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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8012I13.3
        

               
Conread position:
               
1-368
               

               
Cow position:
               
chr6:16746642-16746275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
153, 52
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr6:22215154-22215537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 254
               

               
Conread position:
               
1-378
               

               
Cow position:
               
chr6:10176004-10176374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
115, 49
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr6:17997020-17997399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
141, 56
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr6:66839492-66839219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
2-377
               

               
Cow position:
               
chr6:5095238-5095624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 96
               

               
Conread position:
               
2-381
               

               
Cow position:
               
chr6:23024808-23025193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
145, 51
               

               
Conread position:
               
2-382
               

               
Cow position:
               
chr6:67215041-67214662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
3-244
               

               
Cow position:
               
chr6:15587299-15587539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr6:53346261-53346019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
169, 61
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chr6:5844877-5845235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
150, 22
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr6:38771564-38771202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
261, 63
               

               
Conread position:
               
4-303
               

               
Cow position:
               
chr6:47783162-47782858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
4-442
               

               
Cow position:
               
chr6:43345146-43345582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 61
               

               
Conread position:
               
5-385
               

               
Cow position:
               
chr6:64432225-64431853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
222, 26
               

               
Conread position:
               
7-384
               

               
Cow position:
               
chr6:2607896-2607532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
144, 21
               

               
Conread position:
               
8-378
               

               
Cow position:
               
chr6:12338283-12337909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
8-378
               

               
Cow position:
               
chr6:67282184-67281819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
12-331
               

               
Cow position:
               
chr6:6201715-6201397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 36
               

               
Conread position:
               
12-368
               

               
Cow position:
               
chr6:33207016-33206673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
14, 10
               

               
Conread position:
               
14-326
               

               
Cow position:
               
chr6:41014686-41015003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 278
               

               
Conread position:
               
14-371
               

               
Cow position:
               
chr6:6724794-6724431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
154, 121
               

               
Conread position:
               
14-384
               

               
Cow position:
               
chr6:14949204-14949563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
17-252
               

               
Cow position:
               
chr6:19810222-19809983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
20-369
               

               
Cow position:
               
chr6:67643406-67643760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 123
               

               
Conread position:
               
22-289
               

               
Cow position:
               
chr6:21476003-21475736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
24-378
               

               
Cow position:
               
chr6:17816716-17817060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
25-352
               

               
Cow position:
               
chr6:62929771-62929443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
129, 39
               

               
Conread position:
               
25-378
               

               
Cow position:
               
chr6:60784144-60783795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
112, 39
               

               
Conread position:
               
25-384
               

               
Cow position:
               
chr6:120513-120159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
26-224
               

               
Cow position:
               
chr6:59687540-59687737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
128, 16
               

               
Conread position:
               
26-283
               

               
Cow position:
               
chr6:21715322-21715064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
26-348
               

               
Cow position:
               
chr6:53145405-53145731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 165
               

               
Conread position:
               
26-378
               

               
Cow position:
               
chr6:20157608-20157253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
26-411
               

               
Cow position:
               
chr6:22332121-22332503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 169
               

               
Conread position:
               
27-266
               

               
Cow position:
               
chr6:22876661-22876898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
109, 21
               

               
Conread position:
               
27-268
               

               
Cow position:
               
chr6:23938324-23938092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
27-273
               

               
Cow position:
               
chr6:14056195-14056444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 69
               

               
Conread position:
               
27-285
               

               
Cow position:
               
chr6:30501851-30502110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
33, 153
               

               
Conread position:
               
27-384
               

               
Cow position:
               
chr6:1769923-1770279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
113, 38
               

               
Conread position:
               
28-246
               

               
Cow position:
               
chr6:4323593-4323383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
28-364
               

               
Cow position:
               
chr6:23353827-23353489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
137, 97
               

               
Conread position:
               
28-383
               

               
Cow position:
               
chr6:40032450-40032110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
28-384
               

               
Cow position:
               
chr6:9219535-9219189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
32, 115
               

               
Conread position:
               
29-252
               

               
Cow position:
               
chr6:56061932-56061708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
115, 24
               

               
Conread position:
               
29-299
               

               
Cow position:
               
chr6:6168956-6168690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
178, 28
               

               
Conread position:
               
29-320
               

               
Cow position:
               
chr6:50863212-50862920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
153, 19
               

               
Conread position:
               
29-369
               

               
Cow position:
               
chr6:51541280-51540938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
29-383
               

               
Cow position:
               
chr6:17557648-17557298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
29-383
               

               
Cow position:
               
chr6:38610244-38609885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
12, 36
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr6:7539838-7539489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
164, 19
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr6:50747268-50746900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
151, 8
               

               
Conread position:
               
29-384
               

               
Cow position:
               
chr6:53178895-53178554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
133, 24
               

               
Conread position:
               
30-241
               

               
Cow position:
               
chr6:14263621-14263832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
114, 43
               

               
Conread position:
               
30-317
               

               
Cow position:
               
chr6:64428928-64429214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
30-384
               

               
Cow position:
               
chr6:54854517-54854165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
31-252
               

               
Cow position:
               
chr6:27636582-27636362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
104, 52
               

               
Conread position:
               
31-275
               

               
Cow position:
               
chr6:8366081-8365835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
100, 33
               

               
Conread position:
               
31-297
               

               
Cow position:
               
chr6:29775891-29775624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
10, 154
               

               
Conread position:
               
31-339
               

               
Cow position:
               
chr6:50269412-50269712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
31-346
               

               
Cow position:
               
chr6:93933-94236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
228, 22
               

               
Conread position:
               
31-364
               

               
Cow position:
               
chr6:17705101-17704758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
31-368
               

               
Cow position:
               
chr6:32044118-32043784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
106, 129
               

               
Conread position:
               
31-379
               

               
Cow position:
               
chr6:2624037-2623703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
31-382
               

               
Cow position:
               
chr6:15937583-15937933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
34, 272
               

               
Conread position:
               
31-383
               

               
Cow position:
               
chr6:59719077-59718713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
31-385
               

               
Cow position:
               
chr6:23401727-23402075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
233, 112
               

               
Conread position:
               
32-243
               

               
Cow position:
               
chr6:53811856-53811639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
32-251
               

               
Cow position:
               
chr6:63168492-63168715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
32-300
               

               
Cow position:
               
chr6:42035037-42034773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
32-364
               

               
Cow position:
               
chr6:19754810-19755139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 136
               

               
Conread position:
               
32-378
               

               
Cow position:
               
chr6:1370966-1371305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
32-381
               

               
Cow position:
               
chr6:8562983-8562639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
25, 56
               

               
Conread position:
               
33-272
               

               
Cow position:
               
chr6:55548271-55548507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
229, 17
               

               
Conread position:
               
33-273
               

               
Cow position:
               
chr6:54846010-54846253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
104, 127
               

               
Conread position:
               
33-343
               

               
Cow position:
               
chr6:13367549-13367242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
33-368
               

               
Cow position:
               
chr6:54490480-54490803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
231, 107
               

               
Conread position:
               
33-384
               

               
Cow position:
               
chr6:57571749-57571393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 124
               

               
Conread position:
               
33-394
               

               
Cow position:
               
chr6:52478150-52478509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 16
               

               
Conread position:
               
34-262
               

               
Cow position:
               
chr6:3937048-3936822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
34-282
               

               
Cow position:
               
chr6:12623777-12623532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
6, 97
               

               
Conread position:
               
34-378
               

               
Cow position:
               
chr6:21399492-21399828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
119, 16
               

               
Conread position:
               
34-384
               

               
Cow position:
               
chr6:44566691-44566332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 127
               

               
Conread position:
               
35-289
               

               
Cow position:
               
chr6:55296829-55297086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
35-378
               

               
Cow position:
               
chr6:48187308-48187657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
35-384
               

               
Cow position:
               
chr6:8637531-8637193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
35-384
               

               
Cow position:
               
chr6:31535306-31535651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 113
               

               
Conread position:
               
36-260
               

               
Cow position:
               
chr6:66979129-66978909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
37-367
               

               
Cow position:
               
chr6:37395141-37395475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr6:8966348-8966009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 20
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr6:24031628-24031295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
11, 112
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr6:54035880-54036219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr6:55209820-55209472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
38-230
               

               
Cow position:
               
chr6:16411873-16411680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 26
               

               
Conread position:
               
38-325
               

               
Cow position:
               
chr6:62056873-62056587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
38-337
               

               
Cow position:
               
chr6:67728637-67728333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
108, 15
               

               
Conread position:
               
38-368
               

               
Cow position:
               
chr6:18447255-18447578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
106, 15
               

               
Conread position:
               
38-377
               

               
Cow position:
               
chr6:22985600-22985935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
38-378
               

               
Cow position:
               
chr6:4691703-4692057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 154
               

               
Conread position:
               
38-384
               

               
Cow position:
               
chr6:6063032-6063375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
111, 26
               

               
Conread position:
               
39-346
               

               
Cow position:
               
chr6:3351289-3350973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 88
               

               
Conread position:
               
39-384
               

               
Cow position:
               
chr6:16266988-16266635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
96, 25
               

               
Conread position:
               
39-384
               

               
Cow position:
               
chr6:35989977-35990317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
39-384
               

               
Cow position:
               
chr6:60859040-60859386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
130, 14
               

               
Conread position:
               
40-364
               

               
Cow position:
               
chr6:8161426-8161756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
116, 149
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chr6:29485342-29485006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 105
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chr6:44078773-44078434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
104, 17
               

               
Conread position:
               
41-230
               

               
Cow position:
               
chr6:63182541-63182358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
41-238
               

               
Cow position:
               
chr6:68246573-68246772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
116, 153
               

               
Conread position:
               
41-255
               

               
Cow position:
               
chr6:8468916-8468710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
41-270
               

               
Cow position:
               
chr6:66259994-66259758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
41-308
               

               
Cow position:
               
chr6:52658211-52657939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
106, 32
               

               
Conread position:
               
41-366
               

               
Cow position:
               
chr6:32126308-32125998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
41-375
               

               
Cow position:
               
chr6:55545913-55546252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
16, 136
               

               
Conread position:
               
41-383
               

               
Cow position:
               
chr6:4383732-4383403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
41-384
               

               
Cow position:
               
chr6:28155915-28156231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
41-386
               

               
Cow position:
               
chr6:46173001-46173338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 12
               

               
Conread position:
               
42-384
               

               
Cow position:
               
chr6:13565347-13565000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
42-387
               

               
Cow position:
               
chr6:56850276-56849925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
43-332
               

               
Cow position:
               
chr6:3330253-3329955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 145
               

               
Conread position:
               
43-384
               

               
Cow position:
               
chr6:54431092-54430739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 155
               

               
Conread position:
               
43-384
               

               
Cow position:
               
chr6:61114020-61113670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
111, 21
               

               
Conread position:
               
44-252
               

               
Cow position:
               
chr6:62724812-62724603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
105, 20
               

               
Conread position:
               
46-241
               

               
Cow position:
               
chr6:49686071-49685877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
46-374
               

               
Cow position:
               
chr6:17068404-17068723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 11
               

               
Conread position:
               
46-384
               

               
Cow position:
               
chr6:37463257-37462938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
218, 10
               

               
Conread position:
               
47-230
               

               
Cow position:
               
chr6:36570720-36570529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
47-302
               

               
Cow position:
               
chr6:5820010-5820249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
224, 10
               

               
Conread position:
               
47-382
               

               
Cow position:
               
chr6:60273761-60274090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 16
               

               
Conread position:
               
47-383
               

               
Cow position:
               
chr6:32268635-32268959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
212, 185
               

               
Conread position:
               
47-384
               

               
Cow position:
               
chr6:48988685-48988353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
105, 17
               

               
Conread position:
               
47-384
               

               
Cow position:
               
chr6:54207881-54208224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
48-265
               

               
Cow position:
               
chr6:5601951-5601737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
48-309
               

               
Cow position:
               
chr6:13653597-13653341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 168
               

               
Conread position:
               
48-313
               

               
Cow position:
               
chr6:32453640-32453373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
50, 138
               

               
Conread position:
               
48-364
               

               
Cow position:
               
chr6:24536276-24536606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
96, 16
               

               
Conread position:
               
48-383
               

               
Cow position:
               
chr6:65264302-65264622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
216, 5
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr6:16765148-16765481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr6:24110534-24110200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
96, 16
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr6:27888592-27888265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
216, 5
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr6:31564101-31564422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
216, 59
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr6:35181005-35181342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr6:48567110-48567428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
199, 16
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr6:55282041-55282371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
48-384
               

               
Cow position:
               
chr6:67187927-67187602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
109, 5
               

               
Conread position:
               
49-216
               

               
Cow position:
               
chr6:16137515-16137687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
49-220
               

               
Cow position:
               
chr6:7291561-7291395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
49-234
               

               
Cow position:
               
chr6:34463340-34463522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
49-249
               

               
Cow position:
               
chr6:53711651-53711453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
49-382
               

               
Cow position:
               
chr6:13687567-13687895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 25
               

               
Conread position:
               
49-383
               

               
Cow position:
               
chr6:53460322-53460655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr6:21456424-21456772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
49-384
               

               
Cow position:
               
chr6:46466067-46465739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 21
               

               
Conread position:
               
50-204
               

               
Cow position:
               
chr6:63233764-63233611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
50-213
               

               
Cow position:
               
chr6:43770653-43770810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
50-243
               

               
Cow position:
               
chr6:54889851-54889656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
50-247
               

               
Cow position:
               
chr6:55405166-55404964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
11, 139
               

               
Conread position:
               
50-249
               

               
Cow position:
               
chr6:45159806-45160007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
50-260
               

               
Cow position:
               
chr6:41657514-41657307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
50-268
               

               
Cow position:
               
chr6:16091146-16090934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
214, 78
               

               
Conread position:
               
50-281
               

               
Cow position:
               
chr6:60850948-60850719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
214, 95
               

               
Conread position:
               
50-297
               

               
Cow position:
               
chr6:54831727-54831478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
101, 136
               

               
Conread position:
               
50-300
               

               
Cow position:
               
chr6:58459966-58459720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
214, 65
               

               
Conread position:
               
50-317
               

               
Cow position:
               
chr6:35318884-35319153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
107, 126
               

               
Conread position:
               
50-318
               

               
Cow position:
               
chr6:35728098-35727823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
50-321
               

               
Cow position:
               
chr6:26155395-26155130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
50-326
               

               
Cow position:
               
chr6:47779129-47778847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 120
               

               
Conread position:
               
50-328
               

               
Cow position:
               
chr6:56716058-56715791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 71
               

               
Conread position:
               
50-343
               

               
Cow position:
               
chr6:8125582-8125282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 131
               

               
Conread position:
               
50-344
               

               
Cow position:
               
chr6:7130612-7130934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
50-344
               

               
Cow position:
               
chr6:68376066-68376369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
75, 134
               

               
Conread position:
               
50-345
               

               
Cow position:
               
chr6:2078567-2078865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 78
               

               
Conread position:
               
50-345
               

               
Cow position:
               
chr6:55417285-55417572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
212, 15
               

               
Conread position:
               
50-367
               

               
Cow position:
               
chr6:7189880-7190186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
50-373
               

               
Cow position:
               
chr6:24339538-24339211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
51, 118
               

               
Conread position:
               
50-377
               

               
Cow position:
               
chr6:6060325-6060640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
94, 41
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr6:33302646-33302333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 191
               

               
Conread position:
               
50-378
               

               
Cow position:
               
chr6:33510040-33509712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
7, 145
               

               
Conread position:
               
50-382
               

               
Cow position:
               
chr6:1429882-1429557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
214, 15
               

               
Conread position:
               
50-382
               

               
Cow position:
               
chr6:7119381-7119692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
214, 91
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr6:11192229-11192549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 126
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr6:17313988-17313651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr6:19045878-19045541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr6:25614841-25615187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
50-383
               

               
Cow position:
               
chr6:26728295-26728608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
298, 42
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr6:10225401-10225723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 187
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr6:15300591-15300903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
214, 77
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr6:15446944-15447287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr6:19264251-19264580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 37
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr6:36196453-36196130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
5, 46
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr6:50090896-50090561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
10, 130
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr6:51581005-51581337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr6:54365080-54365415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
94, 132
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr6:58370996-58370669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
209, 77
               

               
Conread position:
               
50-384
               

               
Cow position:
               
chr6:59602967-59603291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 23
               

               
Conread position:
               
51-257
               

               
Cow position:
               
chr6:24514284-24514503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
51-376
               

               
Cow position:
               
chr6:39358095-39358421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
192, 94
               

               
Conread position:
               
51-383
               

               
Cow position:
               
chr6:143130-143451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
213, 84
               

               
Conread position:
               
51-383
               

               
Cow position:
               
chr6:35436235-35435912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
212, 71
               

               
Conread position:
               
51-383
               

               
Cow position:
               
chr6:38640479-38640148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 30
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr6:6965144-6965475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr6:10399661-10399985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
51-384
               

               
Cow position:
               
chr6:53024564-53024879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
211, 6
               

               
Conread position:
               
52-221
               

               
Cow position:
               
chr6:66058462-66058629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
52-238
               

               
Cow position:
               
chr6:14383923-14383737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
90, 127
               

               
Conread position:
               
52-245
               

               
Cow position:
               
chr6:58697383-58697577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
52-247
               

               
Cow position:
               
chr6:53765646-53765838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
95, 126
               

               
Conread position:
               
52-319
               

               
Cow position:
               
chr6:42567742-42567472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 12
               

               
Conread position:
               
52-373
               

               
Cow position:
               
chr6:14913987-14914314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 56
               

               
Conread position:
               
52-383
               

               
Cow position:
               
chr6:57404889-57405206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
212, 93
               

               
Conread position:
               
52-384
               

               
Cow position:
               
chr6:13040699-13040373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
52-384
               

               
Cow position:
               
chr6:60850134-60850470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 12
               

               
Conread position:
               
52-385
               

               
Cow position:
               
chr6:17414204-17414533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 13
               

               
Conread position:
               
52-397
               

               
Cow position:
               
chr6:36203068-36202733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 169
               

               
Conread position:
               
53-199
               

               
Cow position:
               
chr6:59759415-59759271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr6:1945202-1945041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
53-229
               

               
Cow position:
               
chr6:35743227-35743049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 39
               

               
Conread position:
               
53-235
               

               
Cow position:
               
chr6:37994451-37994273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
53-237
               

               
Cow position:
               
chr6:58173588-58173412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
53-241
               

               
Cow position:
               
chr6:18776492-18776309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
53-244
               

               
Cow position:
               
chr6:50883432-50883620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 18
               

               
Conread position:
               
53-252
               

               
Cow position:
               
chr6:23058460-23058259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 99
               

               
Conread position:
               
53-277
               

               
Cow position:
               
chr6:21183978-21184199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
53-289
               

               
Cow position:
               
chr6:54127575-54127803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
211, 87
               

               
Conread position:
               
53-290
               

               
Cow position:
               
chr6:42483661-42483423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 110
               

               
Conread position:
               
53-319
               

               
Cow position:
               
chr6:53546275-53546016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
214, 73
               

               
Conread position:
               
53-345
               

               
Cow position:
               
chr6:51538826-51539128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
53-348
               

               
Cow position:
               
chr6:12965100-12964805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
53-355
               

               
Cow position:
               
chr6:6194856-6195166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
96, 135
               

               
Conread position:
               
53-374
               

               
Cow position:
               
chr6:68272849-68272507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
113, 135
               

               
Conread position:
               
53-383
               

               
Cow position:
               
chr6:61169008-61168692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr6:15305817-15305497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 122
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr6:17090826-17090515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
230, 20
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr6:19293044-19292714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
211, 112
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr6:32122142-32121827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr6:35726338-35726011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
7, 91
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr6:46282746-46283084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
74, 292
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr6:50577762-50577440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr6:59620902-59620585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
98, 123
               

               
Conread position:
               
53-385
               

               
Cow position:
               
chr6:27239758-27240092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
93, 85
               

               
Conread position:
               
54-261
               

               
Cow position:
               
chr6:410976-411175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
54-269
               

               
Cow position:
               
chr6:41226602-41226799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
54-274
               

               
Cow position:
               
chr6:12761525-12761304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
54-325
               

               
Cow position:
               
chr6:68685785-68685529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
210, 73
               

               
Conread position:
               
54-378
               

               
Cow position:
               
chr6:60057393-60057731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 237
               

               
Conread position:
               
54-383
               

               
Cow position:
               
chr6:51526735-51526408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
54-384
               

               
Cow position:
               
chr6:17548723-17549065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
54-394
               

               
Cow position:
               
chr6:38441425-38441080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
74, 196
               

               
Conread position:
               
54-397
               

               
Cow position:
               
chr6:67574635-67574311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
95, 123
               

               
Conread position:
               
55-238
               

               
Cow position:
               
chr6:48278651-48278831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
163, 36
               

               
Conread position:
               
55-338
               

               
Cow position:
               
chr6:66570669-66570399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
209, 36
               

               
Conread position:
               
55-384
               

               
Cow position:
               
chr6:15243083-15242752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 239
               

               
Conread position:
               
55-384
               

               
Cow position:
               
chr6:15243505-15243172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
55-387
               

               
Cow position:
               
chr6:16287823-16288140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
209, 40
               

               
Conread position:
               
56-241
               

               
Cow position:
               
chr6:57467842-57467655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
56-271
               

               
Cow position:
               
chr6:51933782-51933582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
208, 58
               

               
Conread position:
               
56-282
               

               
Cow position:
               
chr6:21470189-21470412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
208, 83
               

               
Conread position:
               
56-368
               

               
Cow position:
               
chr6:18117806-18118120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
56-378
               

               
Cow position:
               
chr6:8600248-8599927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
91, 38
               

               
Conread position:
               
56-383
               

               
Cow position:
               
chr6:47520297-47519967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
56-384
               

               
Cow position:
               
chr6:10039969-10039637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
91, 121
               

               
Conread position:
               
56-384
               

               
Cow position:
               
chr6:10105740-10106075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 35
               

               
Conread position:
               
56-384
               

               
Cow position:
               
chr6:11247011-11246679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
98, 119
               

               
Conread position:
               
56-384
               

               
Cow position:
               
chr6:63093671-63094010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
57-236
               

               
Cow position:
               
chr6:35341945-35342118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
79, 35
               

               
Conread position:
               
57-238
               

               
Cow position:
               
chr6:26408260-26408443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
57-241
               

               
Cow position:
               
chr6:36939116-36938926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
57-282
               

               
Cow position:
               
chr6:30024119-30023902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
207, 34
               

               
Conread position:
               
57-282
               

               
Cow position:
               
chr6:47246024-47245798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 125
               

               
Conread position:
               
57-310
               

               
Cow position:
               
chr6:21535282-21535028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
79, 97
               

               
Conread position:
               
57-321
               

               
Cow position:
               
chr6:21293256-21293518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
186, 83
               

               
Conread position:
               
57-325
               

               
Cow position:
               
chr6:48097361-48097627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
140, 34
               

               
Conread position:
               
57-326
               

               
Cow position:
               
chr6:63066079-63065798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
57-329
               

               
Cow position:
               
chr6:67451422-67451675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
57-332
               

               
Cow position:
               
chr6:60265926-60266214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 224
               

               
Conread position:
               
57-339
               

               
Cow position:
               
chr6:611786-611511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
57-343
               

               
Cow position:
               
chr6:67451130-67451415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
57-352
               

               
Cow position:
               
chr6:60468473-60468185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
135, 28
               

               
Conread position:
               
57-378
               

               
Cow position:
               
chr6:21061649-21061967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
207, 70
               

               
Conread position:
               
57-378
               

               
Cow position:
               
chr6:36470336-36470644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
206, 38
               

               
Conread position:
               
57-382
               

               
Cow position:
               
chr6:29210719-29210415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
180, 64
               

               
Conread position:
               
57-382
               

               
Cow position:
               
chr6:49421554-49421865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
97, 37
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr6:2547503-2547162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr6:23696236-23695910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
210, 35
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr6:24468157-24468477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 84
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr6:32287873-32287554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr6:37149424-37149103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
207, 23
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr6:37332353-37332023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr6:65871273-65870944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 64
               

               
Conread position:
               
58-238
               

               
Cow position:
               
chr6:34423219-34423397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
58-238
               

               
Cow position:
               
chr6:44543906-44544087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 101
               

               
Conread position:
               
58-257
               

               
Cow position:
               
chr6:25772978-25773173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 71
               

               
Conread position:
               
58-297
               

               
Cow position:
               
chr6:1866972-1866735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
58-355
               

               
Cow position:
               
chr6:51529949-51530241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
58-368
               

               
Cow position:
               
chr6:3596035-3595723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
96, 118
               

               
Conread position:
               
58-378
               

               
Cow position:
               
chr6:4469007-4468690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
58-378
               

               
Cow position:
               
chr6:61514957-61515269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
58-384
               

               
Cow position:
               
chr6:48282236-48281912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
111, 86
               

               
Conread position:
               
58-384
               

               
Cow position:
               
chr6:55186327-55186656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
116, 98
               

               
Conread position:
               
58-384
               

               
Cow position:
               
chr6:63720434-63720111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 65
               

               
Conread position:
               
58-394
               

               
Cow position:
               
chr6:57545988-57546316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
58-401
               

               
Cow position:
               
chr6:47356067-47355725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
57, 144
               

               
Conread position:
               
59-224
               

               
Cow position:
               
chr6:62805885-62805718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
85, 119
               

               
Conread position:
               
59-238
               

               
Cow position:
               
chr6:55919692-55919873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
97, 130
               

               
Conread position:
               
59-238
               

               
Cow position:
               
chr6:63020582-63020404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
88, 107
               

               
Conread position:
               
59-241
               

               
Cow position:
               
chr6:28561928-28562110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
59-247
               

               
Cow position:
               
chr6:33960408-33960597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 112
               

               
Conread position:
               
59-255
               

               
Cow position:
               
chr6:6614865-6614665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
59-258
               

               
Cow position:
               
chr6:36225350-36225150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
84, 127
               

               
Conread position:
               
59-283
               

               
Cow position:
               
chr6:58304652-58304430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
59-324
               

               
Cow position:
               
chr6:47540600-47540871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
88, 128
               

               
Conread position:
               
59-345
               

               
Cow position:
               
chr6:28972793-28973080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
78, 98
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr6:22850012-22850329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 119
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr6:30122927-30123276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 128
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr6:47575131-47574821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 62
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr6:50467378-50467051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 265
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr6:59798889-59798573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 33
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr6:65702169-65702484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
107, 200
               

               
Conread position:
               
59-403
               

               
Cow position:
               
chr6:43134701-43135037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
75, 24
               

               
Conread position:
               
60-217
               

               
Cow position:
               
chr6:21346914-21347068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
60-225
               

               
Cow position:
               
chr6:5445907-5445742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 122
               

               
Conread position:
               
60-234
               

               
Cow position:
               
chr6:19936329-19936504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
86, 126
               

               
Conread position:
               
60-244
               

               
Cow position:
               
chr6:32006217-32006399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
60-245
               

               
Cow position:
               
chr6:66329464-66329648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
96, 34
               

               
Conread position:
               
60-250
               

               
Cow position:
               
chr6:35984895-35985087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
86, 111
               

               
Conread position:
               
60-250
               

               
Cow position:
               
chr6:60186412-60186613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
60-304
               

               
Cow position:
               
chr6:57320359-57320588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
205, 80
               

               
Conread position:
               
60-324
               

               
Cow position:
               
chr6:50504695-50504429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 69
               

               
Conread position:
               
60-325
               

               
Cow position:
               
chr6:1941595-1941863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
151, 85
               

               
Conread position:
               
60-332
               

               
Cow position:
               
chr6:45690380-45690635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
204, 14
               

               
Conread position:
               
60-344
               

               
Cow position:
               
chr6:62437656-62437370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 231
               

               
Conread position:
               
60-348
               

               
Cow position:
               
chr6:7128165-7128455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
204, 77
               

               
Conread position:
               
60-351
               

               
Cow position:
               
chr6:7628208-7627911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
67, 133
               

               
Conread position:
               
60-352
               

               
Cow position:
               
chr6:60143960-60144251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 96
               

               
Conread position:
               
60-365
               

               
Cow position:
               
chr6:32866982-32867276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
170, 54
               

               
Conread position:
               
60-368
               

               
Cow position:
               
chr6:21004919-21004606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
86, 258
               

               
Conread position:
               
60-371
               

               
Cow position:
               
chr6:581501-581815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 189
               

               
Conread position:
               
60-376
               

               
Cow position:
               
chr6:693906-694223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 86
               

               
Conread position:
               
60-378
               

               
Cow position:
               
chr6:46558293-46557976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
202, 85
               

               
Conread position:
               
60-383
               

               
Cow position:
               
chr6:45388560-45388247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 50
               

               
Conread position:
               
60-383
               

               
Cow position:
               
chr6:46859932-46860247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 13
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr6:323063-323386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
98, 134
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr6:18080277-18080592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
122, 106
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr6:44194317-44194626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 31
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr6:53841264-53841583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 246
               

               
Conread position:
               
60-384
               

               
Cow position:
               
chr6:63251682-63252007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
89, 120
               

               
Conread position:
               
60-385
               

               
Cow position:
               
chr6:9736406-9736730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
56, 129
               

               
Conread position:
               
60-427
               

               
Cow position:
               
chr6:18954853-18955192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
147, 32
               

               
Conread position:
               
61-219
               

               
Cow position:
               
chr6:54406567-54406719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
61-262
               

               
Cow position:
               
chr6:36537125-36537323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
61-272
               

               
Cow position:
               
chr6:50771123-50771332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
61-274
               

               
Cow position:
               
chr6:57079664-57079448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
85, 125
               

               
Conread position:
               
61-316
               

               
Cow position:
               
chr6:58725605-58725359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
201, 83
               

               
Conread position:
               
61-352
               

               
Cow position:
               
chr6:18608572-18608867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
85, 121
               

               
Conread position:
               
61-378
               

               
Cow position:
               
chr6:34475320-34475629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
72, 110
               

               
Conread position:
               
61-384
               

               
Cow position:
               
chr6:3952759-3952435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
86, 129
               

               
Conread position:
               
61-384
               

               
Cow position:
               
chr6:4559065-4559389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
61-384
               

               
Cow position:
               
chr6:5609204-5609524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 189
               

               
Conread position:
               
62-236
               

               
Cow position:
               
chr6:38033095-38032920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
62-249
               

               
Cow position:
               
chr6:36163983-36163794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 116
               

               
Conread position:
               
62-261
               

               
Cow position:
               
chr6:34721874-34722067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
62-262
               

               
Cow position:
               
chr6:21083304-21083503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
62-273
               

               
Cow position:
               
chr6:61110019-61109813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
202, 79
               

               
Conread position:
               
62-291
               

               
Cow position:
               
chr6:56799654-56799891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
86, 115
               

               
Conread position:
               
62-302
               

               
Cow position:
               
chr6:67069578-67069818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
135, 29
               

               
Conread position:
               
62-343
               

               
Cow position:
               
chr6:23532883-23532614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
200, 33
               

               
Conread position:
               
62-368
               

               
Cow position:
               
chr6:9302486-9302784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
202, 63
               

               
Conread position:
               
62-378
               

               
Cow position:
               
chr6:5330651-5330336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
84, 111
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr6:21231749-21231447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
202, 85
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr6:29240169-29239855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
102, 64
               

               
Conread position:
               
62-384
               

               
Cow position:
               
chr6:67951194-67950869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
63-324
               

               
Cow position:
               
chr6:57089440-57089172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
63-329
               

               
Cow position:
               
chr6:49437567-49437303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
63-382
               

               
Cow position:
               
chr6:19996851-19996536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
57, 90
               

               
Conread position:
               
63-384
               

               
Cow position:
               
chr6:19402081-19401772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
98, 64
               

               
Conread position:
               
64-240
               

               
Cow position:
               
chr6:51120831-51121009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 104
               

               
Conread position:
               
64-255
               

               
Cow position:
               
chr6:21350796-21350988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
67, 139
               

               
Conread position:
               
64-294
               

               
Cow position:
               
chr6:4699940-4699713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
172, 81
               

               
Conread position:
               
64-301
               

               
Cow position:
               
chr6:58227630-58227370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
64-378
               

               
Cow position:
               
chr6:24781316-24781634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
64-378
               

               
Cow position:
               
chr6:66131554-66131228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
80, 185
               

               
Conread position:
               
64-383
               

               
Cow position:
               
chr6:38207250-38207574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
64-384
               

               
Cow position:
               
chr6:48803405-48803720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 74
               

               
Conread position:
               
65-226
               

               
Cow position:
               
chr6:2014359-2014202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
65-384
               

               
Cow position:
               
chr6:34195928-34196234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
125, 56
               

               
Conread position:
               
65-384
               

               
Cow position:
               
chr6:49398395-49398698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
65-394
               

               
Cow position:
               
chr6:5302168-5302511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
66, 175
               

               
Conread position:
               
68-377
               

               
Cow position:
               
chr6:60118373-60118073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
196, 61
               

               
Conread position:
               
68-384
               

               
Cow position:
               
chr6:19446484-19446175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
64, 56
               

               
Conread position:
               
68-384
               

               
Cow position:
               
chr6:67617716-67618039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
69-302
               

               
Cow position:
               
chr6:48379381-48379616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
80, 194
               

               
Conread position:
               
69-367
               

               
Cow position:
               
chr6:58732070-58732373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
121, 168
               

               
Conread position:
               
71-220
               

               
Cow position:
               
chr6:2758010-2757864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
71-282
               

               
Cow position:
               
chr6:61681306-61681094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
100, 117
               

               
Conread position:
               
71-341
               

               
Cow position:
               
chr6:60517066-60516786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
58, 159
               

               
Conread position:
               
71-384
               

               
Cow position:
               
chr6:16262009-16261699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
117, 185
               

               
Conread position:
               
72-225
               

               
Cow position:
               
chr6:8726904-8726752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
72-248
               

               
Cow position:
               
chr6:48793007-48792829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 106
               

               
Conread position:
               
72-344
               

               
Cow position:
               
chr6:31806698-31806978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 88
               

               
Conread position:
               
72-377
               

               
Cow position:
               
chr6:41375997-41375693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
92, 72
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr6:22525552-22525250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
72-383
               

               
Cow position:
               
chr6:41733862-41733542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 115
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr6:17794528-17794840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 220
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr6:35539270-35539590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
86, 188
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr6:38853429-38853738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr6:54133038-54132733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 43
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr6:62670098-62669787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
57, 218
               

               
Conread position:
               
73-252
               

               
Cow position:
               
chr6:40682442-40682615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
73-347
               

               
Cow position:
               
chr6:2585167-2584894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
73-348
               

               
Cow position:
               
chr6:68816396-68816118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
73-384
               

               
Cow position:
               
chr6:5113821-5114129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 143
               

               
Conread position:
               
74-253
               

               
Cow position:
               
chr6:24905847-24905674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
74-379
               

               
Cow position:
               
chr6:47305567-47305261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
72, 96
               

               
Conread position:
               
74-379
               

               
Cow position:
               
chr6:51835623-51835319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 55
               

               
Conread position:
               
74-382
               

               
Cow position:
               
chr6:12091761-12092075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
52, 89
               

               
Conread position:
               
74-382
               

               
Cow position:
               
chr6:46292130-46292426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
117, 55
               

               
Conread position:
               
76-332
               

               
Cow position:
               
chr6:34119140-34119387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
110, 42
               

               
Conread position:
               
76-366
               

               
Cow position:
               
chr6:19696032-19695741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
71, 159
               

               
Conread position:
               
79-298
               

               
Cow position:
               
chr6:1870977-1871195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
71, 49
               

               
Conread position:
               
79-367
               

               
Cow position:
               
chr6:9718697-9718987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
203, 63
               

               
Conread position:
               
79-384
               

               
Cow position:
               
chr6:28483237-28482935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
137, 207
               

               
Conread position:
               
79-384
               

               
Cow position:
               
chr6:60740230-60739931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 43
               

               
Conread position:
               
80-368
               

               
Cow position:
               
chr6:52413081-52412793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
74, 106
               

               
Conread position:
               
80-377
               

               
Cow position:
               
chr6:35842879-35842578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
59, 109
               

               
Conread position:
               
82-213
               

               
Cow position:
               
chr6:53235436-53235566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
82-384
               

               
Cow position:
               
chr6:21736685-21736970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
182, 44
               

               
Conread position:
               
83-328
               

               
Cow position:
               
chr6:36920759-36921003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
57, 66
               

               
Conread position:
               
83-384
               

               
Cow position:
               
chr6:38641710-38641410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
74, 135
               

               
Conread position:
               
86-225
               

               
Cow position:
               
chr6:47698816-47698679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
86-384
               

               
Cow position:
               
chr6:26915541-26915246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 61
               

               
Conread position:
               
89-410
               

               
Cow position:
               
chr6:27851498-27851817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
151, 62
               

               
Conread position:
               
90-383
               

               
Cow position:
               
chr6:40774125-40774435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
90-384
               

               
Cow position:
               
chr6:50984434-50984141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
57, 100
               

               
Conread position:
               
94-384
               

               
Cow position:
               
chr6:20097753-20098048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
95-380
               

               
Cow position:
               
chr6:61524000-61524281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 229
               

               
Conread position:
               
95-384
               

               
Cow position:
               
chr6:61269515-61269226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 51
               

               
Conread position:
               
97-348
               

               
Cow position:
               
chr6:31078666-31078920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
149, 72
               

               
Conread position:
               
98-377
               

               
Cow position:
               
chr6:2153395-2153668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 91
               

               
Conread position:
               
98-378
               

               
Cow position:
               
chr6:21514405-21514691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr6:6067503-6067776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
74, 43
               

               
Conread position:
               
98-384
               

               
Cow position:
               
chr6:36189901-36189613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 136
               

               
Conread position:
               
99-378
               

               
Cow position:
               
chr6:17333850-17334131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 77
               

               
Conread position:
               
113-384
               

               
Cow position:
               
chr6:48112382-48112115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 38
               

               
Conread position:
               
128-257
               

               
Cow position:
               
chr6:28900496-28900369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
128-352
               

               
Cow position:
               
chr6:32809451-32809224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 18
               

               
Conread position:
               
128-368
               

               
Cow position:
               
chr6:37199368-37199598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
138, 24
               

               
Conread position:
               
128-383
               

               
Cow position:
               
chr6:6343601-6343343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
84, 23
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr6:6401120-6400867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 18
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr6:21235213-21234960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr6:21869477-21869732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
136, 153
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr6:24004709-24004459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
14, 158
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chr6:47799465-47799207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
129-331
               

               
Cow position:
               
chr6:19131599-19131398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
135, 23
               

               
Conread position:
               
129-367
               

               
Cow position:
               
chr6:36284414-36284175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 51
               

               
Conread position:
               
130-311
               

               
Cow position:
               
chr6:51463464-51463647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
134, 57
               

               
Conread position:
               
130-348
               

               
Cow position:
               
chr6:68652179-68652401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
130-384
               

               
Cow position:
               
chr6:582103-582355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
131-268
               

               
Cow position:
               
chr6:54349862-54349726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
131-332
               

               
Cow position:
               
chr6:222287-222482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 23
               

               
Conread position:
               
131-368
               

               
Cow position:
               
chr6:35993752-35993518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
133, 43
               

               
Conread position:
               
131-379
               

               
Cow position:
               
chr6:23465866-23466108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
133, 20
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr6:8209437-8209675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr6:16423873-16423616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr6:46571275-46571033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
25, 146
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr6:54867686-54867429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
133, 152
               

               
Conread position:
               
131-384
               

               
Cow position:
               
chr6:54990832-54991087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
132, 155
               

               
Conread position:
               
131-385
               

               
Cow position:
               
chr6:18048859-18049109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
131-442
               

               
Cow position:
               
chr6:35103161-35103477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
122, 21
               

               
Conread position:
               
132-282
               

               
Cow position:
               
chr6:1002097-1002246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
132, 21
               

               
Conread position:
               
132-355
               

               
Cow position:
               
chr6:18144365-18144138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 157
               

               
Conread position:
               
132-382
               

               
Cow position:
               
chr6:528117-528355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
132, 19
               

               
Conread position:
               
132-404
               

               
Cow position:
               
chr6:51675074-51674813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 19
               

               
Conread position:
               
133-345
               

               
Cow position:
               
chr6:1422651-1422440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
130, 13
               

               
Conread position:
               
133-366
               

               
Cow position:
               
chr6:61142396-61142630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
133-385
               

               
Cow position:
               
chr6:66531655-66531907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
131, 85
               

               
Conread position:
               
134-380
               

               
Cow position:
               
chr6:51969242-51968987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
130, 103
               

               
Conread position:
               
134-384
               

               
Cow position:
               
chr6:59069456-59069708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
135-382
               

               
Cow position:
               
chr6:47339191-47339434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
129, 181
               

               
Conread position:
               
135-383
               

               
Cow position:
               
chr6:53652203-53651960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
136-322
               

               
Cow position:
               
chr6:53090172-53089985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
130, 25
               

               
Conread position:
               
137-332
               

               
Cow position:
               
chr6:19259179-19259377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
139-281
               

               
Cow position:
               
chr6:18422831-18422972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 8
               

               
Conread position:
               
139-384
               

               
Cow position:
               
chr6:50976209-50975974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
126, 149
               

               
Conread position:
               
143-375
               

               
Cow position:
               
chr6:59770379-59770156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 8
               

               
Conread position:
               
143-378
               

               
Cow position:
               
chr6:58608287-58608517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
146-378
               

               
Cow position:
               
chr6:42565841-42565611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
146-378
               

               
Cow position:
               
chr6:63047746-63047501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
146-384
               

               
Cow position:
               
chr6:58597351-58597588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
14, 180
               

               
Conread position:
               
146-385
               

               
Cow position:
               
chr6:38218820-38218586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
27, 37
               

               
Conread position:
               
147-343
               

               
Cow position:
               
chr6:19681372-19681571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
147-343
               

               
Cow position:
               
chr6:28976887-28977087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
147-344
               

               
Cow position:
               
chr6:58590426-58590225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
119, 152
               

               
Conread position:
               
147-383
               

               
Cow position:
               
chr6:66874501-66874267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
117, 9
               

               
Conread position:
               
147-384
               

               
Cow position:
               
chr6:4864394-4864632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
117, 139
               

               
Conread position:
               
147-384
               

               
Cow position:
               
chr6:9008459-9008695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
117, 150
               

               
Conread position:
               
147-384
               

               
Cow position:
               
chr6:36652574-36652335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 27
               

               
Conread position:
               
147-414
               

               
Cow position:
               
chr6:66375180-66375442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
117, 135
               

               
Conread position:
               
148-339
               

               
Cow position:
               
chr6:32516958-32517139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
148-383
               

               
Cow position:
               
chr6:17245466-17245690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
148-388
               

               
Cow position:
               
chr6:9452617-9452857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
47, 186
               

               
Conread position:
               
149-273
               

               
Cow position:
               
chr6:57328244-57328366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
149-384
               

               
Cow position:
               
chr6:1886516-1886748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 86
               

               
Conread position:
               
151-384
               

               
Cow position:
               
chr6:1499789-1499556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
113, 31
               

               
Conread position:
               
151-394
               

               
Cow position:
               
chr6:31526195-31525950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
132, 103
               

               
Conread position:
               
152-282
               

               
Cow position:
               
chr6:43651900-43651769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
152-383
               

               
Cow position:
               
chr6:47640285-47640516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
112, 9
               

               
Conread position:
               
152-384
               

               
Cow position:
               
chr6:20929366-20929600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
119, 35
               

               
Conread position:
               
152-384
               

               
Cow position:
               
chr6:28999792-29000009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
71, 16
               

               
Conread position:
               
152-384
               

               
Cow position:
               
chr6:37634943-37634700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
153-345
               

               
Cow position:
               
chr6:32853334-32853141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
111, 74
               

               
Conread position:
               
153-384
               

               
Cow position:
               
chr6:12551417-12551186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 80
               

               
Conread position:
               
153-384
               

               
Cow position:
               
chr6:14958193-14958429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
153-384
               

               
Cow position:
               
chr6:60350145-60350379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
155-368
               

               
Cow position:
               
chr6:33929402-33929618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
155-378
               

               
Cow position:
               
chr6:60667555-60667342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
110, 37
               

               
Conread position:
               
155-384
               

               
Cow position:
               
chr6:52901383-52901150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
156-345
               

               
Cow position:
               
chr6:35613273-35613469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 137
               

               
Conread position:
               
157-384
               

               
Cow position:
               
chr6:45064874-45065098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
108, 128
               

               
Conread position:
               
160-368
               

               
Cow position:
               
chr6:38614952-38614748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
104, 62
               

               
Conread position:
               
161-368
               

               
Cow position:
               
chr6:12845514-12845317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 43
               

               
Conread position:
               
161-383
               

               
Cow position:
               
chr6:8787898-8788121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
102, 152
               

               
Conread position:
               
161-384
               

               
Cow position:
               
chr6:56843293-56843072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
164-382
               

               
Cow position:
               
chr6:49002604-49002816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
211, 67
               

               
Conread position:
               
169-384
               

               
Cow position:
               
chr6:23247836-23248043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 5
               

               
Conread position:
               
174-384
               

               
Cow position:
               
chr6:61608638-61608427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
179-383
               

               
Cow position:
               
chr6:57164550-57164343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
179-384
               

               
Cow position:
               
chr6:899172-899374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
86, 114
               

               
Conread position:
               
179-384
               

               
Cow position:
               
chr6:31635563-31635773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
179-384
               

               
Cow position:
               
chr6:60673686-60673485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
182-381
               

               
Cow position:
               
chr6:28318515-28318323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
185-384
               

               
Cow position:
               
chr6:12542815-12543017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
185-384
               

               
Cow position:
               
chr6:30974157-30973968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
187-338
               

               
Cow position:
               
chr6:12197293-12197139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
187-367
               

               
Cow position:
               
chr6:15022434-15022615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
84, 98
               

               
Conread position:
               
187-383
               

               
Cow position:
               
chr6:130050-130244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
80, 56
               

               
Conread position:
               
190-378
               

               
Cow position:
               
chr6:20206385-20206199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 94
               

               
Conread position:
               
190-384
               

               
Cow position:
               
chr6:25008829-25008626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
191-378
               

               
Cow position:
               
chr6:54936688-54936502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 94
               

               
Conread position:
               
194-378
               

               
Cow position:
               
chr6:31261100-31260927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
194-394
               

               
Cow position:
               
chr6:54600454-54600253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
70, 191
               

               
Conread position:
               
195-383
               

               
Cow position:
               
chr6:52248025-52248214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
15, 105
               

               
Conread position:
               
198-367
               

               
Cow position:
               
chr6:7170246-7170414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
202-365
               

               
Cow position:
               
chr6:67615332-67615496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 91
               

               
Conread position:
               
202-373
               

               
Cow position:
               
chr6:36493443-36493622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
204-366
               

               
Cow position:
               
chr6:1944809-1944645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
60, 38
               

               
Conread position:
               
207-384
               

               
Cow position:
               
chr6:24962238-24962065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
209-384
               

               
Cow position:
               
chr6:12829134-12829308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
213-384
               

               
Cow position:
               
chr6:37376427-37376601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
222-384
               

               
Cow position:
               
chr6:18961438-18961600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 5
               

               
Conread position:
               
223-384
               

               
Cow position:
               
chr6:21542400-21542236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
237-382
               

               
Cow position:
               
chr6:6460605-6460461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
243-378
               

               
Cow position:
               
chr6:53731581-53731444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               
Show alignments to all cow chromosomes.