Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8018F21.3 |
| Conread position: | 1-367 |
| Cow position: | chr28:33210234-33210604 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 160, 171 |
| Conread position: | 1-540 |
| Cow position: | chr28:9290178-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 160, 24 |
| Conread position: | 1-707 |
| Cow position: | chr28:9252941-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 217 |
| Conread position: | 1-825 |
| Cow position: | chr28:11334047-11333220 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 1-858 |
| Cow position: | chr28:7758010-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 2-832 |
| Cow position: | chr28:9298908-9299721 (view UCSC Genome Browser custom track) |
| Alignm length: | 837 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 86 |
| Conread position: | 5-740 |
| Cow position: | chr28:7757594-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 90 |
| Conread position: | 5-747 |
| Cow position: | chr28:7758182-7758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 154 |
| Conread position: | 5-866 |
| Cow position: | chr28:7757678-7758525 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 5-886 |
| Cow position: | chr28:7757762-7758631 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 208 |
| Conread position: | 7-528 |
| Cow position: | chr28:11333705-11333181 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 317 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 153, 165 |
| Conread position: | 7-703 |
| Cow position: | chr28:34695840-34696539 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 113 |
| Conread position: | 8-826 |
| Cow position: | chr28:7757513-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 164 |
| Conread position: | 8-834 |
| Cow position: | chr28:9298747-9299559 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 67 |
| Conread position: | 8-841 |
| Cow position: | chr28:7757429-7758265 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 87 |
| Conread position: | 10-859 |
| Cow position: | chr28:9298666-9299500 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 15-644 |
| Cow position: | chr28:9253039-9253672 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 198 |
| Conread position: | 25-622 |
| Cow position: | chr28:9290119-9290712 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 8 |
| Conread position: | 43-453 |
| Cow position: | chr28:11333585-11333171 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 150, 122 |
| Conread position: | 43-753 |
| Cow position: | chr28:9252898-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 48-859 |
| Cow position: | chr28:9289809-9290613 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 49-612 |
| Cow position: | chr28:11333747-11333181 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 360 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 112, 123 |
| Conread position: | 49-697 |
| Cow position: | chr28:11333831-11333180 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 391 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 114, 331 |
| Conread position: | 52-841 |
| Cow position: | chr28:9252741-9253532 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 153 |
| Conread position: | 57-702 |
| Cow position: | chr28:9290066-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 58-488 |
| Cow position: | chr28:34696143-34696576 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 105, 248 |
| Conread position: | 58-632 |
| Cow position: | chr28:34695975-34696552 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 115 |
| Conread position: | 58-794 |
| Cow position: | chr28:11333906-11333167 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 114 |
| Conread position: | 70-347 |
| Cow position: | chr28:7810666-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 90, 102 |
| Conread position: | 73-780 |
| Cow position: | chr28:9289912-9290618 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 98-866 |
| Cow position: | chr28:7757351-7758121 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 115 |
| Conread position: | 99-767 |
| Cow position: | chr28:7810284-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 73 |
| Conread position: | 100-626 |
| Cow position: | chr28:34673376-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 325 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 133-757 |
| Cow position: | chr28:9290058-9290679 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 141-859 |
| Cow position: | chr28:9252747-9253466 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 146-828 |
| Cow position: | chr28:11334154-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 152-900 |
| Cow position: | chr28:7757247-7757988 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 162-588 |
| Cow position: | chr28:33210231-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 271 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 194, 7 |
| Conread position: | 168-707 |
| Cow position: | chr28:34673363-34673902 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 172-874 |
| Cow position: | chr28:11334209-11333506 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 688, 0 |
| Conread position: | 180-841 |
| Cow position: | chr28:7810284-7810936 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 213-721 |
| Cow position: | chr28:34679589-34679091 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 327 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 263, 36 |
| Conread position: | 223-841 |
| Cow position: | chr28:34695891-34696509 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 146 |
| Conread position: | 234-827 |
| Cow position: | chr28:9253009-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 59 |
| Conread position: | 239-630 |
| Cow position: | chr28:33210222-33210615 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 218 |
| Conread position: | 242-785 |
| Cow position: | chr28:34673353-34673896 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 335 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 244-785 |
| Cow position: | chr28:34695996-34696537 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 259-841 |
| Cow position: | chr28:34695843-34696425 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 319-867 |
| Cow position: | chr28:11334146-11333599 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 503, 496 |
| Conread position: | 330-729 |
| Cow position: | chr28:33210230-33210630 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 334-864 |
| Cow position: | chr28:9252775-9253303 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 117 |
| Conread position: | 337-841 |
| Cow position: | chr28:34673364-34673868 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 314 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 117, 131 |
| Conread position: | 339-864 |
| Cow position: | chr28:9298328-9298849 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 334 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 165, 149 |
| Conread position: | 347-865 |
| Cow position: | chr28:7810283-7810792 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 254 |
| Conread position: | 359-859 |
| Cow position: | chr28:7757117-7757611 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 310 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 267, 204 |
| Conread position: | 391-864 |
| Cow position: | chr28:11334242-11333769 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 464, 457 |
| Conread position: | 392-841 |
| Cow position: | chr28:34695724-34696173 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 262, 239 |
| Conread position: | 408-785 |
| Cow position: | chr28:34679562-34679184 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 16 |
| Conread position: | 408-847 |
| Cow position: | chr28:33210223-33210664 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 406 |
| Conread position: | 410-790 |
| Cow position: | chr28:34673353-34673732 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 127, 139 |
| Conread position: | 472-804 |
| Cow position: | chr28:7809808-7810136 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 230, 235 |
| Conread position: | 474-860 |
| Cow position: | chr28:7810251-7810619 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 476-846 |
| Cow position: | chr28:34695724-34696094 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 264, 256 |
| Conread position: | 551-827 |
| Cow position: | chr28:7810244-7810511 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 162, 41 |
| Conread position: | 580-859 |
| Cow position: | chr28:33210228-33210507 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 219, 228 |
| Conread position: | 635-834 |
| Cow position: | chr28:34679587-34679390 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.