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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8018I16.3
        

               
Conread position:
               
54-514
               

               
Cow position:
               
chr28:2088998-2089458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 18
               

               
Conread position:
               
81-533
               

               
Cow position:
               
chr28:26103253-26103684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
47, 216
               

               
Conread position:
               
82-453
               

               
Cow position:
               
chr28:10512672-10513044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 289
               

               
Conread position:
               
100-438
               

               
Cow position:
               
chr28:5837640-5837992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
77, 6
               

               
Conread position:
               
101-596
               

               
Cow position:
               
chr28:11752598-11752102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
102-293
               

               
Cow position:
               
chr28:25424800-25424604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
102-297
               

               
Cow position:
               
chr28:10172913-10172717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 183
               

               
Conread position:
               
102-301
               

               
Cow position:
               
chr28:25314724-25314928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
102-313
               

               
Cow position:
               
chr28:20719339-20719561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
102-327
               

               
Cow position:
               
chr28:16387121-16387346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
23, 174
               

               
Conread position:
               
102-360
               

               
Cow position:
               
chr28:31068319-31068055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
102-365
               

               
Cow position:
               
chr28:20251526-20251793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
102-472
               

               
Cow position:
               
chr28:31142414-31142053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 20
               

               
Conread position:
               
102-510
               

               
Cow position:
               
chr28:7830367-7830777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 269
               

               
Conread position:
               
102-514
               

               
Cow position:
               
chr28:28116424-28116834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
177, 219
               

               
Conread position:
               
102-539
               

               
Cow position:
               
chr28:15935092-15934657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
102-589
               

               
Cow position:
               
chr28:4188101-4188572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 21
               

               
Conread position:
               
102-590
               

               
Cow position:
               
chr28:15677439-15677915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
102-595
               

               
Cow position:
               
chr28:9285814-9285334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 14
               

               
Conread position:
               
103-450
               

               
Cow position:
               
chr28:19358671-19358315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
103-589
               

               
Cow position:
               
chr28:7864881-7865355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 12
               

               
Conread position:
               
104-450
               

               
Cow position:
               
chr28:17762202-17762553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
63, 194
               

               
Conread position:
               
104-584
               

               
Cow position:
               
chr28:2814947-2814482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 63
               

               
Conread position:
               
104-590
               

               
Cow position:
               
chr28:15590538-15591005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 119
               

               
Conread position:
               
105-294
               

               
Cow position:
               
chr28:19393424-19393614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
105-607
               

               
Cow position:
               
chr28:22308214-22308687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 24
               

               
Conread position:
               
106-505
               

               
Cow position:
               
chr28:25805233-25805621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 180
               

               
Conread position:
               
106-644
               

               
Cow position:
               
chr28:18717573-18717043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 199
               

               
Conread position:
               
107-289
               

               
Cow position:
               
chr28:13447288-13447468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
107-316
               

               
Cow position:
               
chr28:19552573-19552364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
62, 72
               

               
Conread position:
               
107-411
               

               
Cow position:
               
chr28:16415708-16416012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 72
               

               
Conread position:
               
107-513
               

               
Cow position:
               
chr28:1508686-1509095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 42
               

               
Conread position:
               
107-541
               

               
Cow position:
               
chr28:6960050-6960482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 84
               

               
Conread position:
               
107-588
               

               
Cow position:
               
chr28:15285991-15285513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 264
               

               
Conread position:
               
107-590
               

               
Cow position:
               
chr28:22322817-22323298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 323
               

               
Conread position:
               
108-274
               

               
Cow position:
               
chr28:330003-329839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
108-290
               

               
Cow position:
               
chr28:13607259-13607442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
96, 154
               

               
Conread position:
               
108-290
               

               
Cow position:
               
chr28:32717447-32717265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
108-303
               

               
Cow position:
               
chr28:2661251-2661046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
28, 156
               

               
Conread position:
               
108-327
               

               
Cow position:
               
chr28:28636360-28636585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
108-450
               

               
Cow position:
               
chr28:11356379-11356028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
62, 23
               

               
Conread position:
               
108-514
               

               
Cow position:
               
chr28:29074212-29073796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
187, 59
               

               
Conread position:
               
108-588
               

               
Cow position:
               
chr28:11787152-11786691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 195
               

               
Conread position:
               
108-590
               

               
Cow position:
               
chr28:20312827-20313306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 249
               

               
Conread position:
               
108-590
               

               
Cow position:
               
chr28:28766343-28765874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 56
               

               
Conread position:
               
108-595
               

               
Cow position:
               
chr28:22279629-22279164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 22
               

               
Conread position:
               
109-238
               

               
Cow position:
               
chr28:25596217-25596346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-242
               

               
Cow position:
               
chr28:7014155-7014022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-242
               

               
Cow position:
               
chr28:25767784-25767917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
62, 81
               

               
Conread position:
               
109-246
               

               
Cow position:
               
chr28:15410411-15410548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-256
               

               
Cow position:
               
chr28:23477816-23477669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-263
               

               
Cow position:
               
chr28:445209-445363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-274
               

               
Cow position:
               
chr28:4938266-4938428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
109-279
               

               
Cow position:
               
chr28:12081122-12080948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
63, 85
               

               
Conread position:
               
109-281
               

               
Cow position:
               
chr28:1550652-1550827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
109-281
               

               
Cow position:
               
chr28:34199896-34199721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
109-287
               

               
Cow position:
               
chr28:32365519-32365701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
109-290
               

               
Cow position:
               
chr28:15264408-15264229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 58
               

               
Conread position:
               
109-290
               

               
Cow position:
               
chr28:24487586-24487406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
77, 47
               

               
Conread position:
               
109-290
               

               
Cow position:
               
chr28:27660193-27660008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
109-291
               

               
Cow position:
               
chr28:3068700-3068889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
109-291
               

               
Cow position:
               
chr28:28076914-28076726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
109-295
               

               
Cow position:
               
chr28:8855703-8855894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 183
               

               
Conread position:
               
109-295
               

               
Cow position:
               
chr28:19961438-19961631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
109-295
               

               
Cow position:
               
chr28:23544426-23544611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
109-301
               

               
Cow position:
               
chr28:22645055-22645252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
67, 157
               

               
Conread position:
               
109-303
               

               
Cow position:
               
chr28:4375769-4375569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
109-304
               

               
Cow position:
               
chr28:13865356-13865557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
67, 51
               

               
Conread position:
               
109-311
               

               
Cow position:
               
chr28:3494069-3493869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
109-312
               

               
Cow position:
               
chr28:33256118-33256321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-313
               

               
Cow position:
               
chr28:12156489-12156694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
109-313
               

               
Cow position:
               
chr28:23773470-23773268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
109-314
               

               
Cow position:
               
chr28:17576660-17576458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
109-314
               

               
Cow position:
               
chr28:22488486-22488692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 47
               

               
Conread position:
               
109-317
               

               
Cow position:
               
chr28:34851151-34851359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
203, 19
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr28:746725-746943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr28:13536486-13536704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr28:28934153-28933935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-330
               

               
Cow position:
               
chr28:790137-789916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-348
               

               
Cow position:
               
chr28:1883299-1883072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
216, 91
               

               
Conread position:
               
109-349
               

               
Cow position:
               
chr28:20772276-20772520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
64, 136
               

               
Conread position:
               
109-376
               

               
Cow position:
               
chr28:32823915-32824186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 32
               

               
Conread position:
               
109-380
               

               
Cow position:
               
chr28:12342813-12342540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 263
               

               
Conread position:
               
109-387
               

               
Cow position:
               
chr28:19194317-19194596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 58
               

               
Conread position:
               
109-401
               

               
Cow position:
               
chr28:26466233-26466530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
109-409
               

               
Cow position:
               
chr28:7946201-7945900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-409
               

               
Cow position:
               
chr28:15965784-15965494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
217, 135
               

               
Conread position:
               
109-409
               

               
Cow position:
               
chr28:18559166-18558876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
217, 135
               

               
Conread position:
               
109-409
               

               
Cow position:
               
chr28:22582591-22582892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-412
               

               
Cow position:
               
chr28:17744531-17744220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
71, 132
               

               
Conread position:
               
109-412
               

               
Cow position:
               
chr28:28185355-28185654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 197
               

               
Conread position:
               
109-413
               

               
Cow position:
               
chr28:1316235-1315933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 82
               

               
Conread position:
               
109-413
               

               
Cow position:
               
chr28:10772880-10773170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
290, 97
               

               
Conread position:
               
109-413
               

               
Cow position:
               
chr28:12406367-12406082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
290, 91
               

               
Conread position:
               
109-421
               

               
Cow position:
               
chr28:28724028-28724340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
216, 68
               

               
Conread position:
               
109-422
               

               
Cow position:
               
chr28:10578062-10577750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
109-422
               

               
Cow position:
               
chr28:23114728-23114414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-434
               

               
Cow position:
               
chr28:23254232-23253922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 137
               

               
Conread position:
               
109-443
               

               
Cow position:
               
chr28:6354946-6355279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
156, 55
               

               
Conread position:
               
109-444
               

               
Cow position:
               
chr28:10867458-10867799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
109-445
               

               
Cow position:
               
chr28:4058283-4058614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 60
               

               
Conread position:
               
109-447
               

               
Cow position:
               
chr28:7882359-7882698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 172
               

               
Conread position:
               
109-448
               

               
Cow position:
               
chr28:10295746-10296082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 173
               

               
Conread position:
               
109-450
               

               
Cow position:
               
chr28:7724120-7723774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 196
               

               
Conread position:
               
109-450
               

               
Cow position:
               
chr28:10674257-10674582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
109-450
               

               
Cow position:
               
chr28:18180578-18180245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
82, 130
               

               
Conread position:
               
109-450
               

               
Cow position:
               
chr28:20518453-20518807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
67, 318
               

               
Conread position:
               
109-451
               

               
Cow position:
               
chr28:11602194-11601849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
83, 71
               

               
Conread position:
               
109-451
               

               
Cow position:
               
chr28:24215436-24215785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 313
               

               
Conread position:
               
109-452
               

               
Cow position:
               
chr28:4046697-4047036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
56, 86
               

               
Conread position:
               
109-452
               

               
Cow position:
               
chr28:11924273-11923919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
28, 307
               

               
Conread position:
               
109-459
               

               
Cow position:
               
chr28:7372696-7372351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 241
               

               
Conread position:
               
109-459
               

               
Cow position:
               
chr28:7697448-7697103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 117
               

               
Conread position:
               
109-461
               

               
Cow position:
               
chr28:33697667-33698024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
98, 223
               

               
Conread position:
               
109-463
               

               
Cow position:
               
chr28:34655894-34656250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 264
               

               
Conread position:
               
109-468
               

               
Cow position:
               
chr28:27754765-27755123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-470
               

               
Cow position:
               
chr28:7595837-7595457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 298
               

               
Conread position:
               
109-473
               

               
Cow position:
               
chr28:6047601-6047965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 296
               

               
Conread position:
               
109-473
               

               
Cow position:
               
chr28:32785413-32785055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
216, 32
               

               
Conread position:
               
109-476
               

               
Cow position:
               
chr28:10870899-10871266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-481
               

               
Cow position:
               
chr28:8372037-8372396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 22
               

               
Conread position:
               
109-486
               

               
Cow position:
               
chr28:16388206-16388558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
109-488
               

               
Cow position:
               
chr28:5311540-5311161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-488
               

               
Cow position:
               
chr28:10868601-10868222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-488
               

               
Cow position:
               
chr28:12980996-12980614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 84
               

               
Conread position:
               
109-491
               

               
Cow position:
               
chr28:3161528-3161138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 178
               

               
Conread position:
               
109-492
               

               
Cow position:
               
chr28:16440955-16441316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
216, 16
               

               
Conread position:
               
109-492
               

               
Cow position:
               
chr28:22304416-22304781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
217, 70
               

               
Conread position:
               
109-492
               

               
Cow position:
               
chr28:27938630-27939013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chr28:10193225-10192826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 302
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chr28:20264926-20265336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 106
               

               
Conread position:
               
109-507
               

               
Cow position:
               
chr28:22254383-22253992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 143
               

               
Conread position:
               
109-507
               

               
Cow position:
               
chr28:34150985-34150584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 114
               

               
Conread position:
               
109-510
               

               
Cow position:
               
chr28:10563204-10563604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 209
               

               
Conread position:
               
109-510
               

               
Cow position:
               
chr28:16597957-16598362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 171
               

               
Conread position:
               
109-510
               

               
Cow position:
               
chr28:23802212-23802604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 71
               

               
Conread position:
               
109-510
               

               
Cow position:
               
chr28:26419191-26418789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 183
               

               
Conread position:
               
109-510
               

               
Cow position:
               
chr28:33640379-33640780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 108
               

               
Conread position:
               
109-511
               

               
Cow position:
               
chr28:29823995-29824399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 70
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:786467-786874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 294
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:1811186-1810786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 117
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:1957173-1957580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:2422519-2422925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:3627885-3628292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:3882140-3881733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:5071605-5071198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:5941297-5941704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:6319353-6318946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 265
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:7005838-7006253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
216, 318
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:7336788-7337194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 187
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:7745892-7746305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 34
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:7888275-7887869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:8111143-8111567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
156, 279
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:9710344-9709937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:10473763-10474164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:11931828-11931424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 84
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:12117430-12117022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 263
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:12701677-12702084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:15712817-15713218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 173
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:15916718-15916311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:16182158-16182562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:17131051-17130648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 164
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:17369859-17370261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
225, 157
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:17392375-17392782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:17687851-17687444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:18096532-18096937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 241
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:18516335-18515931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 325
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:19186033-19186440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:20934589-20934185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 138
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:21491616-21491209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:21893962-21893564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:22208972-22208571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:23309526-23309119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:23685848-23686255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:24592320-24592727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:24603735-24604133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 129
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:24993297-24993704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:25683399-25682992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:25829205-25829608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:26727857-26727460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 215
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:26781638-26782045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:28471827-28472217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
217, 125
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:29035841-29035435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 288
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:29222477-29222075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 220
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:29683047-29683454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:30098686-30099093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:30532188-30531781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:33466376-33466786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 125
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr28:33689319-33689726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-515
               

               
Cow position:
               
chr28:21767340-21766933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 58
               

               
Conread position:
               
109-515
               

               
Cow position:
               
chr28:22132477-22132884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 278
               

               
Conread position:
               
109-516
               

               
Cow position:
               
chr28:25826303-25825910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
109-519
               

               
Cow position:
               
chr28:15272704-15272300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 15
               

               
Conread position:
               
109-519
               

               
Cow position:
               
chr28:29806641-29806223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 39
               

               
Conread position:
               
109-520
               

               
Cow position:
               
chr28:30303632-30303231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 151
               

               
Conread position:
               
109-520
               

               
Cow position:
               
chr28:34208268-34208669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
74, 125
               

               
Conread position:
               
109-521
               

               
Cow position:
               
chr28:7685121-7684719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 137
               

               
Conread position:
               
109-528
               

               
Cow position:
               
chr28:11451919-11451493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 58
               

               
Conread position:
               
109-531
               

               
Cow position:
               
chr28:16215341-16214930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 225
               

               
Conread position:
               
109-535
               

               
Cow position:
               
chr28:11047131-11047570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 306
               

               
Conread position:
               
109-541
               

               
Cow position:
               
chr28:15375266-15374839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 58
               

               
Conread position:
               
109-558
               

               
Cow position:
               
chr28:11827047-11827490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
109-561
               

               
Cow position:
               
chr28:23869042-23869476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
216, 136
               

               
Conread position:
               
109-562
               

               
Cow position:
               
chr28:481900-481444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 74
               

               
Conread position:
               
109-565
               

               
Cow position:
               
chr28:5805073-5805514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 275
               

               
Conread position:
               
109-566
               

               
Cow position:
               
chr28:34082460-34082006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 136
               

               
Conread position:
               
109-570
               

               
Cow position:
               
chr28:6577209-6577650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
66, 167
               

               
Conread position:
               
109-575
               

               
Cow position:
               
chr28:15688570-15689058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
66, 298
               

               
Conread position:
               
109-577
               

               
Cow position:
               
chr28:32747470-32747936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
104, 284
               

               
Conread position:
               
109-578
               

               
Cow position:
               
chr28:10478770-10478326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
175, 166
               

               
Conread position:
               
109-580
               

               
Cow position:
               
chr28:10762240-10762680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
109-582
               

               
Cow position:
               
chr28:25399439-25399893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 173
               

               
Conread position:
               
109-582
               

               
Cow position:
               
chr28:29199284-29199751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 16
               

               
Conread position:
               
109-583
               

               
Cow position:
               
chr28:8787115-8787562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chr28:15107770-15107297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chr28:17316420-17316888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 68
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chr28:18934032-18934477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
219, 25
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chr28:24671826-24672288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 267
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:332258-332732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:800727-800253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 302
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:882957-882483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:1261815-1262289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:5637861-5638335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:6534987-6534513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:18590818-18591295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:22083943-22083469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:25556408-25555942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 220
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:27478577-27479049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 195
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:34379610-34380084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:34579848-34579391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
217, 102
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr28:34581543-34581085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
217, 102
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr28:1199005-1199482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr28:1575695-1575218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr28:4536036-4536483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 104
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr28:5770923-5771397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr28:21354779-21355258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 275
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr28:22577010-22577487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr28:22735884-22736371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 272
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr28:23823515-23823037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr28:29044179-29044654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 306
               

               
Conread position:
               
109-589
               

               
Cow position:
               
chr28:7751732-7751272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 110
               

               
Conread position:
               
109-589
               

               
Cow position:
               
chr28:10977419-10977869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 290
               

               
Conread position:
               
109-589
               

               
Cow position:
               
chr28:26614450-26614901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 214
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr28:3024370-3023884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 190
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr28:4282937-4282461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 100
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr28:4310799-4311277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 259
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr28:13693292-13693784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 271
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr28:18139906-18139427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 303
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr28:18354749-18354299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
209, 71
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr28:21363315-21363776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 69
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr28:21598696-21598223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
381, 17
               

               
Conread position:
               
109-591
               

               
Cow position:
               
chr28:24965940-24966416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 295
               

               
Conread position:
               
109-591
               

               
Cow position:
               
chr28:31648627-31649116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 76
               

               
Conread position:
               
109-592
               

               
Cow position:
               
chr28:25701303-25700832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 50
               

               
Conread position:
               
109-594
               

               
Cow position:
               
chr28:25056525-25057001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 283
               

               
Conread position:
               
109-595
               

               
Cow position:
               
chr28:2645523-2646003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 76
               

               
Conread position:
               
109-595
               

               
Cow position:
               
chr28:4070520-4071001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 122
               

               
Conread position:
               
109-595
               

               
Cow position:
               
chr28:13473867-13474336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 74
               

               
Conread position:
               
109-595
               

               
Cow position:
               
chr28:28163653-28164124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
385, 23
               

               
Conread position:
               
109-596
               

               
Cow position:
               
chr28:15605333-15605819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-596
               

               
Cow position:
               
chr28:22319095-22318609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-617
               

               
Cow position:
               
chr28:5553354-5552884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
232, 53
               

               
Conread position:
               
109-656
               

               
Cow position:
               
chr28:32589509-32590056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
203, 503
               

               
Conread position:
               
110-274
               

               
Cow position:
               
chr28:10280639-10280803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-284
               

               
Cow position:
               
chr28:12097170-12097000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
76, 62
               

               
Conread position:
               
110-290
               

               
Cow position:
               
chr28:11710144-11709964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-296
               

               
Cow position:
               
chr28:26370464-26370645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
110-303
               

               
Cow position:
               
chr28:14721283-14721090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-303
               

               
Cow position:
               
chr28:34598051-34598244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-312
               

               
Cow position:
               
chr28:1537237-1537439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-316
               

               
Cow position:
               
chr28:34754083-34753877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-326
               

               
Cow position:
               
chr28:11738153-11738366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
110-336
               

               
Cow position:
               
chr28:11256074-11255839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
110-340
               

               
Cow position:
               
chr28:10699415-10699200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
110-340
               

               
Cow position:
               
chr28:24674276-24674508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
222, 0
               

               
Conread position:
               
110-344
               

               
Cow position:
               
chr28:34880773-34880535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 100
               

               
Conread position:
               
110-348
               

               
Cow position:
               
chr28:2090152-2090387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
230, 171
               

               
Conread position:
               
110-365
               

               
Cow position:
               
chr28:31847491-31847233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
110-372
               

               
Cow position:
               
chr28:24580499-24580765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 102
               

               
Conread position:
               
110-397
               

               
Cow position:
               
chr28:24686177-24686465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
101, 216
               

               
Conread position:
               
110-438
               

               
Cow position:
               
chr28:22359109-22359437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
60, 185
               

               
Conread position:
               
110-446
               

               
Cow position:
               
chr28:17599172-17598830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
59, 179
               

               
Conread position:
               
110-448
               

               
Cow position:
               
chr28:11690660-11690307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
56, 236
               

               
Conread position:
               
110-450
               

               
Cow position:
               
chr28:8911665-8911325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 260
               

               
Conread position:
               
110-451
               

               
Cow position:
               
chr28:13178945-13179282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
65, 97
               

               
Conread position:
               
110-466
               

               
Cow position:
               
chr28:5371352-5371000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 184
               

               
Conread position:
               
110-476
               

               
Cow position:
               
chr28:2616013-2615647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 261
               

               
Conread position:
               
110-503
               

               
Cow position:
               
chr28:12457725-12458107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 50
               

               
Conread position:
               
110-507
               

               
Cow position:
               
chr28:34626605-34626988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
215, 12
               

               
Conread position:
               
110-510
               

               
Cow position:
               
chr28:1943486-1943082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 263
               

               
Conread position:
               
110-510
               

               
Cow position:
               
chr28:2949098-2949494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 295
               

               
Conread position:
               
110-510
               

               
Cow position:
               
chr28:5747895-5747502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 286
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr28:5212149-5212553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 83
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr28:5361458-5361053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 21
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr28:17663138-17662732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 295
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr28:28340854-28341256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 79
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr28:29658933-29658537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 33
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr28:30210144-30209739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 261
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr28:34243518-34243924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 261
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr28:34731542-34731948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 261
               

               
Conread position:
               
110-515
               

               
Cow position:
               
chr28:6776077-6775669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 261
               

               
Conread position:
               
110-520
               

               
Cow position:
               
chr28:10642466-10642055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 177
               

               
Conread position:
               
110-531
               

               
Cow position:
               
chr28:14150794-14151205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 81
               

               
Conread position:
               
110-531
               

               
Cow position:
               
chr28:25070657-25071097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 154
               

               
Conread position:
               
110-564
               

               
Cow position:
               
chr28:32305442-32304987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
110-568
               

               
Cow position:
               
chr28:17030136-17029710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
110-569
               

               
Cow position:
               
chr28:23839771-23840212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
382, 14
               

               
Conread position:
               
110-572
               

               
Cow position:
               
chr28:5768758-5769209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 132
               

               
Conread position:
               
110-579
               

               
Cow position:
               
chr28:7606761-7607254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
110-581
               

               
Cow position:
               
chr28:25726934-25727397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 218
               

               
Conread position:
               
110-587
               

               
Cow position:
               
chr28:11585651-11585176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 141
               

               
Conread position:
               
110-588
               

               
Cow position:
               
chr28:3144331-3143848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 171
               

               
Conread position:
               
110-589
               

               
Cow position:
               
chr28:3914266-3914745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 286
               

               
Conread position:
               
110-589
               

               
Cow position:
               
chr28:11426980-11426513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
382, 146
               

               
Conread position:
               
110-589
               

               
Cow position:
               
chr28:20408939-20409420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 49
               

               
Conread position:
               
110-590
               

               
Cow position:
               
chr28:661667-662135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
110-590
               

               
Cow position:
               
chr28:10529909-10529461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
338, 170
               

               
Conread position:
               
110-590
               

               
Cow position:
               
chr28:16084883-16085354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 119
               

               
Conread position:
               
110-590
               

               
Cow position:
               
chr28:23793769-23793282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 249
               

               
Conread position:
               
110-593
               

               
Cow position:
               
chr28:21868007-21868491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 295
               

               
Conread position:
               
110-595
               

               
Cow position:
               
chr28:8022555-8022066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 262
               

               
Conread position:
               
111-288
               

               
Cow position:
               
chr28:34844505-34844676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 66
               

               
Conread position:
               
111-314
               

               
Cow position:
               
chr28:31842126-31841922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
111-316
               

               
Cow position:
               
chr28:4057258-4057460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
111-316
               

               
Cow position:
               
chr28:22354139-22354342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
111-322
               

               
Cow position:
               
chr28:7981146-7980935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-326
               

               
Cow position:
               
chr28:13290621-13290401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
111-329
               

               
Cow position:
               
chr28:19300852-19301071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
111-337
               

               
Cow position:
               
chr28:6090717-6090944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 163
               

               
Conread position:
               
111-362
               

               
Cow position:
               
chr28:8972531-8972781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 57
               

               
Conread position:
               
111-365
               

               
Cow position:
               
chr28:32174206-32174465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
56, 200
               

               
Conread position:
               
111-403
               

               
Cow position:
               
chr28:25128426-25128133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 0
               

               
Conread position:
               
111-405
               

               
Cow position:
               
chr28:22164525-22164822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 159
               

               
Conread position:
               
111-443
               

               
Cow position:
               
chr28:14742355-14742689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 315
               

               
Conread position:
               
111-450
               

               
Cow position:
               
chr28:30967018-30967356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
52, 246
               

               
Conread position:
               
111-451
               

               
Cow position:
               
chr28:527069-527392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
256, 65
               

               
Conread position:
               
111-462
               

               
Cow position:
               
chr28:30249938-30250289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 260
               

               
Conread position:
               
111-470
               

               
Cow position:
               
chr28:30803155-30803519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
111-484
               

               
Cow position:
               
chr28:21129566-21129201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 246
               

               
Conread position:
               
111-506
               

               
Cow position:
               
chr28:28590288-28590681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
59, 113
               

               
Conread position:
               
111-514
               

               
Cow position:
               
chr28:28356975-28356569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 261
               

               
Conread position:
               
111-549
               

               
Cow position:
               
chr28:4957688-4957255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
66, 166
               

               
Conread position:
               
111-567
               

               
Cow position:
               
chr28:31972198-31971747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 226
               

               
Conread position:
               
111-569
               

               
Cow position:
               
chr28:10607053-10606617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 101
               

               
Conread position:
               
111-581
               

               
Cow position:
               
chr28:3745761-3746217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 65
               

               
Conread position:
               
111-585
               

               
Cow position:
               
chr28:10534377-10533911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 163
               

               
Conread position:
               
111-585
               

               
Cow position:
               
chr28:10589469-10588997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 69
               

               
Conread position:
               
111-588
               

               
Cow position:
               
chr28:30561021-30561496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 260
               

               
Conread position:
               
111-589
               

               
Cow position:
               
chr28:16211535-16211073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 104
               

               
Conread position:
               
111-589
               

               
Cow position:
               
chr28:30327524-30327060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 20
               

               
Conread position:
               
111-590
               

               
Cow position:
               
chr28:16109509-16109968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 171
               

               
Conread position:
               
111-590
               

               
Cow position:
               
chr28:17287787-17288245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 37
               

               
Conread position:
               
111-590
               

               
Cow position:
               
chr28:18790572-18791045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
345, 70
               

               
Conread position:
               
111-590
               

               
Cow position:
               
chr28:21380441-21380910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
111-590
               

               
Cow position:
               
chr28:26922819-26922339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 151
               

               
Conread position:
               
111-592
               

               
Cow position:
               
chr28:21672371-21672826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
111-594
               

               
Cow position:
               
chr28:34560918-34561383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 41
               

               
Conread position:
               
111-595
               

               
Cow position:
               
chr28:3256360-3256834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
381, 26
               

               
Conread position:
               
111-595
               

               
Cow position:
               
chr28:20124346-20124820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 172
               

               
Conread position:
               
111-595
               

               
Cow position:
               
chr28:21844512-21844993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 294
               

               
Conread position:
               
111-595
               

               
Cow position:
               
chr28:22500922-22500465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 98
               

               
Conread position:
               
112-301
               

               
Cow position:
               
chr28:13242498-13242313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
112-419
               

               
Cow position:
               
chr28:24737570-24737877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
58, 179
               

               
Conread position:
               
112-498
               

               
Cow position:
               
chr28:14234544-14234912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 15
               

               
Conread position:
               
112-515
               

               
Cow position:
               
chr28:21104286-21103878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 169
               

               
Conread position:
               
112-541
               

               
Cow position:
               
chr28:12049144-12048721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 48
               

               
Conread position:
               
112-547
               

               
Cow position:
               
chr28:27684148-27683716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 293
               

               
Conread position:
               
112-548
               

               
Cow position:
               
chr28:10900379-10900809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 114
               

               
Conread position:
               
112-575
               

               
Cow position:
               
chr28:22171173-22170695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 298
               

               
Conread position:
               
112-582
               

               
Cow position:
               
chr28:10879332-10879790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 279
               

               
Conread position:
               
112-590
               

               
Cow position:
               
chr28:5792265-5792737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 70
               

               
Conread position:
               
113-585
               

               
Cow position:
               
chr28:4139119-4138647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 186
               

               
Conread position:
               
113-590
               

               
Cow position:
               
chr28:25806156-25806602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 43
               

               
Conread position:
               
113-595
               

               
Cow position:
               
chr28:5684263-5684739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 297
               

               
Conread position:
               
114-589
               

               
Cow position:
               
chr28:15063762-15063311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
115-450
               

               
Cow position:
               
chr28:13719080-13719410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
116-288
               

               
Cow position:
               
chr28:25248930-25249107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
116-311
               

               
Cow position:
               
chr28:3871276-3871476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 154
               

               
Conread position:
               
116-413
               

               
Cow position:
               
chr28:32729678-32729373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
78, 226
               

               
Conread position:
               
116-467
               

               
Cow position:
               
chr28:22329876-22330234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 182
               

               
Conread position:
               
116-514
               

               
Cow position:
               
chr28:28798732-28798334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
116-535
               

               
Cow position:
               
chr28:23615964-23616386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 292
               

               
Conread position:
               
116-590
               

               
Cow position:
               
chr28:1837559-1838022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 166
               

               
Conread position:
               
117-303
               

               
Cow position:
               
chr28:24997071-24996883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
101, 136
               

               
Conread position:
               
117-303
               

               
Cow position:
               
chr28:31415902-31415708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
117-365
               

               
Cow position:
               
chr28:25910530-25910778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 122
               

               
Conread position:
               
117-461
               

               
Cow position:
               
chr28:9264898-9265252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
56, 39
               

               
Conread position:
               
117-492
               

               
Cow position:
               
chr28:20760359-20759987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 15
               

               
Conread position:
               
117-505
               

               
Cow position:
               
chr28:3245909-3246279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
212, 7
               

               
Conread position:
               
117-505
               

               
Cow position:
               
chr28:25762594-25762979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 167
               

               
Conread position:
               
117-525
               

               
Cow position:
               
chr28:3001048-3000630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 206
               

               
Conread position:
               
117-544
               

               
Cow position:
               
chr28:22317048-22317461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
101, 78
               

               
Conread position:
               
117-595
               

               
Cow position:
               
chr28:16346952-16346495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 50
               

               
Conread position:
               
118-410
               

               
Cow position:
               
chr28:16003630-16003922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
118-447
               

               
Cow position:
               
chr28:16246700-16246378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 49
               

               
Conread position:
               
118-451
               

               
Cow position:
               
chr28:22269912-22270249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
65, 200
               

               
Conread position:
               
118-582
               

               
Cow position:
               
chr28:29392564-29393034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 132
               

               
Conread position:
               
118-590
               

               
Cow position:
               
chr28:23530428-23530903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 248
               

               
Conread position:
               
118-590
               

               
Cow position:
               
chr28:32300808-32300325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 284
               

               
Conread position:
               
119-302
               

               
Cow position:
               
chr28:24886670-24886846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
119-336
               

               
Cow position:
               
chr28:20147616-20147840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 193
               

               
Conread position:
               
119-488
               

               
Cow position:
               
chr28:9182688-9183057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 252
               

               
Conread position:
               
119-533
               

               
Cow position:
               
chr28:9851213-9851593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
373, 48
               

               
Conread position:
               
119-585
               

               
Cow position:
               
chr28:14610324-14610788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 252
               

               
Conread position:
               
119-588
               

               
Cow position:
               
chr28:25104655-25105122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 169
               

               
Conread position:
               
120-285
               

               
Cow position:
               
chr28:29726736-29726902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
120-506
               

               
Cow position:
               
chr28:32362332-32362711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
120-512
               

               
Cow position:
               
chr28:7209304-7208916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
209, 231
               

               
Conread position:
               
120-590
               

               
Cow position:
               
chr28:5475461-5474999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
50, 175
               

               
Conread position:
               
120-590
               

               
Cow position:
               
chr28:19222580-19222122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
121-438
               

               
Cow position:
               
chr28:26984089-26983765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 284
               

               
Conread position:
               
122-588
               

               
Cow position:
               
chr28:25563648-25564112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 50
               

               
Conread position:
               
123-287
               

               
Cow position:
               
chr28:11818345-11818176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 109
               

               
Conread position:
               
123-585
               

               
Cow position:
               
chr28:10934591-10934130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 249
               

               
Conread position:
               
124-453
               

               
Cow position:
               
chr28:757693-757369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
39, 7
               

               
Conread position:
               
127-514
               

               
Cow position:
               
chr28:11281132-11280740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 247
               

               
Conread position:
               
129-583
               

               
Cow position:
               
chr28:11687459-11686999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 181
               

               
Conread position:
               
130-451
               

               
Cow position:
               
chr28:11025499-11025171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
53, 82
               

               
Conread position:
               
130-470
               

               
Cow position:
               
chr28:33944030-33943691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
195, 63
               

               
Conread position:
               
130-591
               

               
Cow position:
               
chr28:26268911-26269361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 95
               

               
Conread position:
               
131-284
               

               
Cow position:
               
chr28:9739716-9739869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-313
               

               
Cow position:
               
chr28:9637323-9637141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-326
               

               
Cow position:
               
chr28:6472806-6473001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-373
               

               
Cow position:
               
chr28:2842152-2842392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
112, 156
               

               
Conread position:
               
131-412
               

               
Cow position:
               
chr28:12593212-12593490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
198, 0
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr28:1213972-1213586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 274
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr28:4582816-4583200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 50
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr28:11547502-11547133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 193
               

               
Conread position:
               
131-590
               

               
Cow position:
               
chr28:11527684-11527229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 166
               

               
Conread position:
               
131-593
               

               
Cow position:
               
chr28:12892826-12892403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
363, 115
               

               
Conread position:
               
131-619
               

               
Cow position:
               
chr28:30294010-30293533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 150
               

               
Conread position:
               
132-328
               

               
Cow position:
               
chr28:24318211-24318009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
38, 151
               

               
Conread position:
               
132-350
               

               
Cow position:
               
chr28:8716917-8716696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
132-451
               

               
Cow position:
               
chr28:15258860-15258541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 166
               

               
Conread position:
               
133-290
               

               
Cow position:
               
chr28:20964039-20963874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
133-357
               

               
Cow position:
               
chr28:16418704-16418928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
133-399
               

               
Cow position:
               
chr28:7443638-7443905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
193, 238
               

               
Conread position:
               
133-415
               

               
Cow position:
               
chr28:8290314-8290600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
133-450
               

               
Cow position:
               
chr28:2512792-2512476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
193, 238
               

               
Conread position:
               
133-514
               

               
Cow position:
               
chr28:25411452-25411835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 238
               

               
Conread position:
               
133-529
               

               
Cow position:
               
chr28:2280086-2279694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
133-580
               

               
Cow position:
               
chr28:3770097-3769645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
34, 262
               

               
Conread position:
               
133-590
               

               
Cow position:
               
chr28:5930931-5931385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 10
               

               
Conread position:
               
134-287
               

               
Cow position:
               
chr28:27428303-27428456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
134-335
               

               
Cow position:
               
chr28:20942125-20941932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
134-508
               

               
Cow position:
               
chr28:13357000-13356638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 70
               

               
Conread position:
               
134-514
               

               
Cow position:
               
chr28:5825676-5826059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
138, 204
               

               
Conread position:
               
134-514
               

               
Cow position:
               
chr28:20966827-20966445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 237
               

               
Conread position:
               
134-589
               

               
Cow position:
               
chr28:12430186-12430634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 174
               

               
Conread position:
               
134-590
               

               
Cow position:
               
chr28:10682241-10681792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 49
               

               
Conread position:
               
135-374
               

               
Cow position:
               
chr28:29942740-29942974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
157, 70
               

               
Conread position:
               
135-413
               

               
Cow position:
               
chr28:16925631-16925353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 265
               

               
Conread position:
               
136-585
               

               
Cow position:
               
chr28:23312734-23312289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 235
               

               
Conread position:
               
140-444
               

               
Cow position:
               
chr28:16365216-16364910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 214
               

               
Conread position:
               
140-514
               

               
Cow position:
               
chr28:23720928-23721291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
11, 142
               

               
Conread position:
               
141-413
               

               
Cow position:
               
chr28:22344293-22344566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 198
               

               
Conread position:
               
141-584
               

               
Cow position:
               
chr28:7197265-7196825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 124
               

               
Conread position:
               
142-450
               

               
Cow position:
               
chr28:23111524-23111829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 131
               

               
Conread position:
               
142-478
               

               
Cow position:
               
chr28:3479853-3480191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 267
               

               
Conread position:
               
143-579
               

               
Cow position:
               
chr28:4021972-4022406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 52
               

               
Conread position:
               
144-514
               

               
Cow position:
               
chr28:5335669-5335298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 133
               

               
Conread position:
               
145-378
               

               
Cow position:
               
chr28:33031822-33032056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
42, 102
               

               
Conread position:
               
145-413
               

               
Cow position:
               
chr28:3097647-3097913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
181, 244
               

               
Conread position:
               
145-449
               

               
Cow position:
               
chr28:5434151-5433846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 144
               

               
Conread position:
               
145-496
               

               
Cow position:
               
chr28:5817439-5817778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 117
               

               
Conread position:
               
145-584
               

               
Cow position:
               
chr28:14433921-14434363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 288
               

               
Conread position:
               
147-327
               

               
Cow position:
               
chr28:9099249-9099429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-292
               

               
Cow position:
               
chr28:6305348-6305490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
150-595
               

               
Cow position:
               
chr28:14997660-14998103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 196
               

               
Conread position:
               
152-594
               

               
Cow position:
               
chr28:30977884-30978305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
214, 102
               

               
Conread position:
               
155-362
               

               
Cow position:
               
chr28:8935327-8935531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
155-446
               

               
Cow position:
               
chr28:7485576-7485289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 34
               

               
Conread position:
               
155-584
               

               
Cow position:
               
chr28:3891834-3892260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
171, 118
               

               
Conread position:
               
157-281
               

               
Cow position:
               
chr28:11079016-11079140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
158-514
               

               
Cow position:
               
chr28:23212382-23212025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 146
               

               
Conread position:
               
159-531
               

               
Cow position:
               
chr28:24606207-24605839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
160-295
               

               
Cow position:
               
chr28:9184548-9184412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
160-392
               

               
Cow position:
               
chr28:10886270-10886037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
166, 211
               

               
Conread position:
               
160-507
               

               
Cow position:
               
chr28:19515786-19515438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 245
               

               
Conread position:
               
160-624
               

               
Cow position:
               
chr28:7503444-7503911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 50
               

               
Conread position:
               
162-510
               

               
Cow position:
               
chr28:12651211-12651560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 143
               

               
Conread position:
               
162-585
               

               
Cow position:
               
chr28:8682241-8681815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 31
               

               
Conread position:
               
163-540
               

               
Cow position:
               
chr28:11733515-11733138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 15
               

               
Conread position:
               
164-457
               

               
Cow position:
               
chr28:3011806-3011528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
161, 13
               

               
Conread position:
               
165-584
               

               
Cow position:
               
chr28:7059896-7060312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
161, 13
               

               
Conread position:
               
166-423
               

               
Cow position:
               
chr28:9647413-9647162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
162, 23
               

               
Conread position:
               
166-573
               

               
Cow position:
               
chr28:30842198-30842580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
283, 105
               

               
Conread position:
               
167-514
               

               
Cow position:
               
chr28:11505409-11505057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
10, 264
               

               
Conread position:
               
167-538
               

               
Cow position:
               
chr28:22332163-22332514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 136
               

               
Conread position:
               
168-525
               

               
Cow position:
               
chr28:19295749-19295391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 127
               

               
Conread position:
               
168-590
               

               
Cow position:
               
chr28:10616336-10615917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 124
               

               
Conread position:
               
169-589
               

               
Cow position:
               
chr28:5904350-5904760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 214
               

               
Conread position:
               
169-594
               

               
Cow position:
               
chr28:34133471-34133896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
106, 226
               

               
Conread position:
               
171-573
               

               
Cow position:
               
chr28:16364352-16363953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 25
               

               
Conread position:
               
171-579
               

               
Cow position:
               
chr28:3750928-3751332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 226
               

               
Conread position:
               
172-371
               

               
Cow position:
               
chr28:25476432-25476631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
172-386
               

               
Cow position:
               
chr28:24694197-24694412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
172-412
               

               
Cow position:
               
chr28:28779195-28779429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
153, 114
               

               
Conread position:
               
172-590
               

               
Cow position:
               
chr28:7268315-7267914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 104
               

               
Conread position:
               
172-590
               

               
Cow position:
               
chr28:15600881-15601306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
7, 25
               

               
Conread position:
               
173-381
               

               
Cow position:
               
chr28:1095983-1096186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
152, 108
               

               
Conread position:
               
173-514
               

               
Cow position:
               
chr28:25693938-25693604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
153, 50
               

               
Conread position:
               
176-595
               

               
Cow position:
               
chr28:3740474-3740912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 308
               

               
Conread position:
               
177-595
               

               
Cow position:
               
chr28:12964200-12964606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
178-488
               

               
Cow position:
               
chr28:13371552-13371244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
68, 219
               

               
Conread position:
               
178-514
               

               
Cow position:
               
chr28:34008319-34007985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
114, 58
               

               
Conread position:
               
178-595
               

               
Cow position:
               
chr28:4587720-4588136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 159
               

               
Conread position:
               
179-461
               

               
Cow position:
               
chr28:28098355-28098638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
146, 164
               

               
Conread position:
               
179-595
               

               
Cow position:
               
chr28:6971714-6971312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
408, 210
               

               
Conread position:
               
180-303
               

               
Cow position:
               
chr28:21873375-21873497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
180-330
               

               
Cow position:
               
chr28:30389824-30389672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
180-347
               

               
Cow position:
               
chr28:5110730-5110562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
180-595
               

               
Cow position:
               
chr28:9267726-9268143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 225
               

               
Conread position:
               
182-585
               

               
Cow position:
               
chr28:33163829-33163435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 78
               

               
Conread position:
               
183-428
               

               
Cow position:
               
chr28:32587871-32588112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
142, 180
               

               
Conread position:
               
183-450
               

               
Cow position:
               
chr28:9126560-9126293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
140, 225
               

               
Conread position:
               
183-590
               

               
Cow position:
               
chr28:19080241-19079816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
184-579
               

               
Cow position:
               
chr28:23480630-23480240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
185-428
               

               
Cow position:
               
chr28:2132343-2132102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
185-476
               

               
Cow position:
               
chr28:10455899-10455608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
141, 186
               

               
Conread position:
               
185-488
               

               
Cow position:
               
chr28:13323117-13322814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
141, 186
               

               
Conread position:
               
185-514
               

               
Cow position:
               
chr28:5270515-5270846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
161, 220
               

               
Conread position:
               
185-584
               

               
Cow position:
               
chr28:7715928-7715531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
141, 186
               

               
Conread position:
               
185-584
               

               
Cow position:
               
chr28:7970853-7970456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
141, 186
               

               
Conread position:
               
185-588
               

               
Cow position:
               
chr28:7794528-7794126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 187
               

               
Conread position:
               
185-590
               

               
Cow position:
               
chr28:5826579-5826979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 203
               

               
Conread position:
               
185-590
               

               
Cow position:
               
chr28:8347352-8347760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
8, 221
               

               
Conread position:
               
185-590
               

               
Cow position:
               
chr28:10744837-10745243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 6
               

               
Conread position:
               
185-595
               

               
Cow position:
               
chr28:12758878-12758464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
185-595
               

               
Cow position:
               
chr28:12946576-12946985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 74
               

               
Conread position:
               
187-465
               

               
Cow position:
               
chr28:11759904-11759630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 184
               

               
Conread position:
               
188-461
               

               
Cow position:
               
chr28:14675141-14675411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
137, 92
               

               
Conread position:
               
189-312
               

               
Cow position:
               
chr28:23459747-23459870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
189-417
               

               
Cow position:
               
chr28:10463971-10463744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
136, 154
               

               
Conread position:
               
189-470
               

               
Cow position:
               
chr28:27503963-27503681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
136, 92
               

               
Conread position:
               
189-513
               

               
Cow position:
               
chr28:28213878-28214197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
136, 216
               

               
Conread position:
               
189-514
               

               
Cow position:
               
chr28:3187654-3187327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
136, 216
               

               
Conread position:
               
189-514
               

               
Cow position:
               
chr28:15616440-15616767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
137, 182
               

               
Conread position:
               
189-590
               

               
Cow position:
               
chr28:12942027-12942411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
274, 88
               

               
Conread position:
               
191-416
               

               
Cow position:
               
chr28:23281580-23281354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
192-514
               

               
Cow position:
               
chr28:6651087-6650764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
134, 5
               

               
Conread position:
               
193-474
               

               
Cow position:
               
chr28:7009362-7009099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
135, 32
               

               
Conread position:
               
193-516
               

               
Cow position:
               
chr28:17738439-17738115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 48
               

               
Conread position:
               
193-585
               

               
Cow position:
               
chr28:15998626-15998238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
133, 53
               

               
Conread position:
               
194-327
               

               
Cow position:
               
chr28:6484634-6484501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
194-587
               

               
Cow position:
               
chr28:5129072-5128703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
195-338
               

               
Cow position:
               
chr28:5145077-5144934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
112, 33
               

               
Conread position:
               
195-514
               

               
Cow position:
               
chr28:9848686-9848367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 139
               

               
Conread position:
               
195-595
               

               
Cow position:
               
chr28:16919520-16919132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 86
               

               
Conread position:
               
196-520
               

               
Cow position:
               
chr28:34443121-34442793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
134, 55
               

               
Conread position:
               
197-514
               

               
Cow position:
               
chr28:4215013-4215332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
128, 83
               

               
Conread position:
               
197-590
               

               
Cow position:
               
chr28:13267424-13267822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 77
               

               
Conread position:
               
198-595
               

               
Cow position:
               
chr28:9426698-9426314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 177
               

               
Conread position:
               
204-548
               

               
Cow position:
               
chr28:23231415-23231075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
244, 88
               

               
Conread position:
               
204-584
               

               
Cow position:
               
chr28:15408791-15408413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
122, 167
               

               
Conread position:
               
205-365
               

               
Cow position:
               
chr28:1521633-1521472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
205-415
               

               
Cow position:
               
chr28:3646360-3646568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
119, 78
               

               
Conread position:
               
206-514
               

               
Cow position:
               
chr28:14113332-14113642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
120, 165
               

               
Conread position:
               
206-590
               

               
Cow position:
               
chr28:34878317-34877939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
124, 29
               

               
Conread position:
               
206-595
               

               
Cow position:
               
chr28:33884062-33884438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 51
               

               
Conread position:
               
207-413
               

               
Cow position:
               
chr28:24994503-24994713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
209-336
               

               
Cow position:
               
chr28:1428164-1428290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
209-446
               

               
Cow position:
               
chr28:31223939-31223706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
209-532
               

               
Cow position:
               
chr28:14933617-14933941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 195
               

               
Conread position:
               
209-569
               

               
Cow position:
               
chr28:20538506-20538864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
116, 28
               

               
Conread position:
               
210-450
               

               
Cow position:
               
chr28:12938657-12938891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
7, 83
               

               
Conread position:
               
210-497
               

               
Cow position:
               
chr28:18278719-18278417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
210-522
               

               
Cow position:
               
chr28:26151681-26151988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 60
               

               
Conread position:
               
210-589
               

               
Cow position:
               
chr28:2961162-2960802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
373, 46
               

               
Conread position:
               
212-354
               

               
Cow position:
               
chr28:10775737-10775880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 64
               

               
Conread position:
               
212-376
               

               
Cow position:
               
chr28:3202798-3202960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
213-461
               

               
Cow position:
               
chr28:25334679-25334926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
213-590
               

               
Cow position:
               
chr28:5203864-5204224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 52
               

               
Conread position:
               
213-595
               

               
Cow position:
               
chr28:7549403-7549022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 191
               

               
Conread position:
               
214-413
               

               
Cow position:
               
chr28:26452945-26452746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 111
               

               
Conread position:
               
214-507
               

               
Cow position:
               
chr28:13889604-13889899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
111, 194
               

               
Conread position:
               
214-590
               

               
Cow position:
               
chr28:7698317-7697949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 55
               

               
Conread position:
               
215-500
               

               
Cow position:
               
chr28:33234748-33235029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
111, 156
               

               
Conread position:
               
216-449
               

               
Cow position:
               
chr28:1884888-1885121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
109, 194
               

               
Conread position:
               
216-450
               

               
Cow position:
               
chr28:5054364-5054131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
218-590
               

               
Cow position:
               
chr28:23675812-23676167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
219-590
               

               
Cow position:
               
chr28:17638199-17637839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
125, 64
               

               
Conread position:
               
220-534
               

               
Cow position:
               
chr28:6486264-6486571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
104, 72
               

               
Conread position:
               
220-577
               

               
Cow position:
               
chr28:7590517-7590165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 48
               

               
Conread position:
               
221-463
               

               
Cow position:
               
chr28:19564926-19564689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
106, 177
               

               
Conread position:
               
222-507
               

               
Cow position:
               
chr28:22040361-22040073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
8, 150
               

               
Conread position:
               
223-395
               

               
Cow position:
               
chr28:27994987-27995158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
225-410
               

               
Cow position:
               
chr28:3427190-3427007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
105, 60
               

               
Conread position:
               
225-588
               

               
Cow position:
               
chr28:22372004-22371654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 28
               

               
Conread position:
               
226-364
               

               
Cow position:
               
chr28:10980812-10980951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
226-514
               

               
Cow position:
               
chr28:34598247-34598537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 179
               

               
Conread position:
               
228-514
               

               
Cow position:
               
chr28:7936566-7936854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
98, 143
               

               
Conread position:
               
228-514
               

               
Cow position:
               
chr28:25893156-25892868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
98, 143
               

               
Conread position:
               
228-579
               

               
Cow position:
               
chr28:4880590-4880246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 171
               

               
Conread position:
               
228-590
               

               
Cow position:
               
chr28:16686708-16687056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
97, 67
               

               
Conread position:
               
229-532
               

               
Cow position:
               
chr28:13725836-13726134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 176
               

               
Conread position:
               
229-589
               

               
Cow position:
               
chr28:12619240-12619603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 57
               

               
Conread position:
               
229-591
               

               
Cow position:
               
chr28:19222919-19222573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 75
               

               
Conread position:
               
230-469
               

               
Cow position:
               
chr28:7013912-7013675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
212, 174
               

               
Conread position:
               
231-381
               

               
Cow position:
               
chr28:25768150-25768302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
231-585
               

               
Cow position:
               
chr28:23489812-23489461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
95, 140
               

               
Conread position:
               
231-595
               

               
Cow position:
               
chr28:7512913-7512548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
234-590
               

               
Cow position:
               
chr28:4308218-4307868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
96, 105
               

               
Conread position:
               
235-466
               

               
Cow position:
               
chr28:5366464-5366221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 184
               

               
Conread position:
               
235-531
               

               
Cow position:
               
chr28:2124120-2124402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
256, 89
               

               
Conread position:
               
235-584
               

               
Cow position:
               
chr28:12260172-12259825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
91, 136
               

               
Conread position:
               
235-584
               

               
Cow position:
               
chr28:30284097-30283750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
91, 136
               

               
Conread position:
               
235-598
               

               
Cow position:
               
chr28:26684796-26685156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
53, 74
               

               
Conread position:
               
236-520
               

               
Cow position:
               
chr28:10888345-10888627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 67
               

               
Conread position:
               
238-531
               

               
Cow position:
               
chr28:15007846-15008135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
238-532
               

               
Cow position:
               
chr28:22300644-22300929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 41
               

               
Conread position:
               
241-514
               

               
Cow position:
               
chr28:9276831-9277105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
85, 192
               

               
Conread position:
               
241-584
               

               
Cow position:
               
chr28:16770279-16770615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 106
               

               
Conread position:
               
243-579
               

               
Cow position:
               
chr28:24343061-24343389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
244-520
               

               
Cow position:
               
chr28:16250354-16250084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 138
               

               
Conread position:
               
244-586
               

               
Cow position:
               
chr28:6546700-6546350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
79, 164
               

               
Conread position:
               
244-586
               

               
Cow position:
               
chr28:10669264-10669604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
80, 117
               

               
Conread position:
               
244-590
               

               
Cow position:
               
chr28:6059777-6059441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
247-486
               

               
Cow position:
               
chr28:16879572-16879344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
247-531
               

               
Cow position:
               
chr28:2800939-2801209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
141, 38
               

               
Conread position:
               
247-565
               

               
Cow position:
               
chr28:28792166-28792472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
78, 106
               

               
Conread position:
               
251-599
               

               
Cow position:
               
chr28:8066480-8066829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
75, 120
               

               
Conread position:
               
255-590
               

               
Cow position:
               
chr28:23008027-23007701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
74, 132
               

               
Conread position:
               
255-590
               

               
Cow position:
               
chr28:31110301-31109975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
193, 10
               

               
Conread position:
               
256-588
               

               
Cow position:
               
chr28:31987306-31987641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
258-589
               

               
Cow position:
               
chr28:15044152-15043833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 106
               

               
Conread position:
               
259-550
               

               
Cow position:
               
chr28:22351196-22351480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
259-584
               

               
Cow position:
               
chr28:1172968-1172645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
67, 112
               

               
Conread position:
               
260-575
               

               
Cow position:
               
chr28:9390659-9390349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 139
               

               
Conread position:
               
261-514
               

               
Cow position:
               
chr28:34852488-34852743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 85
               

               
Conread position:
               
261-590
               

               
Cow position:
               
chr28:7228677-7228356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
264-481
               

               
Cow position:
               
chr28:16450981-16450781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
184, 22
               

               
Conread position:
               
264-532
               

               
Cow position:
               
chr28:24996877-24996614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
266-588
               

               
Cow position:
               
chr28:13412118-13411798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
269-450
               

               
Cow position:
               
chr28:19133497-19133678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
23, 131
               

               
Conread position:
               
271-452
               

               
Cow position:
               
chr28:8103672-8103495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
271-521
               

               
Cow position:
               
chr28:2819475-2819722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
59, 128
               

               
Conread position:
               
272-572
               

               
Cow position:
               
chr28:26784750-26784452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 128
               

               
Conread position:
               
272-590
               

               
Cow position:
               
chr28:26743340-26743655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
192, 126
               

               
Conread position:
               
277-559
               

               
Cow position:
               
chr28:13290432-13290131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 266
               

               
Conread position:
               
277-584
               

               
Cow position:
               
chr28:97405-97100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
277-590
               

               
Cow position:
               
chr28:8408458-8408763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
279-560
               

               
Cow position:
               
chr28:15263999-15263715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
280-590
               

               
Cow position:
               
chr28:27218048-27218352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
283-595
               

               
Cow position:
               
chr28:23410596-23410289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
17, 117
               

               
Conread position:
               
285-590
               

               
Cow position:
               
chr28:34229960-34230257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
53, 120
               

               
Conread position:
               
289-513
               

               
Cow position:
               
chr28:8382068-8382294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
36, 114
               

               
Conread position:
               
291-514
               

               
Cow position:
               
chr28:24887115-24887340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 80
               

               
Conread position:
               
291-517
               

               
Cow position:
               
chr28:2340270-2340493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 17
               

               
Conread position:
               
291-519
               

               
Cow position:
               
chr28:26533279-26533511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 114
               

               
Conread position:
               
291-590
               

               
Cow position:
               
chr28:16253118-16252827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
163, 34
               

               
Conread position:
               
291-595
               

               
Cow position:
               
chr28:2862598-2862904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
291-595
               

               
Cow position:
               
chr28:16204593-16204298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 33
               

               
Conread position:
               
292-532
               

               
Cow position:
               
chr28:16244021-16243785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
292-579
               

               
Cow position:
               
chr28:11380305-11380022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
38, 113
               

               
Conread position:
               
292-590
               

               
Cow position:
               
chr28:3408479-3408189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
190, 110
               

               
Conread position:
               
293-546
               

               
Cow position:
               
chr28:25796855-25797107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 159
               

               
Conread position:
               
293-590
               

               
Cow position:
               
chr28:4841656-4841364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
293-590
               

               
Cow position:
               
chr28:13176940-13176652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
33, 112
               

               
Conread position:
               
293-590
               

               
Cow position:
               
chr28:13865584-13865875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
33, 87
               

               
Conread position:
               
293-590
               

               
Cow position:
               
chr28:26719099-26719372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
199, 81
               

               
Conread position:
               
293-590
               

               
Cow position:
               
chr28:29434688-29434399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 106
               

               
Conread position:
               
293-595
               

               
Cow position:
               
chr28:9740210-9740502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
293-595
               

               
Cow position:
               
chr28:29416978-29416680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
294-529
               

               
Cow position:
               
chr28:28414410-28414645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
294-594
               

               
Cow position:
               
chr28:10172674-10172381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 111
               

               
Conread position:
               
295-517
               

               
Cow position:
               
chr28:21873513-21873730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
45, 108
               

               
Conread position:
               
295-579
               

               
Cow position:
               
chr28:5773383-5773654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
154, 34
               

               
Conread position:
               
296-584
               

               
Cow position:
               
chr28:22484990-22485276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 48
               

               
Conread position:
               
297-531
               

               
Cow position:
               
chr28:15224866-15224633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
174, 100
               

               
Conread position:
               
297-554
               

               
Cow position:
               
chr28:23621291-23621541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
195, 101
               

               
Conread position:
               
297-590
               

               
Cow position:
               
chr28:21502138-21502421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
150, 101
               

               
Conread position:
               
299-590
               

               
Cow position:
               
chr28:19026258-19025976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
299-590
               

               
Cow position:
               
chr28:33051765-33052065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
300-590
               

               
Cow position:
               
chr28:4057732-4058011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
26, 67
               

               
Conread position:
               
301-488
               

               
Cow position:
               
chr28:32813252-32813065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 60
               

               
Conread position:
               
301-583
               

               
Cow position:
               
chr28:24646287-24646561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr28:25424555-25424265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
191, 103
               

               
Conread position:
               
302-492
               

               
Cow position:
               
chr28:16354872-16354672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
302-590
               

               
Cow position:
               
chr28:5236852-5236575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
154, 36
               

               
Conread position:
               
305-590
               

               
Cow position:
               
chr28:20963781-20963500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
86, 103
               

               
Conread position:
               
306-539
               

               
Cow position:
               
chr28:22321174-22321409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
145, 106
               

               
Conread position:
               
306-560
               

               
Cow position:
               
chr28:2905332-2905574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
306-582
               

               
Cow position:
               
chr28:6307644-6307913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
141, 61
               

               
Conread position:
               
306-584
               

               
Cow position:
               
chr28:22345771-22346044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
24, 52
               

               
Conread position:
               
306-586
               

               
Cow position:
               
chr28:16370322-16370058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
306-590
               

               
Cow position:
               
chr28:2898747-2899018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
306-590
               

               
Cow position:
               
chr28:3078926-3078652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
24, 93
               

               
Conread position:
               
306-595
               

               
Cow position:
               
chr28:3493032-3492748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
59, 84
               

               
Conread position:
               
306-595
               

               
Cow position:
               
chr28:4914350-4914055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 119
               

               
Conread position:
               
307-521
               

               
Cow position:
               
chr28:8348901-8348688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
9, 100
               

               
Conread position:
               
307-587
               

               
Cow position:
               
chr28:25596385-25596657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
307-590
               

               
Cow position:
               
chr28:25282960-25283229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
141, 5
               

               
Conread position:
               
307-595
               

               
Cow position:
               
chr28:4938591-4938846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
307-625
               

               
Cow position:
               
chr28:6861706-6862022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
308-587
               

               
Cow position:
               
chr28:13607639-13607914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
308-587
               

               
Cow position:
               
chr28:16386752-16386480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
309-514
               

               
Cow position:
               
chr28:1582847-1583052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
309-585
               

               
Cow position:
               
chr28:14649102-14649374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
29, 89
               

               
Conread position:
               
310-590
               

               
Cow position:
               
chr28:8084453-8084733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
311-535
               

               
Cow position:
               
chr28:6051490-6051711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
311-593
               

               
Cow position:
               
chr28:31841583-31841311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
312-532
               

               
Cow position:
               
chr28:25498746-25498531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 93
               

               
Conread position:
               
313-595
               

               
Cow position:
               
chr28:11423045-11422777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
314-585
               

               
Cow position:
               
chr28:26220021-26220282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
315-595
               

               
Cow position:
               
chr28:9636696-9636421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
317-516
               

               
Cow position:
               
chr28:5658317-5658510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
175, 66
               

               
Conread position:
               
317-525
               

               
Cow position:
               
chr28:23775808-23776013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
320-520
               

               
Cow position:
               
chr28:3077759-3077952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
172, 78
               

               
Conread position:
               
320-523
               

               
Cow position:
               
chr28:26340102-26340308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
10, 85
               

               
Conread position:
               
325-540
               

               
Cow position:
               
chr28:23459916-23460132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
132, 73
               

               
Conread position:
               
325-579
               

               
Cow position:
               
chr28:7980648-7980399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
325-590
               

               
Cow position:
               
chr28:750998-751256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
325-595
               

               
Cow position:
               
chr28:11884751-11884485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
167, 60
               

               
Conread position:
               
329-589
               

               
Cow position:
               
chr28:4016305-4016559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
331-590
               

               
Cow position:
               
chr28:11818184-11817938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
334-595
               

               
Cow position:
               
chr28:2738031-2737770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
164, 79
               

               
Conread position:
               
335-584
               

               
Cow position:
               
chr28:10053557-10053306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
46, 58
               

               
Conread position:
               
335-595
               

               
Cow position:
               
chr28:5074723-5074472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
159, 54
               

               
Conread position:
               
339-522
               

               
Cow position:
               
chr28:9108227-9108411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 67
               

               
Conread position:
               
340-532
               

               
Cow position:
               
chr28:21939982-21940171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
344-589
               

               
Cow position:
               
chr28:4884476-4884228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
142, 61
               

               
Conread position:
               
344-589
               

               
Cow position:
               
chr28:5437301-5437057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
147, 69
               

               
Conread position:
               
347-534
               

               
Cow position:
               
chr28:8935727-8935909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
5, 14
               

               
Conread position:
               
348-582
               

               
Cow position:
               
chr28:22739595-22739813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
106, 30
               

               
Conread position:
               
350-587
               

               
Cow position:
               
chr28:4090248-4090028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 20
               

               
Conread position:
               
357-593
               

               
Cow position:
               
chr28:12367584-12367820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
357-595
               

               
Cow position:
               
chr28:4158755-4158991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
357-595
               

               
Cow position:
               
chr28:4809597-4809815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
234, 48
               

               
Conread position:
               
361-590
               

               
Cow position:
               
chr28:25459333-25459563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
362-590
               

               
Cow position:
               
chr28:26982938-26982709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
364-590
               

               
Cow position:
               
chr28:11866859-11866636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
36, 55
               

               
Conread position:
               
365-522
               

               
Cow position:
               
chr28:11829131-11828981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
368-585
               

               
Cow position:
               
chr28:23724641-23724438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
124, 33
               

               
Conread position:
               
368-595
               

               
Cow position:
               
chr28:6091174-6091394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
215, 45
               

               
Conread position:
               
368-595
               

               
Cow position:
               
chr28:30937852-30937632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
174, 37
               

               
Conread position:
               
370-595
               

               
Cow position:
               
chr28:4835029-4834808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
218, 35
               

               
Conread position:
               
374-585
               

               
Cow position:
               
chr28:2132102-2131900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
170, 31
               

               
Conread position:
               
383-590
               

               
Cow position:
               
chr28:2752676-2752465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
384-595
               

               
Cow position:
               
chr28:24082096-24082306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 8
               

               
Conread position:
               
391-595
               

               
Cow position:
               
chr28:29989279-29989085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
394-576
               

               
Cow position:
               
chr28:657611-657436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
400-589
               

               
Cow position:
               
chr28:18186394-18186584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 151
               

               
Conread position:
               
400-590
               

               
Cow position:
               
chr28:33032104-33032291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 19
               

               
Conread position:
               
403-595
               

               
Cow position:
               
chr28:2872760-2872955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
403-595
               

               
Cow position:
               
chr28:8140327-8140518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 16
               

               
Conread position:
               
405-585
               

               
Cow position:
               
chr28:7542239-7542058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
406-589
               

               
Cow position:
               
chr28:7608133-7607948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
412-525
               

               
Cow position:
               
chr28:10202334-10202445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
414-590
               

               
Cow position:
               
chr28:10863927-10863754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 52
               

               
Conread position:
               
438-573
               

               
Cow position:
               
chr28:11079185-11079320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
446-587
               

               
Cow position:
               
chr28:5577412-5577551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 79
               
Show alignments to all cow chromosomes.