Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8017F08.3 |
| Conread position: | 1-297 |
| Cow position: | chr29:37618439-37618149 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 1-305 |
| Cow position: | chr29:25814704-25814999 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 2-209 |
| Cow position: | chr29:38978665-38978464 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 71 |
| Conread position: | 4-309 |
| Cow position: | chr29:17222545-17222243 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 4-310 |
| Cow position: | chr29:465269-465567 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 230, 48 |
| Conread position: | 4-310 |
| Cow position: | chr29:4480043-4480342 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 220, 25 |
| Conread position: | 4-310 |
| Cow position: | chr29:12680288-12679988 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 4-310 |
| Cow position: | chr29:16609878-16609571 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 220, 28 |
| Conread position: | 4-310 |
| Cow position: | chr29:27589053-27588755 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 174, 29 |
| Conread position: | 4-315 |
| Cow position: | chr29:24252363-24252063 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 220, 39 |
| Conread position: | 4-431 |
| Cow position: | chr29:5892977-5892567 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 5-220 |
| Cow position: | chr29:30548905-30548697 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 5-267 |
| Cow position: | chr29:34358849-34359107 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 219, 25 |
| Conread position: | 5-295 |
| Cow position: | chr29:29314519-29314810 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 5-310 |
| Cow position: | chr29:19762397-19762106 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 5-310 |
| Cow position: | chr29:29975168-29974874 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 5-310 |
| Cow position: | chr29:31929116-31928811 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 203, 25 |
| Conread position: | 5-310 |
| Cow position: | chr29:41530980-41530679 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 6-303 |
| Cow position: | chr29:29057304-29057018 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 251, 102 |
| Conread position: | 6-310 |
| Cow position: | chr29:14501727-14501424 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 7-209 |
| Cow position: | chr29:23825081-23825286 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 191 |
| Conread position: | 7-215 |
| Cow position: | chr29:20770471-20770272 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-297 |
| Cow position: | chr29:39111185-39111472 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 217, 28 |
| Conread position: | 7-309 |
| Cow position: | chr29:8926334-8926623 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-310 |
| Cow position: | chr29:22613554-22613256 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 176, 25 |
| Conread position: | 7-310 |
| Cow position: | chr29:23243751-23244050 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 217, 23 |
| Conread position: | 7-310 |
| Cow position: | chr29:25092233-25091942 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 223, 22 |
| Conread position: | 7-310 |
| Cow position: | chr29:40097089-40096790 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 7-310 |
| Cow position: | chr29:43099616-43099912 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 7-310 |
| Cow position: | chr29:45005500-45005793 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 8-175 |
| Cow position: | chr29:22734981-22735144 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 159, 90 |
| Conread position: | 8-310 |
| Cow position: | chr29:1325566-1325271 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 8-310 |
| Cow position: | chr29:34773609-34773904 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 51, 149 |
| Conread position: | 8-327 |
| Cow position: | chr29:9709824-9709511 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 9-310 |
| Cow position: | chr29:36530993-36530697 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 146 |
| Conread position: | 9-311 |
| Cow position: | chr29:28166097-28166384 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 10-303 |
| Cow position: | chr29:36217236-36216954 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 214, 20 |
| Conread position: | 11-301 |
| Cow position: | chr29:25737290-25737579 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 211, 143 |
| Conread position: | 11-301 |
| Cow position: | chr29:35501532-35501812 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 219, 18 |
| Conread position: | 11-303 |
| Cow position: | chr29:41112758-41113022 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 11-309 |
| Cow position: | chr29:4874757-4875062 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 11-310 |
| Cow position: | chr29:19949430-19949143 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 11-310 |
| Cow position: | chr29:32210948-32211226 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 12-308 |
| Cow position: | chr29:38582090-38581807 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 12-310 |
| Cow position: | chr29:29769230-29769521 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 12-311 |
| Cow position: | chr29:28196889-28197175 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 204, 11 |
| Conread position: | 13-303 |
| Cow position: | chr29:1557052-1556769 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 13-307 |
| Cow position: | chr29:10018699-10018407 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 14-309 |
| Cow position: | chr29:24624369-24624082 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 14-310 |
| Cow position: | chr29:40117691-40117402 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 197, 16 |
| Conread position: | 15-307 |
| Cow position: | chr29:26275729-26275450 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 77 |
| Conread position: | 15-310 |
| Cow position: | chr29:28195402-28195683 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 16-277 |
| Cow position: | chr29:4003010-4002759 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 17-308 |
| Cow position: | chr29:20903173-20903452 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 207, 13 |
| Conread position: | 18-310 |
| Cow position: | chr29:5186375-5186665 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 8, 138 |
| Conread position: | 23-310 |
| Cow position: | chr29:9912286-9912002 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 201, 9 |
| Conread position: | 24-310 |
| Cow position: | chr29:26778993-26778718 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 82, 97 |
| Conread position: | 25-310 |
| Cow position: | chr29:463543-463824 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 5 |
| Conread position: | 36-303 |
| Cow position: | chr29:4520435-4520172 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 188, 74 |
| Conread position: | 39-310 |
| Cow position: | chr29:23983859-23984129 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 185, 116 |
| Conread position: | 41-279 |
| Cow position: | chr29:27329986-27329753 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 173, 11 |
| Conread position: | 52-310 |
| Cow position: | chr29:27826603-27826355 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 47 |
| Conread position: | 62-310 |
| Cow position: | chr29:22714650-22714894 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 162, 67 |
| Conread position: | 66-310 |
| Cow position: | chr29:11562682-11562448 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 157, 95 |
| Conread position: | 67-307 |
| Cow position: | chr29:22162181-22162422 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 157, 96 |
| Conread position: | 67-309 |
| Cow position: | chr29:26615652-26615890 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 157, 88 |
| Conread position: | 67-310 |
| Cow position: | chr29:5098698-5098928 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 67-310 |
| Cow position: | chr29:10235066-10235296 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 179, 42 |
| Conread position: | 67-310 |
| Cow position: | chr29:17607486-17607250 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 108, 89 |
| Conread position: | 67-310 |
| Cow position: | chr29:44682036-44682267 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 68-303 |
| Cow position: | chr29:35292160-35291927 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 68-310 |
| Cow position: | chr29:15940563-15940803 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 156, 89 |
| Conread position: | 68-310 |
| Cow position: | chr29:43009017-43009251 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 156, 82 |
| Conread position: | 69-310 |
| Cow position: | chr29:22778110-22778348 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 161, 31 |
| Conread position: | 70-309 |
| Cow position: | chr29:24103476-24103714 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 114, 40 |
| Conread position: | 70-310 |
| Cow position: | chr29:9718707-9718939 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 154, 25 |
| Conread position: | 71-303 |
| Cow position: | chr29:2744203-2744435 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 153, 89 |
| Conread position: | 71-305 |
| Cow position: | chr29:31674697-31674465 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 153, 110 |
| Conread position: | 71-310 |
| Cow position: | chr29:86947-87188 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 153, 89 |
| Conread position: | 71-310 |
| Cow position: | chr29:43328708-43328472 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 109, 75 |
| Conread position: | 162-310 |
| Cow position: | chr29:21000622-21000473 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 170-309 |
| Cow position: | chr29:19125317-19125174 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 12, 27 |
Show alignments to all cow chromosomes.