Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8018F21.3 |
| Conread position: | 1-344 |
| Cow position: | chr17:22551836-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 159, 212 |
| Conread position: | 1-658 |
| Cow position: | chr17:22589842-22589182 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 211 |
| Conread position: | 1-679 |
| Cow position: | chr17:22499219-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 225 |
| Conread position: | 1-859 |
| Cow position: | chr17:22552928-22552067 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 222 |
| Conread position: | 1-865 |
| Cow position: | chr17:22552676-22551810 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 432 |
| Conread position: | 5-857 |
| Cow position: | chr17:22590174-22589319 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 168 |
| Conread position: | 5-858 |
| Cow position: | chr17:22552504-22551648 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 5-859 |
| Cow position: | chr17:22553092-22552235 (view UCSC Genome Browser custom track) |
| Alignm length: | 863 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 291 |
| Conread position: | 7-859 |
| Cow position: | chr17:22553174-22552319 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 206 |
| Conread position: | 9-752 |
| Cow position: | chr17:22452281-22451537 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 447 |
| Conread position: | 9-759 |
| Cow position: | chr17:22499295-22498542 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 163 |
| Conread position: | 9-841 |
| Cow position: | chr17:22499379-22498544 (view UCSC Genome Browser custom track) |
| Alignm length: | 837 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 364 |
| Conread position: | 9-846 |
| Cow position: | chr17:22552332-22551492 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 214 |
| Conread position: | 9-859 |
| Cow position: | chr17:22552584-22551731 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 170 |
| Conread position: | 9-864 |
| Cow position: | chr17:22590254-22589396 (view UCSC Genome Browser custom track) |
| Alignm length: | 863 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 10-690 |
| Cow position: | chr17:22552163-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 203 |
| Conread position: | 10-758 |
| Cow position: | chr17:22552247-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 287 |
| Conread position: | 10-847 |
| Cow position: | chr17:22590001-22589159 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 203 |
| Conread position: | 10-866 |
| Cow position: | chr17:22590085-22589227 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 203 |
| Conread position: | 49-598 |
| Cow position: | chr17:22499003-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 177 |
| Conread position: | 49-778 |
| Cow position: | chr17:22452409-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 143 |
| Conread position: | 55-841 |
| Cow position: | chr17:41440977-41440188 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 452 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 104, 172 |
| Conread position: | 55-841 |
| Cow position: | chr17:41441061-41440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 794 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 118 |
| Conread position: | 58-759 |
| Cow position: | chr17:22452316-22451612 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 67-841 |
| Cow position: | chr17:22499405-22498628 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 366 |
| Conread position: | 94-775 |
| Cow position: | chr17:22473267-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 276 |
| Conread position: | 175-627 |
| Cow position: | chr17:44467877-44468329 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 194-839 |
| Cow position: | chr17:22452513-22451868 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 183 |
| Conread position: | 209-865 |
| Cow position: | chr17:22473220-22473873 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 584, 43 |
| Conread position: | 222-859 |
| Cow position: | chr17:22452401-22451764 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 422 |
| Conread position: | 223-859 |
| Cow position: | chr17:22590289-22589653 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 565, 553 |
| Conread position: | 227-860 |
| Cow position: | chr17:22473319-22473953 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 603, 0 |
| Conread position: | 305-859 |
| Cow position: | chr17:22590291-22589737 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 331-730 |
| Cow position: | chr17:41441118-41440719 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 48 |
| Conread position: | 347-864 |
| Cow position: | chr17:22553167-22552650 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 83 |
| Conread position: | 385-859 |
| Cow position: | chr17:22590295-22589821 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-826 |
| Cow position: | chr17:22499477-22499063 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 34 |
| Conread position: | 407-859 |
| Cow position: | chr17:22499398-22498946 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 415-825 |
| Cow position: | chr17:41441118-41440708 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 231, 238 |
| Conread position: | 460-859 |
| Cow position: | chr17:22590304-22589905 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 244 |
| Conread position: | 499-841 |
| Cow position: | chr17:41441118-41440776 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 142, 135 |
Show alignments to all cow chromosomes.