Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8018F21.3 |
| Conread position: | 1-423 |
| Cow position: | chr19:20678380-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 160, 310 |
| Conread position: | 1-507 |
| Cow position: | chr19:20635456-20634950 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 303 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 123, 138 |
| Conread position: | 1-575 |
| Cow position: | chr19:43570215-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 429 |
| Conread position: | 1-753 |
| Cow position: | chr19:23649731-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 385 |
| Conread position: | 1-817 |
| Cow position: | chr19:14940249-14941068 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-817 |
| Cow position: | chr19:23614281-23615100 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 212 |
| Conread position: | 1-833 |
| Cow position: | chr19:20677876-20678711 (view UCSC Genome Browser custom track) |
| Alignm length: | 840 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 310 |
| Conread position: | 1-839 |
| Cow position: | chr19:23613441-23614282 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 136 |
| Conread position: | 1-841 |
| Cow position: | chr19:23613609-23614452 (view UCSC Genome Browser custom track) |
| Alignm length: | 846 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 212 |
| Conread position: | 1-846 |
| Cow position: | chr19:23649311-23650159 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 799 |
| Conread position: | 1-857 |
| Cow position: | chr19:14960214-14959373 (view UCSC Genome Browser custom track) |
| Alignm length: | 864 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 61 |
| Conread position: | 1-864 |
| Cow position: | chr19:23614197-23615063 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 296 |
| Conread position: | 1-867 |
| Cow position: | chr19:23596873-23597740 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 773 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 852, 0 |
| Conread position: | 4-455 |
| Cow position: | chr19:14948454-14948001 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 156, 54 |
| Conread position: | 4-740 |
| Cow position: | chr19:14940420-14941165 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 4-827 |
| Cow position: | chr19:43570453-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 5-499 |
| Cow position: | chr19:23614621-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 5-608 |
| Cow position: | chr19:14915974-14916561 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 367 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 24, 244 |
| Conread position: | 5-626 |
| Cow position: | chr19:23649819-23650443 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 381 |
| Conread position: | 5-670 |
| Cow position: | chr19:14959472-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 5-750 |
| Cow position: | chr19:14959556-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 5-840 |
| Cow position: | chr19:14959960-14959147 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 244 |
| Conread position: | 5-841 |
| Cow position: | chr19:20677796-20678635 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 167 |
| Conread position: | 5-841 |
| Cow position: | chr19:20677964-20678800 (view UCSC Genome Browser custom track) |
| Alignm length: | 846 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 5-846 |
| Cow position: | chr19:23649483-23650327 (view UCSC Genome Browser custom track) |
| Alignm length: | 846 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 810 |
| Conread position: | 5-859 |
| Cow position: | chr19:14960378-14959539 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 179 |
| Conread position: | 5-859 |
| Cow position: | chr19:23613361-23614218 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 546 |
| Conread position: | 5-859 |
| Cow position: | chr19:23613865-23614722 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 306 |
| Conread position: | 5-860 |
| Cow position: | chr19:23613529-23614387 (view UCSC Genome Browser custom track) |
| Alignm length: | 862 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 306 |
| Conread position: | 5-865 |
| Cow position: | chr19:23613697-23614559 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 7-785 |
| Cow position: | chr19:23649653-23650434 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 295 |
| Conread position: | 7-841 |
| Cow position: | chr19:23649569-23650406 (view UCSC Genome Browser custom track) |
| Alignm length: | 840 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 427 |
| Conread position: | 8-524 |
| Cow position: | chr19:14916063-14916561 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 155, 67 |
| Conread position: | 8-859 |
| Cow position: | chr19:23649402-23650256 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 546 |
| Conread position: | 8-860 |
| Cow position: | chr19:14940088-14940943 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 9-657 |
| Cow position: | chr19:23614457-23615108 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 204 |
| Conread position: | 9-838 |
| Cow position: | chr19:14959636-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 330 |
| Conread position: | 10-839 |
| Cow position: | chr19:14940174-14941006 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 163 |
| Conread position: | 10-846 |
| Cow position: | chr19:23613954-23614793 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 40 |
| Conread position: | 19-754 |
| Cow position: | chr19:14960448-14959714 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 298 |
| Conread position: | 49-833 |
| Cow position: | chr19:14959832-14959076 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 66-834 |
| Cow position: | chr19:20677436-20678208 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 30 |
| Conread position: | 73-542 |
| Cow position: | chr19:14948469-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 65 |
| Conread position: | 76-829 |
| Cow position: | chr19:14960475-14959723 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 96 |
| Conread position: | 76-859 |
| Cow position: | chr19:14939988-14940774 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 79-841 |
| Cow position: | chr19:14959649-14958900 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 79-857 |
| Cow position: | chr19:23613351-23614132 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 94-839 |
| Cow position: | chr19:20677633-20678381 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 121 |
| Conread position: | 94-846 |
| Cow position: | chr19:43570447-43569705 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 101-859 |
| Cow position: | chr19:20677307-20678065 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 451, 437 |
| Conread position: | 147-770 |
| Cow position: | chr19:20635646-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 82 |
| Conread position: | 159-864 |
| Cow position: | chr19:20677449-20678154 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 107 |
| Conread position: | 168-859 |
| Cow position: | chr19:23613359-23614050 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 110 |
| Conread position: | 172-859 |
| Cow position: | chr19:23649401-23650088 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 201 |
| Conread position: | 173-644 |
| Cow position: | chr19:14948450-14947979 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 50 |
| Conread position: | 209-859 |
| Cow position: | chr19:20635983-20635351 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 397 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 211-842 |
| Cow position: | chr19:20635663-20635032 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 104 |
| Conread position: | 214-776 |
| Cow position: | chr19:14916020-14916561 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 115 |
| Conread position: | 215-703 |
| Cow position: | chr19:14948492-14948005 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 92 |
| Conread position: | 223-864 |
| Cow position: | chr19:14959587-14958962 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 151 |
| Conread position: | 226-859 |
| Cow position: | chr19:23596849-23597479 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 183 |
| Conread position: | 241-864 |
| Cow position: | chr19:23649302-23649925 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 34 |
| Conread position: | 243-841 |
| Cow position: | chr19:23613350-23613948 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 545, 533 |
| Conread position: | 307-861 |
| Cow position: | chr19:14960409-14959857 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 485, 256 |
| Conread position: | 316-859 |
| Cow position: | chr19:43570391-43569858 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 481, 113 |
| Conread position: | 327-864 |
| Cow position: | chr19:23613350-23613887 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 395 |
| Conread position: | 338-864 |
| Cow position: | chr19:43570452-43569937 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 346-839 |
| Cow position: | chr19:20677303-20677793 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 58 |
| Conread position: | 376-859 |
| Cow position: | chr19:23613315-23613798 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 385-859 |
| Cow position: | chr19:23596840-23597311 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 192 |
| Conread position: | 391-865 |
| Cow position: | chr19:14948484-14948012 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 402-857 |
| Cow position: | chr19:14915955-14916406 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 404-859 |
| Cow position: | chr19:23649297-23649752 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 305 |
| Conread position: | 406-839 |
| Cow position: | chr19:20635720-20635287 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 433-857 |
| Cow position: | chr19:23613288-23613712 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 343 |
| Conread position: | 465-860 |
| Cow position: | chr19:23596835-23597228 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 8, 201 |
| Conread position: | 564-841 |
| Cow position: | chr19:23649289-23649566 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-839 |
| Cow position: | chr19:14960475-14960213 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 640-841 |
| Cow position: | chr19:14939968-14940168 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
Show alignments to all cow chromosomes.