Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8018F21.3 |
| Conread position: | 1-419 |
| Cow position: | chr3:68027350-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 1-753 |
| Cow position: | chr3:62722319-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 172 |
| Conread position: | 5-587 |
| Cow position: | chr3:68027186-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 168 |
| Conread position: | 5-864 |
| Cow position: | chr3:62742372-62743208 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 269 |
| Conread position: | 5-867 |
| Cow position: | chr3:62742540-62743379 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 101 |
| Conread position: | 7-844 |
| Cow position: | chr3:62742707-62743523 (view UCSC Genome Browser custom track) |
| Alignm length: | 843 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 42 |
| Conread position: | 8-581 |
| Cow position: | chr3:68045782-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 560 |
| Conread position: | 9-678 |
| Cow position: | chr3:68045699-68046369 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 163 |
| Conread position: | 15-521 |
| Cow position: | chr3:62743033-62743534 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 148, 78 |
| Conread position: | 49-630 |
| Cow position: | chr3:68027146-68027730 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 123 |
| Conread position: | 57-722 |
| Cow position: | chr3:68027070-68027738 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 115 |
| Conread position: | 81-826 |
| Cow position: | chr3:68045603-68046351 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 98 |
| Conread position: | 131-864 |
| Cow position: | chr3:68026976-68027712 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 131-864 |
| Cow position: | chr3:68045569-68046305 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 127 |
| Conread position: | 133-839 |
| Cow position: | chr3:62722355-62721646 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 160-833 |
| Cow position: | chr3:68027093-68027763 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 15 |
| Conread position: | 162-834 |
| Cow position: | chr3:62722238-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 7 |
| Conread position: | 182-840 |
| Cow position: | chr3:62722387-62721729 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 182-867 |
| Cow position: | chr3:77351302-77350629 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 213-702 |
| Cow position: | chr3:20194775-20195264 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 170, 156 |
| Conread position: | 222-841 |
| Cow position: | chr3:62742257-62742870 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 223-770 |
| Cow position: | chr3:77351094-77350557 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 68 |
| Conread position: | 316-552 |
| Cow position: | chr3:16020391-16020159 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 331-864 |
| Cow position: | chr3:62722322-62721789 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 447 |
| Conread position: | 360-859 |
| Cow position: | chr3:62742229-62742722 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 376-841 |
| Cow position: | chr3:68045565-68046030 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 344 |
| Conread position: | 376-864 |
| Cow position: | chr3:62722361-62721873 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 388-827 |
| Cow position: | chr3:20194782-20195221 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 42 |
| Conread position: | 402-701 |
| Cow position: | chr3:16020466-16020178 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 484-750 |
| Cow position: | chr3:16020468-16020209 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 602-864 |
| Cow position: | chr3:62722387-62722125 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 66, 49 |
Show alignments to all cow chromosomes.