Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8014P09.5 |
| Conread position: | 442-886 |
| Cow position: | chr3:43319360-43318912 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 489-618 |
| Cow position: | chr3:41205752-41205619 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 489-633 |
| Cow position: | chr3:67658601-67658453 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 489-698 |
| Cow position: | chr3:76522455-76522670 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 208 |
| Conread position: | 489-781 |
| Cow position: | chr3:17038726-17038424 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 158 |
| Conread position: | 489-869 |
| Cow position: | chr3:10579052-10579441 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 35 |
| Conread position: | 489-885 |
| Cow position: | chr3:53584892-53585296 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 34, 140 |
| Conread position: | 489-900 |
| Cow position: | chr3:7444966-7444542 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 113 |
| Conread position: | 490-769 |
| Cow position: | chr3:40770323-40770622 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 39, 210 |
| Conread position: | 490-885 |
| Cow position: | chr3:37346612-37346201 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 245 |
| Conread position: | 491-898 |
| Cow position: | chr3:59836176-59836599 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 44, 255 |
| Conread position: | 493-731 |
| Cow position: | chr3:80249894-80249636 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 30, 216 |
| Conread position: | 493-743 |
| Cow position: | chr3:38751976-38751707 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 265 |
| Conread position: | 493-798 |
| Cow position: | chr3:76670444-76670758 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 222 |
| Conread position: | 493-884 |
| Cow position: | chr3:4548514-4548909 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 73, 169 |
| Conread position: | 493-885 |
| Cow position: | chr3:14197820-14197411 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 493-885 |
| Cow position: | chr3:19976875-19976498 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 165 |
| Conread position: | 493-885 |
| Cow position: | chr3:83750145-83749743 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 493-887 |
| Cow position: | chr3:69032033-69032410 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 493-889 |
| Cow position: | chr3:55958666-55959031 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 375, 41 |
| Conread position: | 493-889 |
| Cow position: | chr3:64362684-64362283 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 495-879 |
| Cow position: | chr3:61504627-61505000 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 35, 105 |
| Conread position: | 495-898 |
| Cow position: | chr3:74215783-74216216 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 307 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 57, 273 |
| Conread position: | 502-754 |
| Cow position: | chr3:47486395-47486140 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 503-835 |
| Cow position: | chr3:25026778-25027122 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 505-884 |
| Cow position: | chr3:40866007-40865641 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 506-885 |
| Cow position: | chr3:48363336-48363708 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 511-900 |
| Cow position: | chr3:84104455-84104856 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 191 |
| Conread position: | 581-880 |
| Cow position: | chr3:28186686-28186991 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 200 |
| Conread position: | 635-885 |
| Cow position: | chr3:63758292-63758050 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 661-887 |
| Cow position: | chr3:17098665-17098889 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 663-900 |
| Cow position: | chr3:54882339-54882569 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 664-828 |
| Cow position: | chr3:57662797-57662953 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 664-869 |
| Cow position: | chr3:11604352-11604556 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 664-883 |
| Cow position: | chr3:33240304-33240091 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 664-896 |
| Cow position: | chr3:15386002-15386211 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 171, 31 |
| Conread position: | 664-900 |
| Cow position: | chr3:27629635-27629871 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 64, 212 |
| Conread position: | 667-895 |
| Cow position: | chr3:5707542-5707315 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 668-869 |
| Cow position: | chr3:80894183-80894382 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 676-865 |
| Cow position: | chr3:62765435-62765617 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 676-900 |
| Cow position: | chr3:48263438-48263220 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 683-867 |
| Cow position: | chr3:41555114-41555295 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 152, 100 |
| Conread position: | 683-869 |
| Cow position: | chr3:24155541-24155369 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 34 |
| Conread position: | 688-885 |
| Cow position: | chr3:67658136-67657940 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 54, 63 |
| Conread position: | 691-880 |
| Cow position: | chr3:70809398-70809592 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 90, 80 |
| Conread position: | 718-886 |
| Cow position: | chr3:35336257-35336092 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 153, 66 |
| Conread position: | 727-890 |
| Cow position: | chr3:5898590-5898427 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 107, 54 |
| Conread position: | 734-898 |
| Cow position: | chr3:71831858-71832019 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 50 |
| Conread position: | 739-898 |
| Cow position: | chr3:14833832-14833989 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 39 |
Show alignments to all cow chromosomes.