Cow genome map

Conread name: Ss1.1-Pig4-TMW8018F21.3

Conread position: 1-312
Cow position: chr22:12458097-12457783 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 198
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 35, 49

Conread position: 1-335
Cow position: chr22:11641117-11641455 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 220
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 28, 42

Conread position: 1-594
Cow position: chr22:12385493-12384897 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 44

Conread position: 1-744
Cow position: chr22:12431313-12430567 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 372

Conread position: 1-829
Cow position: chr22:12399585-12398754 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 211

Conread position: 1-841
Cow position: chr22:12432405-12431562 (view UCSC Genome Browser custom track)
Alignm length: 849
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 136

Conread position: 1-841
Cow position: chr22:14430073-14430916 (view UCSC Genome Browser custom track)
Alignm length: 850
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 139

Conread position: 1-859
Cow position: chr22:12432069-12431208 (view UCSC Genome Browser custom track)
Alignm length: 865
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 35

Conread position: 1-859
Cow position: chr22:12476214-12475353 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 590
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 38

Conread position: 1-859
Cow position: chr22:12499045-12499906 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 585
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 38

Conread position: 1-863
Cow position: chr22:12432153-12431287 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 720

Conread position: 1-864
Cow position: chr22:12431733-12430867 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 639

Conread position: 5-414
Cow position: chr22:12418848-12418434 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 260
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 154, 375

Conread position: 5-501
Cow position: chr22:12399245-12398746 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 306

Conread position: 5-504
Cow position: chr22:46654360-46654864 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 307
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 108, 134

Conread position: 5-536
Cow position: chr22:14468238-14468762 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 338
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 34

Conread position: 5-753
Cow position: chr22:12458513-12457762 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 167

Conread position: 5-757
Cow position: chr22:12476042-12475287 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 168

Conread position: 5-767
Cow position: chr22:14430161-14430926 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 37

Conread position: 5-786
Cow position: chr22:12431561-12430778 (view UCSC Genome Browser custom track)
Alignm length: 787
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 145

Conread position: 5-827
Cow position: chr22:11640617-11641442 (view UCSC Genome Browser custom track)
Alignm length: 831
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 70

Conread position: 5-829
Cow position: chr22:12431645-12430818 (view UCSC Genome Browser custom track)
Alignm length: 837
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 31

Conread position: 5-838
Cow position: chr22:14429825-14430661 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 286

Conread position: 5-839
Cow position: chr22:12399665-12398828 (view UCSC Genome Browser custom track)
Alignm length: 841
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 20

Conread position: 5-839
Cow position: chr22:14429993-14430830 (view UCSC Genome Browser custom track)
Alignm length: 845
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 205

Conread position: 5-841
Cow position: chr22:12476126-12475287 (view UCSC Genome Browser custom track)
Alignm length: 842
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 777

Conread position: 5-841
Cow position: chr22:12499133-12499972 (view UCSC Genome Browser custom track)
Alignm length: 842
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 114

Conread position: 5-859
Cow position: chr22:12432485-12431628 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 132

Conread position: 5-859
Cow position: chr22:12476378-12475521 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 185

Conread position: 5-864
Cow position: chr22:14429657-14430519 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 553
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 138

Conread position: 5-865
Cow position: chr22:12498965-12499827 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 115

Conread position: 7-451
Cow position: chr22:11666460-11666907 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 381

Conread position: 7-584
Cow position: chr22:11701114-11701694 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 191

Conread position: 7-756
Cow position: chr22:11640703-11641455 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 143

Conread position: 8-595
Cow position: chr22:11640872-11641463 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 132

Conread position: 9-757
Cow position: chr22:12499221-12499972 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 164

Conread position: 9-839
Cow position: chr22:12498885-12499718 (view UCSC Genome Browser custom track)
Alignm length: 837
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 181

Conread position: 9-846
Cow position: chr22:12399829-12398989 (view UCSC Genome Browser custom track)
Alignm length: 845
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 198

Conread position: 10-451
Cow position: chr22:12418927-12418483 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 275
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 151, 163

Conread position: 10-844
Cow position: chr22:14441892-14442726 (view UCSC Genome Browser custom track)
Alignm length: 845
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 138

Conread position: 10-884
Cow position: chr22:12431808-12430932 (view UCSC Genome Browser custom track)
Alignm length: 884
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 162

Conread position: 14-804
Cow position: chr22:14467995-14468775 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 176

Conread position: 15-865
Cow position: chr22:12476284-12475432 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 105

Conread position: 42-833
Cow position: chr22:12385704-12384908 (view UCSC Genome Browser custom track)
Alignm length: 800
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 34

Conread position: 43-841
Cow position: chr22:46653978-46654779 (view UCSC Genome Browser custom track)
Alignm length: 805
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 271

Conread position: 43-865
Cow position: chr22:12399711-12398887 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 183

Conread position: 56-704
Cow position: chr22:14430380-14431024 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 64

Conread position: 56-785
Cow position: chr22:14467953-14468684 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 20

Conread position: 56-785
Cow position: chr22:46654075-46654807 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 87

Conread position: 58-864
Cow position: chr22:12431424-12430615 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 115

Conread position: 68-834
Cow position: chr22:12458534-12457765 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 151

Conread position: 70-762
Cow position: chr22:46654173-46654869 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 75

Conread position: 80-859
Cow position: chr22:12399920-12399144 (view UCSC Genome Browser custom track)
Alignm length: 785
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 40

Conread position: 87-588
Cow position: chr22:11666456-11666960 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 33

Conread position: 87-656
Cow position: chr22:11701110-11701682 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 33

Conread position: 94-859
Cow position: chr22:12458592-12457824 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 620

Conread position: 98-839
Cow position: chr22:11640626-11641370 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 45

Conread position: 101-839
Cow position: chr22:14429504-14430242 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 43

Conread position: 109-750
Cow position: chr22:12419077-12418434 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 321

Conread position: 136-865
Cow position: chr22:12458634-12457902 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 573

Conread position: 138-859
Cow position: chr22:12419320-12418579 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 35

Conread position: 139-866
Cow position: chr22:12385691-12384960 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 242

Conread position: 166-864
Cow position: chr22:12544588-12545286 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 424
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 244, 273

Conread position: 209-858
Cow position: chr22:14441926-14442575 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 388
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 85, 75

Conread position: 213-859
Cow position: chr22:12458638-12457992 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 217

Conread position: 215-705
Cow position: chr22:12545383-12545856 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 307
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 7, 65

Conread position: 218-827
Cow position: chr22:12498845-12499454 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 212

Conread position: 222-859
Cow position: chr22:12476410-12475773 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 208

Conread position: 222-859
Cow position: chr22:12498933-12499570 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 577, 557

Conread position: 222-864
Cow position: chr22:14467954-14468596 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 158

Conread position: 223-752
Cow position: chr22:11701165-11701694 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 154

Conread position: 223-859
Cow position: chr22:11640670-11641306 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 69

Conread position: 228-907
Cow position: chr22:14468044-14468726 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 311

Conread position: 252-776
Cow position: chr22:12419018-12418494 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 131

Conread position: 252-837
Cow position: chr22:11701110-11701695 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 40

Conread position: 253-846
Cow position: chr22:11640616-11641209 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 72

Conread position: 322-841
Cow position: chr22:14429641-14430160 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 322-859
Cow position: chr22:12545641-12546172 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 325
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 144, 124

Conread position: 323-861
Cow position: chr22:46653926-46654465 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 11

Conread position: 324-865
Cow position: chr22:12432499-12431958 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 146

Conread position: 327-857
Cow position: chr22:14441874-14442406 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 324
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 7, 410

Conread position: 336-857
Cow position: chr22:11640615-11641136 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 72

Conread position: 337-883
Cow position: chr22:12458598-12458052 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 343-840
Cow position: chr22:11666463-11666960 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 118

Conread position: 343-841
Cow position: chr22:11701117-11701615 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 119

Conread position: 347-846
Cow position: chr22:12400070-12399577 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 0

Conread position: 373-829
Cow position: chr22:12498832-12499288 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 386-864
Cow position: chr22:12419321-12418826 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 290
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 291, 0

Conread position: 389-829
Cow position: chr22:12476411-12475971 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 390-753
Cow position: chr22:12544476-12544839 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 229
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 85, 73

Conread position: 394-864
Cow position: chr22:14429548-14430015 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 302
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 42, 36

Conread position: 395-859
Cow position: chr22:12476488-12476025 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 10

Conread position: 421-841
Cow position: chr22:11666457-11666877 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 275
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 114, 120

Conread position: 421-859
Cow position: chr22:11701111-11701549 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 273
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 114, 120

Conread position: 421-878
Cow position: chr22:11640616-11641072 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 71

Conread position: 422-862
Cow position: chr22:12498797-12499237 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 24

Conread position: 438-864
Cow position: chr22:46653956-46654382 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 265
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 105, 101

Conread position: 509-859
Cow position: chr22:11666461-11666811 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 223
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 155, 162

Conread position: 552-798
Cow position: chr22:12419323-12419077 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 162
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 557-864
Cow position: chr22:12476411-12476104 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 191
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 557-864
Cow position: chr22:12498848-12499155 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 196
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 35, 39

Show alignments to all cow chromosomes.