Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8018F21.3 |
| Conread position: | 1-344 |
| Cow position: | chr23:24546987-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-483 |
| Cow position: | chr23:25698565-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 111, 119 |
| Conread position: | 1-540 |
| Cow position: | chr23:24535954-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 333 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 90, 94 |
| Conread position: | 1-681 |
| Cow position: | chr23:24639391-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 212 |
| Conread position: | 1-841 |
| Cow position: | chr23:25626037-25626877 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 3-586 |
| Cow position: | chr23:25660160-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 226 |
| Conread position: | 4-435 |
| Cow position: | chr23:24626318-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 209 |
| Conread position: | 4-753 |
| Cow position: | chr23:24560880-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 91 |
| Conread position: | 5-456 |
| Cow position: | chr23:24654044-24654492 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 158, 360 |
| Conread position: | 5-666 |
| Cow position: | chr23:24547319-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 167 |
| Conread position: | 5-833 |
| Cow position: | chr23:25626209-25627037 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 227 |
| Conread position: | 6-859 |
| Cow position: | chr23:25625958-25626811 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 630 |
| Conread position: | 7-864 |
| Cow position: | chr23:24639229-24640090 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 170 |
| Conread position: | 10-405 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 10-467 |
| Cow position: | chr23:24639652-24640112 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 151, 163 |
| Conread position: | 10-753 |
| Cow position: | chr23:25626298-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 288 |
| Conread position: | 73-519 |
| Cow position: | chr23:24626303-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 73-658 |
| Cow position: | chr23:25660146-25660734 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 100 |
| Conread position: | 78-732 |
| Cow position: | chr23:24522815-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 17 |
| Conread position: | 81-707 |
| Cow position: | chr23:24536042-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 92 |
| Conread position: | 88-864 |
| Cow position: | chr23:24639226-24640005 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 94-511 |
| Cow position: | chr23:25724111-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 67, 78 |
| Conread position: | 99-539 |
| Cow position: | chr23:24654054-24654491 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 363 |
| Conread position: | 99-651 |
| Cow position: | chr23:25698635-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 105-603 |
| Cow position: | chr23:24626254-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 160-833 |
| Cow position: | chr23:24560804-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 173-859 |
| Cow position: | chr23:24560876-24560190 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 615, 606 |
| Conread position: | 174-866 |
| Cow position: | chr23:24547315-24546622 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 175-573 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 180-735 |
| Cow position: | chr23:25698635-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 180-877 |
| Cow position: | chr23:24639153-24639848 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 181-752 |
| Cow position: | chr23:24536023-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 127 |
| Conread position: | 190-790 |
| Cow position: | chr23:24522786-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 181 |
| Conread position: | 213-687 |
| Cow position: | chr23:24626278-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 222-815 |
| Cow position: | chr23:25698677-25698084 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 82 |
| Conread position: | 223-754 |
| Cow position: | chr23:25660215-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 51 |
| Conread position: | 230-864 |
| Cow position: | chr23:24522828-24522199 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 41 |
| Conread position: | 237-829 |
| Cow position: | chr23:25660145-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 243-859 |
| Cow position: | chr23:24560890-24560274 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 549, 536 |
| Conread position: | 243-872 |
| Cow position: | chr23:24547330-24546702 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 129 |
| Conread position: | 247-613 |
| Cow position: | chr23:24654037-24654403 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 265-656 |
| Cow position: | chr23:25724105-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 266-841 |
| Cow position: | chr23:24536106-24535531 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 322-771 |
| Cow position: | chr23:24626303-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 0 |
| Conread position: | 323-865 |
| Cow position: | chr23:24547334-24546794 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 471 |
| Conread position: | 330-865 |
| Cow position: | chr23:24522812-24522282 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 25 |
| Conread position: | 334-656 |
| Cow position: | chr23:24521971-24521654 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 200, 245 |
| Conread position: | 337-788 |
| Cow position: | chr23:24654043-24654488 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 361 |
| Conread position: | 341-834 |
| Cow position: | chr23:25660165-25660658 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 221 |
| Conread position: | 343-794 |
| Cow position: | chr23:24522117-24521679 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 124, 110 |
| Conread position: | 347-734 |
| Cow position: | chr23:25724107-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-826 |
| Cow position: | chr23:24626279-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 394 |
| Conread position: | 389-864 |
| Cow position: | chr23:25626008-25626483 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 390-833 |
| Cow position: | chr23:25698677-25698234 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 398-841 |
| Cow position: | chr23:24560903-24560460 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 381 |
| Conread position: | 405-841 |
| Cow position: | chr23:25660145-25660581 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 374 |
| Conread position: | 423-865 |
| Cow position: | chr23:25698797-25698370 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 427-825 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 465-863 |
| Cow position: | chr23:24626278-24626677 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 466-826 |
| Cow position: | chr23:25698685-25698325 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 466-865 |
| Cow position: | chr23:25626001-25626399 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 345 |
| Conread position: | 467-859 |
| Cow position: | chr23:24626208-24626588 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 96, 36 |
| Conread position: | 494-860 |
| Cow position: | chr23:24536046-24535680 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 180 |
| Conread position: | 505-827 |
| Cow position: | chr23:24654043-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 274 |
| Conread position: | 516-839 |
| Cow position: | chr23:25724106-25723783 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 287 |
| Conread position: | 559-859 |
| Cow position: | chr23:24560910-24560610 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 233, 217 |
| Conread position: | 563-841 |
| Cow position: | chr23:25724143-25723865 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 588-859 |
| Cow position: | chr23:24654042-24654313 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 204, 191 |
Show alignments to all cow chromosomes.