Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8014P09.5 |
| Conread position: | 485-900 |
| Cow position: | chr1:63201697-63202123 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 489-779 |
| Cow position: | chr1:73973884-73974189 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 83, 46 |
| Conread position: | 489-823 |
| Cow position: | chr1:95945474-95945134 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 28, 155 |
| Conread position: | 489-876 |
| Cow position: | chr1:57975974-57975576 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 153, 86 |
| Conread position: | 489-877 |
| Cow position: | chr1:71070947-71070550 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 489-884 |
| Cow position: | chr1:75255419-75255822 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 490-882 |
| Cow position: | chr1:62131976-62131576 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 490-885 |
| Cow position: | chr1:8108051-8107640 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 42, 111 |
| Conread position: | 493-778 |
| Cow position: | chr1:78280168-78280461 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 7 |
| Conread position: | 497-879 |
| Cow position: | chr1:69321886-69322288 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 24, 262 |
| Conread position: | 499-883 |
| Cow position: | chr1:8625139-8625551 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 290 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 500-885 |
| Cow position: | chr1:36001655-36001265 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 504-888 |
| Cow position: | chr1:101484585-101484979 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 516-885 |
| Cow position: | chr1:62129634-62130011 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 19, 158 |
| Conread position: | 526-881 |
| Cow position: | chr1:90616260-90615901 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 128 |
| Conread position: | 528-769 |
| Cow position: | chr1:42300368-42300616 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 216 |
| Conread position: | 528-821 |
| Cow position: | chr1:30217276-30217584 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 31, 274 |
| Conread position: | 649-896 |
| Cow position: | chr1:44282232-44282465 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 657-880 |
| Cow position: | chr1:494839-495064 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 82, 43 |
| Conread position: | 664-816 |
| Cow position: | chr1:52245910-52245765 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 667-887 |
| Cow position: | chr1:34946809-34947018 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 172, 14 |
| Conread position: | 668-876 |
| Cow position: | chr1:13427208-13427012 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 670-887 |
| Cow position: | chr1:52416416-52416202 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 673-880 |
| Cow position: | chr1:55253682-55253474 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 674-900 |
| Cow position: | chr1:56024314-56024533 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 108 |
| Conread position: | 676-900 |
| Cow position: | chr1:11190318-11190526 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 166, 43 |
| Conread position: | 677-885 |
| Cow position: | chr1:25066962-25066758 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 690-869 |
| Cow position: | chr1:34916591-34916776 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 86 |
| Conread position: | 690-877 |
| Cow position: | chr1:71270696-71270513 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 111, 88 |
| Conread position: | 691-885 |
| Cow position: | chr1:43600329-43600517 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 177, 90 |
| Conread position: | 693-885 |
| Cow position: | chr1:45999037-45998845 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 5, 86 |
| Conread position: | 696-886 |
| Cow position: | chr1:81473370-81473559 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 123, 82 |
| Conread position: | 710-885 |
| Cow position: | chr1:41269258-41269436 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 710-900 |
| Cow position: | chr1:50370499-50370301 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 67 |
| Conread position: | 722-869 |
| Cow position: | chr1:55050572-55050715 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 94, 40 |
Show alignments to all cow chromosomes.