Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8018F21.3 |
| Conread position: | 1-243 |
| Cow position: | chrX:29045653-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 159, 203 |
| Conread position: | 1-423 |
| Cow position: | chrX:29045086-29044661 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 212 |
| Conread position: | 1-534 |
| Cow position: | chrX:12627528-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 1-827 |
| Cow position: | chrX:25325161-25324332 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 1-833 |
| Cow position: | chrX:25325077-25324242 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 212 |
| Conread position: | 1-841 |
| Cow position: | chrX:25325581-25324738 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 208 |
| Conread position: | 5-674 |
| Cow position: | chrX:25324905-25324233 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 210 |
| Conread position: | 5-754 |
| Cow position: | chrX:25309816-25310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 452 |
| Conread position: | 5-786 |
| Cow position: | chrX:12627281-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 5-833 |
| Cow position: | chrX:25325241-25324410 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 798 |
| Conread position: | 5-841 |
| Cow position: | chrX:29045733-29044915 (view UCSC Genome Browser custom track) |
| Alignm length: | 843 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 208 |
| Conread position: | 5-867 |
| Cow position: | chrX:25325493-25324629 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 587 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 8-834 |
| Cow position: | chrX:25309735-25310564 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 217 |
| Conread position: | 9-865 |
| Cow position: | chrX:25325321-25324462 (view UCSC Genome Browser custom track) |
| Alignm length: | 864 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 211 |
| Conread position: | 16-754 |
| Cow position: | chrX:25324978-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 196 |
| Conread position: | 19-514 |
| Cow position: | chrX:29045152-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 414 |
| Conread position: | 53-881 |
| Cow position: | chrX:25309696-25310527 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 657 |
| Conread position: | 64-859 |
| Cow position: | chrX:25325602-25324804 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 108 |
| Conread position: | 68-702 |
| Cow position: | chrX:13826875-13826238 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 391 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 70-515 |
| Cow position: | chrX:25310133-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 70-682 |
| Cow position: | chrX:29045269-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 241 |
| Conread position: | 70-839 |
| Cow position: | chrX:25325764-25324992 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 472 |
| Conread position: | 70-859 |
| Cow position: | chrX:29045752-29044981 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 103 |
| Conread position: | 133-839 |
| Cow position: | chrX:29045772-29045085 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 138-759 |
| Cow position: | chrX:29045285-29044661 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 75 |
| Conread position: | 138-833 |
| Cow position: | chrX:29045366-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 292 |
| Conread position: | 142-859 |
| Cow position: | chrX:25325776-25325056 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 85 |
| Conread position: | 167-827 |
| Cow position: | chrX:29045820-29045181 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 44 |
| Conread position: | 168-608 |
| Cow position: | chrX:14181382-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 168-859 |
| Cow position: | chrX:14181634-14180943 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 400 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 188-866 |
| Cow position: | chrX:25309666-25310343 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 189-841 |
| Cow position: | chrX:13826919-13826268 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 200-881 |
| Cow position: | chrX:25325883-25325205 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 207-617 |
| Cow position: | chrX:29045863-29045455 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 16 |
| Conread position: | 223-864 |
| Cow position: | chrX:25325776-25325135 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 234-840 |
| Cow position: | chrX:12627429-12628033 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 368 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 309, 74 |
| Conread position: | 244-859 |
| Cow position: | chrX:13826948-13826333 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 249-841 |
| Cow position: | chrX:14181637-14181045 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 342 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 135, 123 |
| Conread position: | 318-747 |
| Cow position: | chrX:29045837-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 330-788 |
| Cow position: | chrX:12627273-12627729 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 302, 218 |
| Conread position: | 339-859 |
| Cow position: | chrX:29045333-29044813 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 444 |
| Conread position: | 387-836 |
| Cow position: | chrX:29045852-29045402 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 389 |
| Conread position: | 424-841 |
| Cow position: | chrX:25309652-25310067 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 9 |
| Conread position: | 465-839 |
| Cow position: | chrX:29045858-29045484 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 71, 85 |
| Conread position: | 518-859 |
| Cow position: | chrX:25309660-25310001 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 273, 258 |
| Conread position: | 570-859 |
| Cow position: | chrX:29045837-29045548 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 221, 206 |
Show alignments to all cow chromosomes.