               chr5:59872924-59873173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               58, 18
               

               Conread position:
               128-376
               

               Cow position:
               chr5:63987289-63987535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               136, 23
               

               Conread position:
               128-377
               

               Cow position:
               chr5:54767753-54768000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               128-383
               

               Cow position:
               chr5:50533230-50533484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               101, 87
               

               Conread position:
               128-384
               

               Cow position:
               chr5:4031830-4032092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               86, 24
               

               Conread position:
               128-384
               

               Cow position:
               chr5:34301072-34300818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               71, 18
               

               Conread position:
               128-385
               

               Cow position:
               chr5:4709994-4710245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               136, 99
               

               Conread position:
               128-385
               

               Cow position:
               chr5:64591939-64592194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               136, 24
               

               Conread position:
               128-386
               

               Cow position:
               chr5:73418131-73418383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               26, 125
               

               Conread position:
               129-343
               

               Cow position:
               chr5:40242199-40241985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               133, 22
               
UCSC Genome Browser
               Conread position:
               129-378
               

               Cow position:
               chr5:1087045-1087288 (view  custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               131, 32
               
UCSC Genome Browser
               
               
               
Conread position: 129-378

               
               
               
Cow position: chr5:21039830-21040065 (view  custom track)

               
               
               
Alignm length: 251

               
               
               
Alignm identity: 174

               
               
               
Alignm E-value: 1e-24

               
               
               
Alignm gaps (pig, cow): 137, 10
UCSC Genome Browser
               
               
               
Conread position: 129-384

               
               
               
Cow position: chr5:5110914-5111173 (view  custom track)

               
               
               
Alignm length: 263

               
               
               
Alignm identity: 197

               
               
               
Alignm E-value: 1.4013e-45

               
               
               
Alignm gaps (pig, cow): 63, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr5:16206000-16206253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr5:43992481-43992223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):135, 156

               
               
               Conread position:129-384
               
               
               Cow position:chr5:50821944-50821684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 169

               
               
               Conread position:130-383
               
               
               Cow position:chr5:34441625-34441888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:130-384
               
               
               Cow position:chr5:30949759-30950014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:130-384
               
               
               Cow position:chr5:37189941-37190194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:131-282
               
               
               Cow position:chr5:4166797-4166645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:131-313
               
               
               Cow position:chr5:57230184-57230367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-342
               
               
               Cow position:chr5:56338866-56339074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):131, 161

               
               
               Conread position:131-348
               
               
               Cow position:chr5:29912576-29912357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:131-355
               
               
               Cow position:chr5:67212513-67212287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:131-369
               
               
               Cow position:chr5:45419982-45420221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):133, 142

               
               
               Conread position:131-382
               
               
               Cow position:chr5:9089873-9090116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 48

               
               
               Conread position:131-383
               
               
               Cow position:chr5:44726178-44726423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:131-384
               
               
               Cow position:chr5:23168671-23168923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 226

               
               
               Conread position:131-384
               
               
               Cow position:chr5:44752152-44752409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:131-384
               
               
               Cow position:chr5:46509709-46509964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 235

               
               
               Conread position:131-384
               
               
               Cow position:chr5:49440721-49440970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:131-384
               
               
               Cow position:chr5:55019448-55019195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):23, 155

               
               
               Conread position:131-385
               
               
               Cow position:chr5:26476863-26477111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:131-385
               
               
               Cow position:chr5:37646389-37646647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):133, 63

               
               
               Conread position:131-385
               
               
               Cow position:chr5:43929581-43929836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):133, 114

               
               
               Conread position:131-385
               
               
               Cow position:chr5:54060431-54060176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):132, 102

               
               
               Conread position:131-385
               
               
               Cow position:chr5:61810926-61810687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:132-313
               
               
               Cow position:chr5:61875689-61875515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):171, 14

               
               
               Conread position:132-367
               
               
               Cow position:chr5:458642-458410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):132, 75

               
               
               Conread position:132-384
               
               
               Cow position:chr5:23678549-23678802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):134, 51

               
               
               Conread position:132-384
               
               
               Cow position:chr5:25230865-25231102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):160, 46

               
               
               Conread position:132-384
               
               
               Cow position:chr5:36855360-36855106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 165

               
               
               Conread position:132-384
               
               
               Cow position:chr5:41294233-41293982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:132-384
               
               
               Cow position:chr5:45574772-45574517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:132-384
               
               
               Cow position:chr5:54311490-54311234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:132-384
               
               
               Cow position:chr5:58446960-58446705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:132-384
               
               
               Cow position:chr5:62378934-62378693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):132, 87

               
               
               Conread position:133-265
               
               
               Cow position:chr5:55850033-55849906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:133-299
               
               
               Cow position:chr5:9170433-9170593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:133-348
               
               
               Cow position:chr5:41545740-41545956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):131, 148

               
               
               Conread position:133-378
               
               
               Cow position:chr5:19524051-19523808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:133-378
               
               
               Cow position:chr5:50215413-50215647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:133-378
               
               
               Cow position:chr5:53710538-53710782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:133-381
               
               
               Cow position:chr5:63426852-63427103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 7

               
               
               Conread position:133-384
               
               
               Cow position:chr5:7698151-7697907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:133-384
               
               
               Cow position:chr5:35126206-35125955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):133, 19

               
               
               Conread position:134-274
               
               
               Cow position:chr5:35647495-35647354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:134-378
               
               
               Cow position:chr5:49685127-49685362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:134-384
               
               
               Cow position:chr5:26990540-26990294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):150, 52

               
               
               Conread position:134-384
               
               
               Cow position:chr5:39258656-39258423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:134-384
               
               
               Cow position:chr5:45273350-45273599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 34

               
               
               Conread position:134-384
               
               
               Cow position:chr5:57575925-57575671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:134-384
               
               
               Cow position:chr5:63865958-63865697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:134-442
               
               
               Cow position:chr5:54375352-54375658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:135-268
               
               
               Cow position:chr5:5847697-5847827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:135-348
               
               
               Cow position:chr5:63150019-63150229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):129, 12

               
               
               Conread position:135-378
               
               
               Cow position:chr5:54086687-54086451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:137-378
               
               
               Cow position:chr5:13717424-13717659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 15

               
               
               Conread position:137-378
               
               
               Cow position:chr5:56680405-56680158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 153

               
               
               Conread position:141-326
               
               
               Cow position:chr5:35982592-35982781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 146

               
               
               Conread position:142-384
               
               
               Cow position:chr5:58793461-58793712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:146-368
               
               
               Cow position:chr5:47323602-47323383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):118, 104

               
               
               Conread position:146-377
               
               
               Cow position:chr5:37808523-37808760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):118, 184

               
               
               Conread position:146-378
               
               
               Cow position:chr5:65886871-65887098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 21

               
               
               Conread position:146-384
               
               
               Cow position:chr5:6683227-6683453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):117, 86

               
               
               Conread position:146-384
               
               
               Cow position:chr5:44993909-44994136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:146-389
               
               
               Cow position:chr5:69731640-69731404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):151, 75

               
               
               Conread position:147-331
               
               
               Cow position:chr5:56153755-56153569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:147-334
               
               
               Cow position:chr5:56517243-56517054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):98, 76

               
               
               Conread position:147-343
               
               
               Cow position:chr5:22643093-22643282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:147-368
               
               
               Cow position:chr5:27411262-27411476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:147-377
               
               
               Cow position:chr5:28945921-28946154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:147-380
               
               
               Cow position:chr5:72564903-72564666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:147-384
               
               
               Cow position:chr5:14629666-14629911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:147-384
               
               
               Cow position:chr5:17028234-17027999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:147-384
               
               
               Cow position:chr5:74016079-74015842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):119, 93

               
               
               Conread position:148-383
               
               
               Cow position:chr5:20422055-20422281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:148-384
               
               
               Cow position:chr5:6045434-6045193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):88, 139

               
               
               Conread position:149-384
               
               
               Cow position:chr5:52000355-52000124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:150-349
               
               
               Cow position:chr5:26150286-26150484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 11

               
               
               Conread position:151-385
               
               
               Cow position:chr5:27171858-27172080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:152-348
               
               
               Cow position:chr5:1461223-1461025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):112, 134

               
               
               Conread position:152-378
               
               
               Cow position:chr5:56467823-56467608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:152-383
               
               
               Cow position:chr5:6286299-6286521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 133

               
               
               Conread position:152-383
               
               
               Cow position:chr5:29903389-29903619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):112, 133

               
               
               Conread position:152-388
               
               
               Cow position:chr5:45804194-45803961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:152-388
               
               
               Cow position:chr5:63992038-63992265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 136

               
               
               Conread position:153-384
               
               
               Cow position:chr5:20783755-20783526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:153-384
               
               
               Cow position:chr5:37814759-37814525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):162, 216

               
               
               Conread position:153-384
               
               
               Cow position:chr5:72951977-72951743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 200

               
               
               Conread position:154-328
               
               
               Cow position:chr5:40237343-40237171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):127, 113

               
               
               Conread position:154-384
               
               
               Cow position:chr5:15426670-15426431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:155-368
               
               
               Cow position:chr5:23529152-23529362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:155-384
               
               
               Cow position:chr5:62142807-62142572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):109, 198

               
               
               Conread position:155-384
               
               
               Cow position:chr5:64758636-64758870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:156-384
               
               
               Cow position:chr5:15598108-15598331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:156-384
               
               
               Cow position:chr5:39875254-39875025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):108, 159

               
               
               Conread position:156-397
               
               
               Cow position:chr5:28927464-28927698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:160-366
               
               
               Cow position:chr5:57639849-57640049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:161-279
               
               
               Cow position:chr5:12169644-12169762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):102, 92

               
               
               Conread position:161-383
               
               
               Cow position:chr5:48009734-48009946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):160, 96

               
               
               Conread position:161-384
               
               
               Cow position:chr5:57737224-57737012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 116

               
               
               Conread position:161-384
               
               
               Cow position:chr5:58856227-58856005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):144, 54

               
               
               Conread position:162-384
               
               
               Cow position:chr5:42744904-42744690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:164-383
               
               
               Cow position:chr5:65588821-65588606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):100, 87

               
               
               Conread position:167-330
               
               
               Cow position:chr5:20407559-20407725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):97, 121

               
               
               Conread position:168-384
               
               
               Cow position:chr5:32696705-32696919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:169-366
               
               
               Cow position:chr5:31640542-31640340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr5:52644965-52645177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:174-352
               
               
               Cow position:chr5:55929056-55928875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:174-380
               
               
               Cow position:chr5:62639016-62638813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:174-384
               
               
               Cow position:chr5:56636007-56635802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):90, 99

               
               
               Conread position:179-383
               
               
               Cow position:chr5:43737856-43738051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:181-378
               
               
               Cow position:chr5:8162712-8162912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:190-378
               
               
               Cow position:chr5:57561619-57561428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:190-384
               
               
               Cow position:chr5:16509202-16508997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:190-384
               
               
               Cow position:chr5:40039670-40039868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:190-384
               
               
               Cow position:chr5:56518126-56518308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:190-384
               
               
               Cow position:chr5:56820168-56820360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:190-384
               
               
               Cow position:chr5:69520987-69520795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 93

               
               
               Conread position:191-384
               
               
               Cow position:chr5:65883677-65883874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:192-378
               
               
               Cow position:chr5:51935283-51935101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:194-384
               
               
               Cow position:chr5:65601549-65601362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:196-333
               
               
               Cow position:chr5:29371580-29371441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:201-384
               
               
               Cow position:chr5:31144702-31144885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):63, 86

               
               
               Conread position:203-384
               
               
               Cow position:chr5:34638967-34638786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:208-384
               
               
               Cow position:chr5:32140630-32140806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 81

               
               
               Conread position:212-384
               
               
               Cow position:chr5:6670119-6670292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:233-387
               
               
               Cow position:chr5:51800919-51801074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:236-384
               
               
               Cow position:chr5:34916181-34916041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:240-384
               
               
               Cow position:chr5:27015726-27015586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 45
Show alignments to all cow chromosomes.
Conread position:	1-273
Cow position:	chr5:60212872-60212596 (view UCSC Genome Browser custom track)
Alignm length:	279
Alignm identity:	184
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	40, 53
Conread position:	1-348
Cow position:	chr5:20843116-20843462 (view UCSC Genome Browser custom track)
Alignm length:	356
Alignm identity:	231
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	118, 36
Conread position:	1-384
Cow position:	chr5:51053369-51053746 (view UCSC Genome Browser custom track)
Alignm length:	391
Alignm identity:	258
Alignm E-value:	4e-36
Alignm gaps (pig, cow):	139, 30
Conread position:	2-249
Cow position:	chr5:40122315-40122573 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	179
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	48, 193
Conread position:	2-272
Cow position:	chr5:51246855-51247118 (view UCSC Genome Browser custom track)
Alignm length:	275
Alignm identity:	187
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	22, 56
Conread position:	2-296
Cow position:	chr5:34914767-34915062 (view UCSC Genome Browser custom track)
Alignm length:	300
Alignm identity:	213
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	59, 154
Conread position:	2-338
Cow position:	chr5:57393022-57393354 (view UCSC Genome Browser custom track)
Alignm length:	345
Alignm identity:	230
Alignm E-value:	5e-29
Alignm gaps (pig, cow):	23, 48
Conread position:	2-384
Cow position:	chr5:44673987-44673589 (view UCSC Genome Browser custom track)
Alignm length:	403
Alignm identity:	256
Alignm E-value:	9e-24
Alignm gaps (pig, cow):	29, 51
Conread position:	5-378
Cow position:	chr5:16937761-16938099 (view UCSC Genome Browser custom track)
Alignm length:	375
Alignm identity:	247
Alignm E-value:	3e-23
Alignm gaps (pig, cow):	259, 17
Conread position:	7-410
Cow position:	chr5:12874026-12873621 (view UCSC Genome Browser custom track)
Alignm length:	415
Alignm identity:	271
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	97, 18
Conread position:	8-346
Cow position:	chr5:66531188-66530858 (view UCSC Genome Browser custom track)
Alignm length:	341
Alignm identity:	232
Alignm E-value:	5e-39
Alignm gaps (pig, cow):	255, 14
Conread position:	8-384
Cow position:	chr5:20128334-20127957 (view UCSC Genome Browser custom track)
Alignm length:	385
Alignm identity:	254
Alignm E-value:	1e-36
Alignm gaps (pig, cow):	34, 172
Conread position:	9-272
Cow position:	chr5:2240714-2240976 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	192
Alignm E-value:	5e-39
Alignm gaps (pig, cow):	18, 54
Conread position:	10-383
Cow position:	chr5:30845382-30845016 (view UCSC Genome Browser custom track)
Alignm length:	378
Alignm identity:	258
Alignm E-value:	2.8026e-45
Alignm gaps (pig, cow):	254, 118
Conread position:	10-384
Cow position:	chr5:44049974-44049600 (view UCSC Genome Browser custom track)
Alignm length:	382
Alignm identity:	248
Alignm E-value:	8e-33
Alignm gaps (pig, cow):	144, 27
Conread position:	12-217
Cow position:	chr5:32976032-32975827 (view UCSC Genome Browser custom track)
Alignm length:	214
Alignm identity:	160
Alignm E-value:	6e-30
Alignm gaps (pig, cow):	132, 38
Conread position:	12-246
Cow position:	chr5:61043459-61043226 (view UCSC Genome Browser custom track)
Alignm length:	238
Alignm identity:	157
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	144, 36
Conread position:	12-384
Cow position:	chr5:57074061-57074432 (view UCSC Genome Browser custom track)
Alignm length:	379
Alignm identity:	277
Alignm E-value:	0
Alignm gaps (pig, cow):	48, 76
Conread position:	12-386
Cow position:	chr5:58519140-58519499 (view UCSC Genome Browser custom track)
Alignm length:	381
Alignm identity:	248
Alignm E-value:	4e-26
Alignm gaps (pig, cow):	19, 79
Conread position:	20-378
Cow position:	chr5:3282100-3281746 (view UCSC Genome Browser custom track)
Alignm length:	366
Alignm identity:	238
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	127, 30