Cow genome map

Conread name: Ss1.1-Pig4-TMW8018F21.3

Conread position: 1-328
Cow position:
Alignm length: 332
Alignm identity: 220
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 159, 210

Conread position: 1-404
Cow position:
Alignm length: 407
Alignm identity: 252
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 160, 0

Conread position: 1-450
Cow position:
Alignm length: 456
Alignm identity: 292
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 159, 196

Conread position: 1-696
Cow position:
Alignm length: 702
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 42

Conread position: 1-827
Cow position:
Alignm length: 840
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 148

Conread position: 1-833
Cow position:
Alignm length: 839
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 38

Conread position: 1-863
Cow position:
Alignm length: 871
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 171

Conread position: 2-802
Cow position:
Alignm length: 807
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 170

Conread position: 4-497
Cow position:
Alignm length: 499
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 170

Conread position: 4-754
Cow position:
Alignm length: 765
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 91

Conread position: 5-249
Cow position:
Alignm length: 249
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 158, 221

Conread position: 5-480
Cow position:
Alignm length: 482
Alignm identity: 290
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 156, 208

Conread position: 5-488
Cow position:
Alignm length: 488
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 132

Conread position: 5-672
Cow position:
Alignm length: 671
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 5-673
Cow position:
Alignm length: 682
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 113

Conread position: 5-752
Cow position:
Alignm length: 753
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 108

Conread position: 5-806
Cow position:
Alignm length: 810
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 20

Conread position: 5-839
Cow position:
Alignm length: 842
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 208

Conread position: 5-841
Cow position:
Alignm length: 844
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 167

Conread position: 7-826
Cow position:
Alignm length: 827
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 7-865
Cow position:
Alignm length: 864
Alignm identity: 600
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 136

Conread position: 7-900
Cow position:
Alignm length: 900
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 8-785
Cow position:
Alignm length: 785
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 164

Conread position: 9-837
Cow position:
Alignm length: 834
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 777

Conread position: 10-826
Cow position:
Alignm length: 822
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 166

Conread position: 10-841
Cow position:
Alignm length: 840
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 162

Conread position: 10-860
Cow position:
Alignm length: 865
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 95

Conread position: 14-806
Cow position:
Alignm length: 796
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 14-900
Cow position:
Alignm length: 892
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 199

Conread position: 19-865
Cow position:
Alignm length: 861
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 176

Conread position: 49-572
Cow position:
Alignm length: 527
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 49-582
Cow position:
Alignm length: 536
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 108

Conread position: 49-668
Cow position:
Alignm length: 624
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 164

Conread position: 49-779
Cow position:
Alignm length: 739
Alignm identity: 425
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 111, 123

Conread position: 49-781
Cow position:
Alignm length: 738
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 49-785
Cow position:
Alignm length: 744
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 123

Conread position: 49-826
Cow position:
Alignm length: 781
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 154

Conread position: 49-864
Cow position:
Alignm length: 820
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 167

Conread position: 58-394
Cow position:
Alignm length: 341
Alignm identity: 215
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 103, 251

Conread position: 58-631
Cow position:
Alignm length: 582
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 17

Conread position: 62-595
Cow position:
Alignm length: 537
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 11

Conread position: 69-875
Cow position:
Alignm length: 814
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 150

Conread position: 70-841
Cow position:
Alignm length: 780
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 102

Conread position: 71-695
Cow position:
Alignm length: 633
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 110

Conread position: 71-859
Cow position:
Alignm length: 802
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 101

Conread position: 72-785
Cow position:
Alignm length: 719
Alignm identity: 435
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 128, 95

Conread position: 74-834
Cow position:
Alignm length: 774
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 99

Conread position: 76-666
Cow position:
Alignm length: 596
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 97

Conread position: 79-790
Cow position:
Alignm length: 716
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 94

Conread position: 80-860
Cow position:
Alignm length: 784
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 85-841
Cow position:
Alignm length: 765
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 140

Conread position: 94-779
Cow position:
Alignm length: 693
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 79

Conread position: 103-542
Cow position:
Alignm length: 442
Alignm identity: 263
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 280, 57

Conread position: 103-740
Cow position:
Alignm length: 646
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 26

Conread position: 130-611
Cow position:
Alignm length: 499
Alignm identity: 309
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 32, 252

Conread position: 142-837
Cow position:
Alignm length: 706
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 70

Conread position: 160-483
Cow position:
Alignm length: 328
Alignm identity: 219
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 9

Conread position: 169-573
Cow position:
Alignm length: 408
Alignm identity: 260
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 93, 100

Conread position: 177-740
Cow position:
Alignm length: 565
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 546, 551

Conread position: 180-785
Cow position:
Alignm length: 613
Alignm identity: 379
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 146, 98

Conread position: 181-656
Cow position:
Alignm length: 476
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 182-626
Cow position:
Alignm length: 450
Alignm identity: 274
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 109, 56

Conread position: 202-864
Cow position:
Alignm length: 669
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 21

Conread position: 205-841
Cow position:
Alignm length: 637
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 207-832
Cow position:
Alignm length: 628
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 513, 509

Conread position: 220-779
Cow position:
Alignm length: 565
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 9

Conread position: 220-878
Cow position:
Alignm length: 660
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 577, 559

Conread position: 222-670
Cow position:
Alignm length: 451
Alignm identity: 285
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 80, 64

Conread position: 223-859
Cow position:
Alignm length: 640
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 498, 503

Conread position: 223-871
Cow position:
Alignm length: 654
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 24

Conread position: 223-872
Cow position:
Alignm length: 650
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 627, 0

Conread position: 225-841
Cow position:
Alignm length: 619
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 265

Conread position: 227-830
Cow position:
Alignm length: 627
Alignm identity: 387
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 81, 75

Conread position: 233-859
Cow position:
Alignm length: 630
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 559, 546

Conread position: 235-827
Cow position:
Alignm length: 595
Alignm identity: 338
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 111, 129

Conread position: 241-834
Cow position:
Alignm length: 597
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 166

Conread position: 241-865
Cow position:
Alignm length: 628
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 133

Conread position: 243-568
Cow position:
Alignm length: 328
Alignm identity: 210
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 19, 23

Conread position: 243-656
Cow position:
Alignm length: 416
Alignm identity: 265
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 118, 134

Conread position: 250-703
Cow position:
Alignm length: 455
Alignm identity: 283
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 308, 300

Conread position: 251-785
Cow position:
Alignm length: 537
Alignm identity: 307
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 16

Conread position: 257-862
Cow position:
Alignm length: 608
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 261-824
Cow position:
Alignm length: 566
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 16

Conread position: 264-757
Cow position:
Alignm length: 494
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 271-839
Cow position:
Alignm length: 572
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 33

Conread position: 304-628
Cow position:
Alignm length: 326
Alignm identity: 209
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 130, 48

Conread position: 316-787
Cow position:
Alignm length: 493
Alignm identity: 311
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 218, 365

Conread position: 316-844
Cow position:
Alignm length: 533
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 68

Conread position: 317-596
Cow position:
Alignm length: 280
Alignm identity: 175
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 318-859
Cow position:
Alignm length: 545
Alignm identity: 346
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 251, 21

Conread position: 322-839
Cow position:
Alignm length: 521
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 387, 397

Conread position: 323-682
Cow position:
Alignm length: 361
Alignm identity: 240
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 191, 197

Conread position: 325-785
Cow position:
Alignm length: 462
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 5

Conread position: 326-864
Cow position:
Alignm length: 541
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 48

Conread position: 330-825
Cow position:
Alignm length: 499
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 41

Conread position: 331-660
Cow position:
Alignm length: 331
Alignm identity: 221
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 183, 190

Conread position: 331-841
Cow position:
Alignm length: 512
Alignm identity: 308
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 456, 472

Conread position: 332-789
Cow position:
Alignm length: 461
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 40

Conread position: 343-841
Cow position:
Alignm length: 501
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 87

Conread position: 346-656
Cow position:
Alignm length: 311
Alignm identity: 201
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 109, 0

Conread position: 347-864
Cow position:
Alignm length: 521
Alignm identity: 323
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 105, 115

Conread position: 351-864
Cow position:
Alignm length: 516
Alignm identity: 318
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 91, 122

Conread position: 358-828
Cow position:
Alignm length: 475
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 183

Conread position: 363-859
Cow position:
Alignm length: 500
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 40

Conread position: 382-610
Cow position:
Alignm length: 229
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 193, 0

Conread position: 382-707
Cow position:
Alignm length: 329
Alignm identity: 224
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 135, 0

Conread position: 385-827
Cow position:
Alignm length: 449
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 82

Conread position: 395-786
Cow position:
Alignm length: 392
Alignm identity: 248
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 10, 0

Conread position: 395-825
Cow position:
Alignm length: 432
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 13

Conread position: 402-859
Cow position:
Alignm length: 459
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 373

Conread position: 408-865
Cow position:
Alignm length: 463
Alignm identity: 284
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 71, 42

Conread position: 409-859
Cow position:
Alignm length: 453
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 192

Conread position: 411-741
Cow position:
Alignm length: 332
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 193

Conread position: 412-644
Cow position:
Alignm length: 234
Alignm identity: 170
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 206, 228

Conread position: 412-788
Cow position:
Alignm length: 378
Alignm identity: 247
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 310, 293

Conread position: 412-857
Cow position:
Alignm length: 447
Alignm identity: 276
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 297, 307

Conread position: 413-656
Cow position:
Alignm length: 245
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 129, 137

Conread position: 423-703
Cow position:
Alignm length: 281
Alignm identity: 188
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 11, 0

Conread position: 428-861
Cow position:
Alignm length: 438
Alignm identity: 264
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 89, 68

Conread position: 439-864
Cow position:
Alignm length: 427
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 46

Conread position: 454-776
Cow position:
Alignm length: 328
Alignm identity: 224
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 144, 260

Conread position: 464-839
Cow position:
Alignm length: 377
Alignm identity: 244
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 279, 113

Conread position: 465-700
Cow position:
Alignm length: 236
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 475-812
Cow position:
Alignm length: 339
Alignm identity: 218
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 207, 213

Conread position: 479-839
Cow position:
Alignm length: 362
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 209

Conread position: 490-864
Cow position:
Alignm length: 376
Alignm identity: 242
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 349, 363

Conread position: 496-840
Cow position:
Alignm length: 347
Alignm identity: 228
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 218, 22

Conread position: 496-865
Cow position:
Alignm length: 372
Alignm identity: 247
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 310, 303

Conread position: 516-839
Cow position:
Alignm length: 325
Alignm identity: 210
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 46, 54

Conread position: 517-735
Cow position:
Alignm length: 221
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 141, 106

Conread position: 563-789
Cow position:
Alignm length: 227
Alignm identity: 159
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 573-859
Cow position:
Alignm length: 290
Alignm identity: 190
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 152, 137

Conread position: 579-865
Cow position:
Alignm length: 288
Alignm identity: 186
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 263, 274

Conread position: 601-841
Cow position:
Alignm length: 243
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 112

Conread position: 665-846
Cow position:
Alignm length: 184
Alignm identity: 135
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 63, 57

Show alignments to all cow chromosomes.