Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8018F21.3 |
| Conread position: | 1-281 |
| Cow position: | chr7:11600761-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 160, 171 |
| Conread position: | 1-493 |
| Cow position: | chr7:18390336-18390831 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 171 |
| Conread position: | 1-630 |
| Cow position: | chr7:1014861-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-703 |
| Cow position: | chr7:8325411-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 1-824 |
| Cow position: | chr7:42879102-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 172 |
| Conread position: | 1-834 |
| Cow position: | chr7:8325243-8326079 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 1-841 |
| Cow position: | chr7:8243057-8243899 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 139 |
| Conread position: | 1-846 |
| Cow position: | chr7:8277770-8278616 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 1-859 |
| Cow position: | chr7:3179871-3180732 (view UCSC Genome Browser custom track) |
| Alignm length: | 864 |
| Alignm identity: | 601 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 138 |
| Conread position: | 1-859 |
| Cow position: | chr7:8325159-8326020 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 56 |
| Conread position: | 1-865 |
| Cow position: | chr7:8324739-8325606 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 2-276 |
| Cow position: | chr7:1439981-1440258 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 4-367 |
| Cow position: | chr7:11600842-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 4-859 |
| Cow position: | chr7:1014282-1015134 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 368 |
| Conread position: | 5-585 |
| Cow position: | chr7:42878846-42878263 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 168 |
| Conread position: | 5-720 |
| Cow position: | chr7:1439564-1440282 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 28 |
| Conread position: | 5-742 |
| Cow position: | chr7:11601177-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 167 |
| Conread position: | 5-785 |
| Cow position: | chr7:8277942-8278716 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 5-791 |
| Cow position: | chr7:8325331-8326120 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 5-831 |
| Cow position: | chr7:8325499-8326324 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 5-833 |
| Cow position: | chr7:3179959-3180790 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 272 |
| Conread position: | 5-834 |
| Cow position: | chr7:3180043-3180874 (view UCSC Genome Browser custom track) |
| Alignm length: | 837 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 5-841 |
| Cow position: | chr7:8277690-8278527 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 5-846 |
| Cow position: | chr7:8324827-8325671 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 7-786 |
| Cow position: | chr7:1439482-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 7-864 |
| Cow position: | chr7:3179709-3180569 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 606 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 456 |
| Conread position: | 8-742 |
| Cow position: | chr7:42879011-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 211 |
| Conread position: | 8-839 |
| Cow position: | chr7:1014370-1015198 (view UCSC Genome Browser custom track) |
| Alignm length: | 837 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 131 |
| Conread position: | 16-566 |
| Cow position: | chr7:18390267-18390820 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 19-839 |
| Cow position: | chr7:42879252-42878429 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 154 |
| Conread position: | 41-864 |
| Cow position: | chr7:3179659-3180485 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 741 |
| Conread position: | 49-829 |
| Cow position: | chr7:42879138-42878355 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 248 |
| Conread position: | 57-830 |
| Cow position: | chr7:8277658-8278434 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 212 |
| Conread position: | 58-628 |
| Cow position: | chr7:18390225-18390798 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 43 |
| Conread position: | 63-846 |
| Cow position: | chr7:1014671-1015457 (view UCSC Genome Browser custom track) |
| Alignm length: | 792 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 68-702 |
| Cow position: | chr7:18390151-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 117 |
| Conread position: | 70-658 |
| Cow position: | chr7:8243881-8244454 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 114, 132 |
| Conread position: | 72-787 |
| Cow position: | chr7:8243044-8243761 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 235 |
| Conread position: | 73-671 |
| Cow position: | chr7:11434822-11434228 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 145 |
| Conread position: | 75-787 |
| Cow position: | chr7:8243382-8244094 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 75-877 |
| Cow position: | chr7:8277256-8278062 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 44 |
| Conread position: | 78-833 |
| Cow position: | chr7:42879277-42878519 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 133 |
| Conread position: | 79-827 |
| Cow position: | chr7:11434970-11434240 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 79-859 |
| Cow position: | chr7:1014273-1015050 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 377 |
| Conread position: | 99-859 |
| Cow position: | chr7:42879424-42878661 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 103-859 |
| Cow position: | chr7:18390018-18390777 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 206 |
| Conread position: | 137-864 |
| Cow position: | chr7:11601213-11600483 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 82 |
| Conread position: | 141-635 |
| Cow position: | chr7:1438227-1438724 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 319 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 141-841 |
| Cow position: | chr7:1439448-1440151 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 146 |
| Conread position: | 144-841 |
| Cow position: | chr7:1014668-1015368 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 160-859 |
| Cow position: | chr7:11434969-11434292 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 9 |
| Conread position: | 161-864 |
| Cow position: | chr7:8324735-8325437 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 211-841 |
| Cow position: | chr7:8243018-8243647 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 98 |
| Conread position: | 215-866 |
| Cow position: | chr7:8242937-8243588 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 241 |
| Conread position: | 216-865 |
| Cow position: | chr7:1438057-1438701 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 382 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 485, 12 |
| Conread position: | 219-900 |
| Cow position: | chr7:8277655-8278338 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 85 |
| Conread position: | 221-864 |
| Cow position: | chr7:42879215-42878572 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 75 |
| Conread position: | 222-859 |
| Cow position: | chr7:1439448-1440085 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 71 |
| Conread position: | 223-786 |
| Cow position: | chr7:18390225-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 43 |
| Conread position: | 235-859 |
| Cow position: | chr7:8243126-8243749 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 73 |
| Conread position: | 243-864 |
| Cow position: | chr7:1014272-1014887 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 245-841 |
| Cow position: | chr7:18389995-18390591 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 548, 531 |
| Conread position: | 307-786 |
| Cow position: | chr7:1438228-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 315-841 |
| Cow position: | chr7:8242870-8243395 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 250 |
| Conread position: | 320-859 |
| Cow position: | chr7:42879452-42878913 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 322-859 |
| Cow position: | chr7:1014267-1014798 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 0 |
| Conread position: | 334-842 |
| Cow position: | chr7:8242805-8243313 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 40 |
| Conread position: | 386-859 |
| Cow position: | chr7:1014079-1014552 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 408-834 |
| Cow position: | chr7:11434974-11434562 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 223, 140 |
| Conread position: | 408-839 |
| Cow position: | chr7:8324729-8325160 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 53 |
| Conread position: | 415-864 |
| Cow position: | chr7:42879442-42878992 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 95 |
| Conread position: | 417-846 |
| Cow position: | chr7:8242804-8243233 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 58, 43 |
| Conread position: | 440-826 |
| Cow position: | chr7:1439410-1439802 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 175 |
| Conread position: | 471-840 |
| Cow position: | chr7:1014248-1014617 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 475-839 |
| Cow position: | chr7:18389973-18390337 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 549-865 |
| Cow position: | chr7:3179666-3179982 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 242, 226 |
| Conread position: | 585-864 |
| Cow position: | chr7:8242804-8243083 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 43 |
| Conread position: | 656-841 |
| Cow position: | chr7:8324726-8324910 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 77, 5 |
Show alignments to all cow chromosomes.