• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8018I16.3
        

               
Conread position:
               
19-585
               

               
Cow position:
               
chr29:2534126-2534690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
307, 352
               

               
Conread position:
               
56-415
               

               
Cow position:
               
chr29:29302535-29302173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
81-401
               

               
Cow position:
               
chr29:37618687-37619008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
92-327
               

               
Cow position:
               
chr29:36299463-36299700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 9
               

               
Conread position:
               
94-470
               

               
Cow position:
               
chr29:12674677-12675050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 28
               

               
Conread position:
               
95-656
               

               
Cow position:
               
chr29:24616164-24616734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 279
               

               
Conread position:
               
97-410
               

               
Cow position:
               
chr29:24669480-24669796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
76, 5
               

               
Conread position:
               
97-450
               

               
Cow position:
               
chr29:133722-134081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
100-312
               

               
Cow position:
               
chr29:29770945-29770735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
166, 14
               

               
Conread position:
               
101-584
               

               
Cow position:
               
chr29:4649179-4648693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 40
               

               
Conread position:
               
101-584
               

               
Cow position:
               
chr29:26778431-26778899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 180
               

               
Conread position:
               
102-281
               

               
Cow position:
               
chr29:7664225-7664044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
102-290
               

               
Cow position:
               
chr29:8136710-8136517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
102-292
               

               
Cow position:
               
chr29:13634789-13634593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
102-294
               

               
Cow position:
               
chr29:30545467-30545277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
71, 20
               

               
Conread position:
               
102-303
               

               
Cow position:
               
chr29:2623971-2623772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
102-306
               

               
Cow position:
               
chr29:18012141-18012344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
102-332
               

               
Cow position:
               
chr29:13093668-13093902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 142
               

               
Conread position:
               
102-352
               

               
Cow position:
               
chr29:43009569-43009318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
192, 23
               

               
Conread position:
               
102-353
               

               
Cow position:
               
chr29:10819122-10818876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
102-365
               

               
Cow position:
               
chr29:36209471-36209728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
102-445
               

               
Cow position:
               
chr29:44607632-44607300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
67, 145
               

               
Conread position:
               
102-465
               

               
Cow position:
               
chr29:38247209-38246844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
102-472
               

               
Cow position:
               
chr29:23154768-23155160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
102-504
               

               
Cow position:
               
chr29:41850260-41849877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
110, 20
               

               
Conread position:
               
102-533
               

               
Cow position:
               
chr29:1956547-1956126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
102-541
               

               
Cow position:
               
chr29:45650786-45650367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 20
               

               
Conread position:
               
102-549
               

               
Cow position:
               
chr29:43495610-43496035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 144
               

               
Conread position:
               
102-588
               

               
Cow position:
               
chr29:6879159-6878676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
102-591
               

               
Cow position:
               
chr29:7666487-7666005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
103-550
               

               
Cow position:
               
chr29:3822401-3822821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 137
               

               
Conread position:
               
104-584
               

               
Cow position:
               
chr29:26450086-26449604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 23
               

               
Conread position:
               
104-590
               

               
Cow position:
               
chr29:12901556-12901082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
358, 63
               

               
Conread position:
               
104-595
               

               
Cow position:
               
chr29:41113303-41112852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
13, 222
               

               
Conread position:
               
105-492
               

               
Cow position:
               
chr29:26289542-26289161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 31
               

               
Conread position:
               
105-513
               

               
Cow position:
               
chr29:16097769-16097367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
220, 160
               

               
Conread position:
               
106-290
               

               
Cow position:
               
chr29:13458540-13458723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
106-472
               

               
Cow position:
               
chr29:22949124-22948754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
68, 305
               

               
Conread position:
               
106-514
               

               
Cow position:
               
chr29:25927009-25926599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 299
               

               
Conread position:
               
106-590
               

               
Cow position:
               
chr29:21443801-21443316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 268
               

               
Conread position:
               
106-595
               

               
Cow position:
               
chr29:31093784-31093302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 265
               

               
Conread position:
               
107-308
               

               
Cow position:
               
chr29:25837173-25836974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
64, 175
               

               
Conread position:
               
107-420
               

               
Cow position:
               
chr29:20594600-20594898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
221, 118
               

               
Conread position:
               
107-450
               

               
Cow position:
               
chr29:4103643-4103302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
63, 214
               

               
Conread position:
               
107-470
               

               
Cow position:
               
chr29:33520442-33520072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
218, 47
               

               
Conread position:
               
107-514
               

               
Cow position:
               
chr29:40618190-40617773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
219, 0
               

               
Conread position:
               
107-556
               

               
Cow position:
               
chr29:8415468-8415923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
120, 51
               

               
Conread position:
               
107-584
               

               
Cow position:
               
chr29:11321802-11321333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 169
               

               
Conread position:
               
107-590
               

               
Cow position:
               
chr29:24952227-24952710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
108-290
               

               
Cow position:
               
chr29:11433492-11433673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
108-307
               

               
Cow position:
               
chr29:984411-984607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 74
               

               
Conread position:
               
108-312
               

               
Cow position:
               
chr29:3539709-3539504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
71, 185
               

               
Conread position:
               
108-361
               

               
Cow position:
               
chr29:17227956-17228209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
108-376
               

               
Cow position:
               
chr29:5187236-5186971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 14
               

               
Conread position:
               
108-387
               

               
Cow position:
               
chr29:10674563-10674839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
108-410
               

               
Cow position:
               
chr29:31765820-31766123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 0
               

               
Conread position:
               
108-422
               

               
Cow position:
               
chr29:34806055-34805753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
217, 181
               

               
Conread position:
               
108-450
               

               
Cow position:
               
chr29:34535683-34535338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
108-489
               

               
Cow position:
               
chr29:18749034-18748658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 178
               

               
Conread position:
               
108-507
               

               
Cow position:
               
chr29:5977557-5977175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
219, 75
               

               
Conread position:
               
108-509
               

               
Cow position:
               
chr29:44009270-44008876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
108-514
               

               
Cow position:
               
chr29:6261766-6261371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
217, 72
               

               
Conread position:
               
108-514
               

               
Cow position:
               
chr29:9641701-9642121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 315
               

               
Conread position:
               
108-590
               

               
Cow position:
               
chr29:18212450-18211972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 117
               

               
Conread position:
               
108-590
               

               
Cow position:
               
chr29:29056725-29057201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
109-202
               

               
Cow position:
               
chr29:43321121-43321214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-263
               

               
Cow position:
               
chr29:7724450-7724605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
109-269
               

               
Cow position:
               
chr29:33599557-33599397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-273
               

               
Cow position:
               
chr29:6648814-6648977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
109-276
               

               
Cow position:
               
chr29:5233151-5233310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
109-280
               

               
Cow position:
               
chr29:2145359-2145188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-280
               

               
Cow position:
               
chr29:16042450-16042621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-281
               

               
Cow position:
               
chr29:10296959-10296787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-284
               

               
Cow position:
               
chr29:42939791-42939610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
109-287
               

               
Cow position:
               
chr29:9137846-9138029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
109-289
               

               
Cow position:
               
chr29:6871493-6871308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
109-290
               

               
Cow position:
               
chr29:17154029-17154214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
109-290
               

               
Cow position:
               
chr29:23348675-23348497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
109-290
               

               
Cow position:
               
chr29:24730728-24730555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
109-290
               

               
Cow position:
               
chr29:43517175-43516995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
109-291
               

               
Cow position:
               
chr29:20923317-20923130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
109-292
               

               
Cow position:
               
chr29:19251813-19251995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 58
               

               
Conread position:
               
109-295
               

               
Cow position:
               
chr29:21168060-21168245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
109-300
               

               
Cow position:
               
chr29:3501940-3502130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
58, 174
               

               
Conread position:
               
109-303
               

               
Cow position:
               
chr29:7848172-7848365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
109-313
               

               
Cow position:
               
chr29:15902742-15902541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
96, 80
               

               
Conread position:
               
109-313
               

               
Cow position:
               
chr29:29565559-29565355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-313
               

               
Cow position:
               
chr29:35738956-35738752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-313
               

               
Cow position:
               
chr29:42709227-42709023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-315
               

               
Cow position:
               
chr29:3549313-3549521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
109-315
               

               
Cow position:
               
chr29:5952420-5952210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
109-326
               

               
Cow position:
               
chr29:40157525-40157742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr29:527056-526838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr29:13923859-13924077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr29:18752014-18752232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr29:19547340-19547124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 135
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr29:32378352-32378570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr29:45463012-45463224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
109-329
               

               
Cow position:
               
chr29:15698676-15698456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-333
               

               
Cow position:
               
chr29:8681402-8681179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
137, 145
               

               
Conread position:
               
109-335
               

               
Cow position:
               
chr29:19891343-19891566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
217, 172
               

               
Conread position:
               
109-335
               

               
Cow position:
               
chr29:30069038-30069269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
67, 141
               

               
Conread position:
               
109-340
               

               
Cow position:
               
chr29:36428737-36428512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
109-344
               

               
Cow position:
               
chr29:3574818-3574585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
109-349
               

               
Cow position:
               
chr29:14372732-14372485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
109-354
               

               
Cow position:
               
chr29:18528189-18527939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 131
               

               
Conread position:
               
109-359
               

               
Cow position:
               
chr29:10154815-10155059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
109-365
               

               
Cow position:
               
chr29:8296078-8296338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 68
               

               
Conread position:
               
109-365
               

               
Cow position:
               
chr29:12875946-12876204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
65, 141
               

               
Conread position:
               
109-371
               

               
Cow position:
               
chr29:28656593-28656331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
217, 117
               

               
Conread position:
               
109-372
               

               
Cow position:
               
chr29:6774290-6774027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-377
               

               
Cow position:
               
chr29:37617703-37617967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
247, 174
               

               
Conread position:
               
109-378
               

               
Cow position:
               
chr29:23240063-23240330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 58
               

               
Conread position:
               
109-379
               

               
Cow position:
               
chr29:4084615-4084885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
60, 137
               

               
Conread position:
               
109-395
               

               
Cow position:
               
chr29:457498-457212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-397
               

               
Cow position:
               
chr29:15570315-15570604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-397
               

               
Cow position:
               
chr29:28100136-28100417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
60, 72
               

               
Conread position:
               
109-403
               

               
Cow position:
               
chr29:31505308-31505598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
231, 22
               

               
Conread position:
               
109-409
               

               
Cow position:
               
chr29:10031872-10031571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-409
               

               
Cow position:
               
chr29:10145696-10145395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-411
               

               
Cow position:
               
chr29:6150519-6150221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
57, 187
               

               
Conread position:
               
109-411
               

               
Cow position:
               
chr29:20244837-20245135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
290, 58
               

               
Conread position:
               
109-413
               

               
Cow position:
               
chr29:4537608-4537922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
73, 217
               

               
Conread position:
               
109-413
               

               
Cow position:
               
chr29:34734632-34734332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
109-414
               

               
Cow position:
               
chr29:8588956-8588651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
109-416
               

               
Cow position:
               
chr29:629184-629485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
182, 76
               

               
Conread position:
               
109-421
               

               
Cow position:
               
chr29:2136557-2136237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
109-422
               

               
Cow position:
               
chr29:15116748-15116432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 264
               

               
Conread position:
               
109-422
               

               
Cow position:
               
chr29:19857238-19857555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
96, 304
               

               
Conread position:
               
109-422
               

               
Cow position:
               
chr29:28578921-28579235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-422
               

               
Cow position:
               
chr29:30708000-30707686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-423
               

               
Cow position:
               
chr29:15755386-15755071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-423
               

               
Cow position:
               
chr29:37307484-37307163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 227
               

               
Conread position:
               
109-447
               

               
Cow position:
               
chr29:28621724-28621395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 89
               

               
Conread position:
               
109-447
               

               
Cow position:
               
chr29:34552000-34552336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 286
               

               
Conread position:
               
109-448
               

               
Cow position:
               
chr29:4220934-4221263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
218, 177
               

               
Conread position:
               
109-448
               

               
Cow position:
               
chr29:39075655-39075317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
109-450
               

               
Cow position:
               
chr29:5935740-5936079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-450
               

               
Cow position:
               
chr29:23988341-23988696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
83, 150
               

               
Conread position:
               
109-450
               

               
Cow position:
               
chr29:32942781-32943120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
109-451
               

               
Cow position:
               
chr29:13041011-13040667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 134
               

               
Conread position:
               
109-454
               

               
Cow position:
               
chr29:9463161-9462817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 233
               

               
Conread position:
               
109-462
               

               
Cow position:
               
chr29:39047881-39048234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-465
               

               
Cow position:
               
chr29:29065975-29066325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 154
               

               
Conread position:
               
109-469
               

               
Cow position:
               
chr29:16501433-16501788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
230, 291
               

               
Conread position:
               
109-469
               

               
Cow position:
               
chr29:35434418-35434779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 296
               

               
Conread position:
               
109-481
               

               
Cow position:
               
chr29:23980508-23980877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 296
               

               
Conread position:
               
109-488
               

               
Cow position:
               
chr29:16109906-16110285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-488
               

               
Cow position:
               
chr29:19925205-19924826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-488
               

               
Cow position:
               
chr29:24013282-24013661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-488
               

               
Cow position:
               
chr29:32516274-32516652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 62
               

               
Conread position:
               
109-488
               

               
Cow position:
               
chr29:35735839-35735460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-489
               

               
Cow position:
               
chr29:36633286-36632919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
339, 265
               

               
Conread position:
               
109-498
               

               
Cow position:
               
chr29:26263402-26263778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
109-503
               

               
Cow position:
               
chr29:18300266-18300660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-503
               

               
Cow position:
               
chr29:26130342-26130720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 50
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chr29:9717200-9717595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 70
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chr29:14611026-14611425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-506
               

               
Cow position:
               
chr29:32353376-32353774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-510
               

               
Cow position:
               
chr29:756855-756454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 262
               

               
Conread position:
               
109-511
               

               
Cow position:
               
chr29:2188800-2188401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 87
               

               
Conread position:
               
109-513
               

               
Cow position:
               
chr29:1688515-1688922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-513
               

               
Cow position:
               
chr29:5550549-5550954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 129
               

               
Conread position:
               
109-513
               

               
Cow position:
               
chr29:6414062-6414468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-513
               

               
Cow position:
               
chr29:45627110-45627510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
65, 172
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:292268-292675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:528741-528335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 25
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:606867-606460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:1743280-1743680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
290, 207
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:1911863-1911456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:1934012-1933604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 82
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:2402467-2402873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 196
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:2837510-2837104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 308
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:5426073-5425670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 76
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:6455426-6455833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 302
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:6935264-6935670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 106
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:7799360-7799765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:7811417-7811011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 177
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:8623455-8623053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 172
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:11696996-11697403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:13848387-13848000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
225, 114
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:16035617-16035208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 264
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:16065490-16065904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 261
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:16067133-16067539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:16152358-16152771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 121
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:16785458-16785865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:17077786-17078196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 145
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:17117480-17117882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
167, 266
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:19514558-19514159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 306
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:19619488-19619084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 97
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:20055192-20055599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
64, 70
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:20593512-20593918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 241
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:21231301-21230892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 70
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:22341293-22341700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:24659552-24659147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:24982790-24982384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 194
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:27702858-27703250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
340, 84
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:28696613-28696214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 114
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:32298505-32298912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:32317643-32318045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 124
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:32555966-32555562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 174
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:34793789-34793381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 235
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:34865368-34865775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:35076911-35077313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 215
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:35264587-35264181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 263
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:36007942-36008349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:38229781-38230184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 296
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:38271788-38272196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 171
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:38349580-38349177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 260
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:38409977-38410384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:38672312-38671904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 263
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:40498099-40497699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 336
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:43327576-43327976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
109-514
               

               
Cow position:
               
chr29:45208278-45208677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 159
               

               
Conread position:
               
109-518
               

               
Cow position:
               
chr29:15944120-15944525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 75
               

               
Conread position:
               
109-520
               

               
Cow position:
               
chr29:32644457-32644878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
77, 183
               

               
Conread position:
               
109-520
               

               
Cow position:
               
chr29:37719454-37719861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 221
               

               
Conread position:
               
109-525
               

               
Cow position:
               
chr29:11684549-11684968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 253
               

               
Conread position:
               
109-531
               

               
Cow position:
               
chr29:40337990-40337562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
109-534
               

               
Cow position:
               
chr29:34736905-34736498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
80, 156
               

               
Conread position:
               
109-535
               

               
Cow position:
               
chr29:734990-734565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 309
               

               
Conread position:
               
109-540
               

               
Cow position:
               
chr29:10225483-10225069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
74, 197
               

               
Conread position:
               
109-540
               

               
Cow position:
               
chr29:15401208-15400776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 250
               

               
Conread position:
               
109-541
               

               
Cow position:
               
chr29:2521127-2521564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 265
               

               
Conread position:
               
109-541
               

               
Cow position:
               
chr29:32963084-32963534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 314
               

               
Conread position:
               
109-543
               

               
Cow position:
               
chr29:10154244-10153808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
65, 127
               

               
Conread position:
               
109-543
               

               
Cow position:
               
chr29:21535143-21534697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
60, 119
               

               
Conread position:
               
109-548
               

               
Cow position:
               
chr29:34780204-34779763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 62
               

               
Conread position:
               
109-550
               

               
Cow position:
               
chr29:42807761-42808191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
216, 76
               

               
Conread position:
               
109-556
               

               
Cow position:
               
chr29:10819934-10819490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 177
               

               
Conread position:
               
109-558
               

               
Cow position:
               
chr29:2415259-2414820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 165
               

               
Conread position:
               
109-569
               

               
Cow position:
               
chr29:32800155-32799704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 26
               

               
Conread position:
               
109-572
               

               
Cow position:
               
chr29:4327044-4327496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 47
               

               
Conread position:
               
109-572
               

               
Cow position:
               
chr29:9079023-9078568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 100
               

               
Conread position:
               
109-573
               

               
Cow position:
               
chr29:15767845-15767383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-574
               

               
Cow position:
               
chr29:18011352-18011819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-575
               

               
Cow position:
               
chr29:11696082-11696537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 161
               

               
Conread position:
               
109-577
               

               
Cow position:
               
chr29:20014507-20014041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-578
               

               
Cow position:
               
chr29:24345917-24345437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 447
               

               
Conread position:
               
109-579
               

               
Cow position:
               
chr29:2589361-2588879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
58, 236
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chr29:7953610-7954083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chr29:11118931-11118458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chr29:12898339-12898812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chr29:13623593-13623120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-584
               

               
Cow position:
               
chr29:32329479-32329006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr29:727510-727981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 170
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr29:15965773-15965298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr29:16184998-16184524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr29:19338508-19339007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 315
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr29:19524360-19523886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr29:21475229-21475703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr29:26633743-26633269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-585
               

               
Cow position:
               
chr29:32292372-32292846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-587
               

               
Cow position:
               
chr29:3584576-3584090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 69
               

               
Conread position:
               
109-587
               

               
Cow position:
               
chr29:20429415-20428950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 58
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr29:2401135-2401612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr29:4611141-4611618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr29:10122556-10122080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 22
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr29:13027984-13028464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
285, 50
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr29:14569077-14569554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-588
               

               
Cow position:
               
chr29:15251630-15252107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 180
               

               
Conread position:
               
109-589
               

               
Cow position:
               
chr29:732174-732642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
381, 188
               

               
Conread position:
               
109-589
               

               
Cow position:
               
chr29:24578401-24578884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
109-589
               

               
Cow position:
               
chr29:36216669-36217136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
383, 26
               

               
Conread position:
               
109-589
               

               
Cow position:
               
chr29:41812026-41811566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
389, 174
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:17544-17085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 63
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:87464-86989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 32
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:649811-650306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 300
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:9638764-9638298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 290
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:12005217-12004740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 333
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:13553689-13554163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 187
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:18072476-18072966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 186
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:19428215-19428681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 177
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:32290151-32290631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 14
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:34746106-34745636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 281
               

               
Conread position:
               
109-590
               

               
Cow position:
               
chr29:40096513-40096990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
341, 215
               

               
Conread position:
               
109-593
               

               
Cow position:
               
chr29:11136339-11135869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
109-595
               

               
Cow position:
               
chr29:10156738-10156273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
384, 26
               

               
Conread position:
               
109-595
               

               
Cow position:
               
chr29:13639805-13639338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 83
               

               
Conread position:
               
109-595
               

               
Cow position:
               
chr29:22935835-22936299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
383, 104
               

               
Conread position:
               
109-595
               

               
Cow position:
               
chr29:40117102-40117601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 233
               

               
Conread position:
               
109-595
               

               
Cow position:
               
chr29:45006068-45005600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 0
               

               
Conread position:
               
109-596
               

               
Cow position:
               
chr29:3330363-3330850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 302
               

               
Conread position:
               
109-596
               

               
Cow position:
               
chr29:11703571-11704062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-596
               

               
Cow position:
               
chr29:21209714-21210201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-596
               

               
Cow position:
               
chr29:27928116-27927629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-598
               

               
Cow position:
               
chr29:26987112-26987599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-604
               

               
Cow position:
               
chr29:4620725-4621220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 262
               

               
Conread position:
               
109-615
               

               
Cow position:
               
chr29:465851-465349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 172
               

               
Conread position:
               
109-618
               

               
Cow position:
               
chr29:2744723-2744214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 33
               

               
Conread position:
               
109-630
               

               
Cow position:
               
chr29:19792718-19792214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 50
               

               
Conread position:
               
110-281
               

               
Cow position:
               
chr29:16187237-16187403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
110-290
               

               
Cow position:
               
chr29:37600346-37600160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
110-293
               

               
Cow position:
               
chr29:11309165-11308980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 111
               

               
Conread position:
               
110-297
               

               
Cow position:
               
chr29:4692268-4692078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 31
               

               
Conread position:
               
110-298
               

               
Cow position:
               
chr29:27858358-27858550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
110-306
               

               
Cow position:
               
chr29:2544075-2544271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-312
               

               
Cow position:
               
chr29:14050665-14050463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-313
               

               
Cow position:
               
chr29:44020089-44019895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
110-327
               

               
Cow position:
               
chr29:4519515-4519733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 71
               

               
Conread position:
               
110-327
               

               
Cow position:
               
chr29:13585986-13586203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-353
               

               
Cow position:
               
chr29:27694157-27693918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
182, 75
               

               
Conread position:
               
110-392
               

               
Cow position:
               
chr29:31943394-31943661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
224, 171
               

               
Conread position:
               
110-400
               

               
Cow position:
               
chr29:39332033-39331740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
57, 226
               

               
Conread position:
               
110-407
               

               
Cow position:
               
chr29:20710543-20710857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 84
               

               
Conread position:
               
110-409
               

               
Cow position:
               
chr29:15936713-15936414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
216, 120
               

               
Conread position:
               
110-413
               

               
Cow position:
               
chr29:3972997-3972697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 83
               

               
Conread position:
               
110-413
               

               
Cow position:
               
chr29:9332693-9333000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 0
               

               
Conread position:
               
110-413
               

               
Cow position:
               
chr29:15576509-15576203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 0
               

               
Conread position:
               
110-413
               

               
Cow position:
               
chr29:24121309-24121004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 59
               

               
Conread position:
               
110-421
               

               
Cow position:
               
chr29:14116593-14116905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
71, 81
               

               
Conread position:
               
110-422
               

               
Cow position:
               
chr29:6771529-6771854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
59, 142
               

               
Conread position:
               
110-422
               

               
Cow position:
               
chr29:16168487-16168177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
205, 96
               

               
Conread position:
               
110-448
               

               
Cow position:
               
chr29:38215098-38214758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
110-450
               

               
Cow position:
               
chr29:2298556-2298223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
110-450
               

               
Cow position:
               
chr29:22339677-22339329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
33, 191
               

               
Conread position:
               
110-450
               

               
Cow position:
               
chr29:43729619-43729956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
215, 118
               

               
Conread position:
               
110-470
               

               
Cow position:
               
chr29:13017841-13017478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 285
               

               
Conread position:
               
110-487
               

               
Cow position:
               
chr29:686642-686265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 279
               

               
Conread position:
               
110-488
               

               
Cow position:
               
chr29:9861318-9860942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 68
               

               
Conread position:
               
110-496
               

               
Cow position:
               
chr29:38910459-38910067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 299
               

               
Conread position:
               
110-503
               

               
Cow position:
               
chr29:26285480-26285098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 168
               

               
Conread position:
               
110-510
               

               
Cow position:
               
chr29:4201668-4202068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 295
               

               
Conread position:
               
110-510
               

               
Cow position:
               
chr29:13101690-13102083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
323, 170
               

               
Conread position:
               
110-510
               

               
Cow position:
               
chr29:20254945-20255347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 295
               

               
Conread position:
               
110-511
               

               
Cow position:
               
chr29:26161048-26160647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 176
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:1479232-1479638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 261
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:2103623-2104031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 295
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:7427359-7426955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 83
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:13128368-13127960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 0
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:16347992-16348395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
63, 71
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:16382403-16382808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 260
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:20213342-20213748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 261
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:25775499-25775089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 268
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:31185157-31185562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 156
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:38261709-38261301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 261
               

               
Conread position:
               
110-514
               

               
Cow position:
               
chr29:40014148-40013751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 51
               

               
Conread position:
               
110-519
               

               
Cow position:
               
chr29:5948248-5947838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 299
               

               
Conread position:
               
110-519
               

               
Cow position:
               
chr29:27007669-27008071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 51
               

               
Conread position:
               
110-520
               

               
Cow position:
               
chr29:961472-961880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
110-538
               

               
Cow position:
               
chr29:13107888-13108306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 15
               

               
Conread position:
               
110-555
               

               
Cow position:
               
chr29:21933584-21933126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 168
               

               
Conread position:
               
110-578
               

               
Cow position:
               
chr29:42771227-42771657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
110-584
               

               
Cow position:
               
chr29:26334836-26334371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
131, 148
               

               
Conread position:
               
110-588
               

               
Cow position:
               
chr29:18561248-18560774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 261
               

               
Conread position:
               
110-590
               

               
Cow position:
               
chr29:1021821-1022318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
159, 101
               

               
Conread position:
               
110-590
               

               
Cow position:
               
chr29:4120402-4120876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 93
               

               
Conread position:
               
110-590
               

               
Cow position:
               
chr29:16609289-16609770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 70
               

               
Conread position:
               
110-590
               

               
Cow position:
               
chr29:27833538-27834011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 50
               

               
Conread position:
               
110-590
               

               
Cow position:
               
chr29:39567238-39567708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 21
               

               
Conread position:
               
110-591
               

               
Cow position:
               
chr29:44902153-44901681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 246
               

               
Conread position:
               
110-595
               

               
Cow position:
               
chr29:6925567-6926038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 214
               

               
Conread position:
               
110-615
               

               
Cow position:
               
chr29:15738796-15738290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
111-254
               

               
Cow position:
               
chr29:5062707-5062850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-259
               

               
Cow position:
               
chr29:31594519-31594371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-271
               

               
Cow position:
               
chr29:40300417-40300257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-277
               

               
Cow position:
               
chr29:40762651-40762822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
111-281
               

               
Cow position:
               
chr29:2984406-2984575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
111-281
               

               
Cow position:
               
chr29:8667363-8667530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
111-290
               

               
Cow position:
               
chr29:4001968-4002147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
111-293
               

               
Cow position:
               
chr29:4164588-4164770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-295
               

               
Cow position:
               
chr29:44379077-44378893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-310
               

               
Cow position:
               
chr29:34774313-34774114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-318
               

               
Cow position:
               
chr29:16185885-16185678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-327
               

               
Cow position:
               
chr29:39214067-39213851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
111-412
               

               
Cow position:
               
chr29:25423387-25423676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 47
               

               
Conread position:
               
111-413
               

               
Cow position:
               
chr29:45762646-45762345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
298, 120
               

               
Conread position:
               
111-414
               

               
Cow position:
               
chr29:7290459-7290749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
213, 35
               

               
Conread position:
               
111-450
               

               
Cow position:
               
chr29:8512767-8513098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
111-465
               

               
Cow position:
               
chr29:18085125-18085492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 172
               

               
Conread position:
               
111-465
               

               
Cow position:
               
chr29:21665525-21665869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 172
               

               
Conread position:
               
111-466
               

               
Cow position:
               
chr29:16612408-16612051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
59, 187
               

               
Conread position:
               
111-484
               

               
Cow position:
               
chr29:19755997-19756365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 298
               

               
Conread position:
               
111-497
               

               
Cow position:
               
chr29:4058054-4058443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 255
               

               
Conread position:
               
111-510
               

               
Cow position:
               
chr29:45583255-45582867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
111-514
               

               
Cow position:
               
chr29:5238268-5238673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 248
               

               
Conread position:
               
111-514
               

               
Cow position:
               
chr29:5241178-5241583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 248
               

               
Conread position:
               
111-522
               

               
Cow position:
               
chr29:36586127-36586536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
111-535
               

               
Cow position:
               
chr29:6218010-6217577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
111-538
               

               
Cow position:
               
chr29:2694484-2694912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 297
               

               
Conread position:
               
111-573
               

               
Cow position:
               
chr29:40764119-40763675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 85
               

               
Conread position:
               
111-579
               

               
Cow position:
               
chr29:18364858-18364394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
166, 158
               

               
Conread position:
               
111-583
               

               
Cow position:
               
chr29:36530414-36530882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 138
               

               
Conread position:
               
111-589
               

               
Cow position:
               
chr29:4875355-4874862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
111-590
               

               
Cow position:
               
chr29:1324988-1325465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 216
               

               
Conread position:
               
111-590
               

               
Cow position:
               
chr29:21227758-21228235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 260
               

               
Conread position:
               
111-595
               

               
Cow position:
               
chr29:6775435-6774968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 133
               

               
Conread position:
               
111-595
               

               
Cow position:
               
chr29:19761825-19762300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 170
               

               
Conread position:
               
112-291
               

               
Cow position:
               
chr29:20903868-20903692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 154
               

               
Conread position:
               
112-364
               

               
Cow position:
               
chr29:39108893-39108638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
112-534
               

               
Cow position:
               
chr29:29547811-29548211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
64, 78
               

               
Conread position:
               
112-588
               

               
Cow position:
               
chr29:17408883-17409355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 161
               

               
Conread position:
               
112-588
               

               
Cow position:
               
chr29:26981054-26981508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
380, 159
               

               
Conread position:
               
112-589
               

               
Cow position:
               
chr29:17132068-17131598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 235
               

               
Conread position:
               
112-590
               

               
Cow position:
               
chr29:11365798-11366261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
31, 186
               

               
Conread position:
               
113-403
               

               
Cow position:
               
chr29:43499915-43499624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
212, 0
               

               
Conread position:
               
113-422
               

               
Cow position:
               
chr29:15808527-15808838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 259
               

               
Conread position:
               
113-490
               

               
Cow position:
               
chr29:32732886-32733242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 151
               

               
Conread position:
               
114-377
               

               
Cow position:
               
chr29:27588245-27588502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
220, 57
               

               
Conread position:
               
114-450
               

               
Cow position:
               
chr29:12956773-12956426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
69, 258
               

               
Conread position:
               
115-583
               

               
Cow position:
               
chr29:15941090-15940615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
115-585
               

               
Cow position:
               
chr29:8190927-8190445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
115-589
               

               
Cow position:
               
chr29:21197097-21196630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 284
               

               
Conread position:
               
116-293
               

               
Cow position:
               
chr29:6333102-6333279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
129, 137
               

               
Conread position:
               
116-293
               

               
Cow position:
               
chr29:6334341-6334518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
116-309
               

               
Cow position:
               
chr29:23112916-23113108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
116-560
               

               
Cow position:
               
chr29:20933261-20933698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 137
               

               
Conread position:
               
117-381
               

               
Cow position:
               
chr29:26415565-26415834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
50, 200
               

               
Conread position:
               
117-397
               

               
Cow position:
               
chr29:16939559-16939844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 72
               

               
Conread position:
               
117-461
               

               
Cow position:
               
chr29:27835777-27836112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
172, 72
               

               
Conread position:
               
117-548
               

               
Cow position:
               
chr29:42821342-42821773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 142
               

               
Conread position:
               
117-572
               

               
Cow position:
               
chr29:28506650-28507111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 111
               

               
Conread position:
               
117-590
               

               
Cow position:
               
chr29:29522848-29523312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
246, 31
               

               
Conread position:
               
118-248
               

               
Cow position:
               
chr29:16195386-16195515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
118-311
               

               
Cow position:
               
chr29:16012184-16011995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
118-403
               

               
Cow position:
               
chr29:45820684-45820410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
281, 30
               

               
Conread position:
               
119-289
               

               
Cow position:
               
chr29:11915092-11915262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
119-336
               

               
Cow position:
               
chr29:34957112-34957334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 190
               

               
Conread position:
               
119-382
               

               
Cow position:
               
chr29:21592261-21592522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
126, 247
               

               
Conread position:
               
119-495
               

               
Cow position:
               
chr29:5786486-5786861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 209
               

               
Conread position:
               
119-590
               

               
Cow position:
               
chr29:35291656-35292114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 267
               

               
Conread position:
               
120-447
               

               
Cow position:
               
chr29:8427044-8426729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
205, 32
               

               
Conread position:
               
120-514
               

               
Cow position:
               
chr29:23449042-23448638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 259
               

               
Conread position:
               
120-514
               

               
Cow position:
               
chr29:24728509-24728112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 251
               

               
Conread position:
               
120-525
               

               
Cow position:
               
chr29:44233384-44232989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 88
               

               
Conread position:
               
121-281
               

               
Cow position:
               
chr29:12222118-12221958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
120, 126
               

               
Conread position:
               
121-336
               

               
Cow position:
               
chr29:33549580-33549360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
123-569
               

               
Cow position:
               
chr29:4524422-4524857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 158
               

               
Conread position:
               
123-585
               

               
Cow position:
               
chr29:21428021-21427578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
326, 195
               

               
Conread position:
               
124-535
               

               
Cow position:
               
chr29:34390126-34389713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
45, 128
               

               
Conread position:
               
124-595
               

               
Cow position:
               
chr29:17606979-17607447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 281
               

               
Conread position:
               
124-595
               

               
Cow position:
               
chr29:25088298-25088773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 7
               

               
Conread position:
               
129-413
               

               
Cow position:
               
chr29:27000355-27000635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 38
               

               
Conread position:
               
130-284
               

               
Cow position:
               
chr29:29929366-29929520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
130-521
               

               
Cow position:
               
chr29:29477460-29477077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
195, 59
               

               
Conread position:
               
131-273
               

               
Cow position:
               
chr29:2263496-2263355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
131-281
               

               
Cow position:
               
chr29:2721143-2720995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
131-288
               

               
Cow position:
               
chr29:26128467-26128305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
131-290
               

               
Cow position:
               
chr29:868364-868529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 98
               

               
Conread position:
               
131-293
               

               
Cow position:
               
chr29:41183169-41183007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-303
               

               
Cow position:
               
chr29:18521480-18521303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
44, 28
               

               
Conread position:
               
131-309
               

               
Cow position:
               
chr29:34298178-34298003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
131-312
               

               
Cow position:
               
chr29:5109710-5109529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-316
               

               
Cow position:
               
chr29:21287306-21287489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 109
               

               
Conread position:
               
131-364
               

               
Cow position:
               
chr29:27872978-27873212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 156
               

               
Conread position:
               
131-413
               

               
Cow position:
               
chr29:8110285-8110012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
131-413
               

               
Cow position:
               
chr29:9864308-9864604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
39, 211
               

               
Conread position:
               
131-418
               

               
Cow position:
               
chr29:7560831-7560542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
131-448
               

               
Cow position:
               
chr29:26223897-26224225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 283
               

               
Conread position:
               
131-494
               

               
Cow position:
               
chr29:12309569-12309921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 77
               

               
Conread position:
               
131-505
               

               
Cow position:
               
chr29:32808170-32808536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 25
               

               
Conread position:
               
131-509
               

               
Cow position:
               
chr29:903502-903882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 274
               

               
Conread position:
               
131-513
               

               
Cow position:
               
chr29:43923-43538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 277
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr29:406694-406314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 273
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr29:2308850-2309228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 251
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr29:7865991-7865608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 49
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr29:8935055-8935440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 224
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr29:13590141-13589757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 233
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr29:16209578-16209194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr29:19398753-19399138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 274
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr29:19659625-19659997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
321, 182
               

               
Conread position:
               
131-514
               

               
Cow position:
               
chr29:32543920-32544305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 274
               

               
Conread position:
               
131-532
               

               
Cow position:
               
chr29:21528875-21529251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
195, 46
               

               
Conread position:
               
131-585
               

               
Cow position:
               
chr29:9977491-9977039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 212
               

               
Conread position:
               
131-585
               

               
Cow position:
               
chr29:42253941-42253489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
195, 240
               

               
Conread position:
               
131-590
               

               
Cow position:
               
chr29:28113691-28113250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
131-590
               

               
Cow position:
               
chr29:28775884-28775437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 142
               

               
Conread position:
               
131-595
               

               
Cow position:
               
chr29:17109542-17109989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 130
               

               
Conread position:
               
132-420
               

               
Cow position:
               
chr29:10846585-10846307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
194, 99
               

               
Conread position:
               
132-511
               

               
Cow position:
               
chr29:28990516-28990891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
132-580
               

               
Cow position:
               
chr29:4480603-4480158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 203
               

               
Conread position:
               
132-590
               

               
Cow position:
               
chr29:24623814-24624271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 57
               

               
Conread position:
               
133-320
               

               
Cow position:
               
chr29:40306428-40306241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
133-413
               

               
Cow position:
               
chr29:43692529-43692811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
195, 0
               

               
Conread position:
               
133-492
               

               
Cow position:
               
chr29:32308750-32308396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
199, 39
               

               
Conread position:
               
133-514
               

               
Cow position:
               
chr29:17794992-17795375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 272
               

               
Conread position:
               
133-542
               

               
Cow position:
               
chr29:26994837-26995243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
195, 163
               

               
Conread position:
               
133-569
               

               
Cow position:
               
chr29:35406213-35405788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 130
               

               
Conread position:
               
133-584
               

               
Cow position:
               
chr29:2483670-2483221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 238
               

               
Conread position:
               
133-584
               

               
Cow position:
               
chr29:13876616-13876167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 238
               

               
Conread position:
               
133-596
               

               
Cow position:
               
chr29:18724183-18723721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 71
               

               
Conread position:
               
134-278
               

               
Cow position:
               
chr29:42835429-42835573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
134-514
               

               
Cow position:
               
chr29:12189564-12189185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
191, 215
               

               
Conread position:
               
134-533
               

               
Cow position:
               
chr29:6635677-6636070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 255
               

               
Conread position:
               
135-317
               

               
Cow position:
               
chr29:26915753-26915935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
135-327
               

               
Cow position:
               
chr29:13903466-13903274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
135-461
               

               
Cow position:
               
chr29:12571011-12571336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 236
               

               
Conread position:
               
135-549
               

               
Cow position:
               
chr29:23119800-23119393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 17
               

               
Conread position:
               
135-566
               

               
Cow position:
               
chr29:35281077-35281496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 194
               

               
Conread position:
               
136-281
               

               
Cow position:
               
chr29:4218237-4218388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
136-514
               

               
Cow position:
               
chr29:35455394-35455014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 235
               

               
Conread position:
               
137-514
               

               
Cow position:
               
chr29:3460397-3460773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
137-514
               

               
Cow position:
               
chr29:10451999-10451610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
27, 360
               

               
Conread position:
               
137-514
               

               
Cow position:
               
chr29:17041227-17041600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 11
               

               
Conread position:
               
137-579
               

               
Cow position:
               
chr29:31786254-31786680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 249
               

               
Conread position:
               
138-575
               

               
Cow position:
               
chr29:26335804-26335364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
139-413
               

               
Cow position:
               
chr29:24260258-24259986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
186, 65
               

               
Conread position:
               
139-429
               

               
Cow position:
               
chr29:13127536-13127243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
139-458
               

               
Cow position:
               
chr29:32870809-32871134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 168
               

               
Conread position:
               
139-514
               

               
Cow position:
               
chr29:2463131-2462764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
34, 42
               

               
Conread position:
               
139-528
               

               
Cow position:
               
chr29:26017932-26017539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 68
               

               
Conread position:
               
139-572
               

               
Cow position:
               
chr29:28689188-28689618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 264
               

               
Conread position:
               
140-584
               

               
Cow position:
               
chr29:42413746-42414188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 231
               

               
Conread position:
               
141-365
               

               
Cow position:
               
chr29:18400203-18400434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
141-431
               

               
Cow position:
               
chr29:27005465-27005754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
274, 252
               

               
Conread position:
               
141-484
               

               
Cow position:
               
chr29:37485971-37486315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
341, 0
               

               
Conread position:
               
141-584
               

               
Cow position:
               
chr29:2484875-2485316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 202
               

               
Conread position:
               
141-588
               

               
Cow position:
               
chr29:5138813-5139263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 229
               

               
Conread position:
               
142-284
               

               
Cow position:
               
chr29:11072113-11071965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
143-525
               

               
Cow position:
               
chr29:20626169-20626537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
306, 62
               

               
Conread position:
               
143-581
               

               
Cow position:
               
chr29:17543031-17543457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
144-514
               

               
Cow position:
               
chr29:12610912-12611284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 259
               

               
Conread position:
               
144-588
               

               
Cow position:
               
chr29:25824531-25824972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
29, 35
               

               
Conread position:
               
144-594
               

               
Cow position:
               
chr29:35459175-35458745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
180, 46
               

               
Conread position:
               
146-590
               

               
Cow position:
               
chr29:18963322-18963757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
30, 141
               

               
Conread position:
               
147-565
               

               
Cow position:
               
chr29:8126008-8125591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 178
               

               
Conread position:
               
153-303
               

               
Cow position:
               
chr29:41076465-41076320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
154-506
               

               
Cow position:
               
chr29:23763510-23763156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
172, 217
               

               
Conread position:
               
154-514
               

               
Cow position:
               
chr29:32582093-32581727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
158, 221
               

               
Conread position:
               
155-274
               

               
Cow position:
               
chr29:2532722-2532841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-450
               

               
Cow position:
               
chr29:7750285-7749989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 180
               

               
Conread position:
               
155-512
               

               
Cow position:
               
chr29:18773010-18772647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
141, 22
               

               
Conread position:
               
155-514
               

               
Cow position:
               
chr29:37268138-37267779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
156-327
               

               
Cow position:
               
chr29:13853660-13853831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
156-404
               

               
Cow position:
               
chr29:40621334-40621087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
90, 7
               

               
Conread position:
               
157-507
               

               
Cow position:
               
chr29:28637463-28637119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
170, 38
               

               
Conread position:
               
157-514
               

               
Cow position:
               
chr29:10643299-10642940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
157-530
               

               
Cow position:
               
chr29:29550918-29551282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
157-590
               

               
Cow position:
               
chr29:23874054-23874482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
170, 27
               

               
Conread position:
               
158-404
               

               
Cow position:
               
chr29:15289342-15289584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
168, 74
               

               
Conread position:
               
158-595
               

               
Cow position:
               
chr29:28883677-28884110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 214
               

               
Conread position:
               
160-518
               

               
Cow position:
               
chr29:20674209-20673846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 248
               

               
Conread position:
               
162-422
               

               
Cow position:
               
chr29:34530041-34530300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
162-540
               

               
Cow position:
               
chr29:10267536-10267160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
328, 158
               

               
Conread position:
               
162-585
               

               
Cow position:
               
chr29:35502045-35501637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
163-579
               

               
Cow position:
               
chr29:11398324-11397915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
129, 35
               

               
Conread position:
               
167-457
               

               
Cow position:
               
chr29:29632331-29632041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
157, 232
               

               
Conread position:
               
167-519
               

               
Cow position:
               
chr29:29589308-29588960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
168-469
               

               
Cow position:
               
chr29:26290972-26290676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
168-590
               

               
Cow position:
               
chr29:28868237-28868661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 239
               

               
Conread position:
               
170-412
               

               
Cow position:
               
chr29:27846115-27846353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
158, 111
               

               
Conread position:
               
172-293
               

               
Cow position:
               
chr29:14484762-14484883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
172-387
               

               
Cow position:
               
chr29:28665412-28665626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
88, 110
               

               
Conread position:
               
172-409
               

               
Cow position:
               
chr29:2374391-2374155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
154, 6
               

               
Conread position:
               
172-450
               

               
Cow position:
               
chr29:1612959-1612687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
172-494
               

               
Cow position:
               
chr29:29504739-29504430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
172-517
               

               
Cow position:
               
chr29:16082730-16083082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
172-528
               

               
Cow position:
               
chr29:19124973-19125307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 5
               

               
Conread position:
               
172-572
               

               
Cow position:
               
chr29:31926680-31926285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
172-584
               

               
Cow position:
               
chr29:9911773-9912192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 226
               

               
Conread position:
               
172-584
               

               
Cow position:
               
chr29:10652951-10653358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
111, 28
               

               
Conread position:
               
172-588
               

               
Cow position:
               
chr29:15855404-15855814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
192, 6
               

               
Conread position:
               
172-590
               

               
Cow position:
               
chr29:12450996-12451402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
260, 122
               

               
Conread position:
               
173-296
               

               
Cow position:
               
chr29:32212832-32212710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
173-327
               

               
Cow position:
               
chr29:32349697-32349543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
173-450
               

               
Cow position:
               
chr29:40330384-40330660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
153, 198
               

               
Conread position:
               
173-491
               

               
Cow position:
               
chr29:14888733-14889050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 178
               

               
Conread position:
               
173-513
               

               
Cow position:
               
chr29:3282309-3282645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
152, 217
               

               
Conread position:
               
175-409
               

               
Cow position:
               
chr29:26346251-26346487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
129, 50
               

               
Conread position:
               
176-595
               

               
Cow position:
               
chr29:26616121-26615691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 243
               

               
Conread position:
               
176-595
               

               
Cow position:
               
chr29:28197393-28196979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 223
               

               
Conread position:
               
178-535
               

               
Cow position:
               
chr29:7041217-7040873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 77
               

               
Conread position:
               
179-304
               

               
Cow position:
               
chr29:26470633-26470508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
179-556
               

               
Cow position:
               
chr29:43080990-43080635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
145, 115
               

               
Conread position:
               
180-510
               

               
Cow position:
               
chr29:35075604-35075272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
142, 192
               

               
Conread position:
               
180-514
               

               
Cow position:
               
chr29:19386039-19386375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
146, 191
               

               
Conread position:
               
180-514
               

               
Cow position:
               
chr29:24304193-24304529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
146, 191
               

               
Conread position:
               
180-514
               

               
Cow position:
               
chr29:24305099-24304764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
146, 191
               

               
Conread position:
               
180-514
               

               
Cow position:
               
chr29:25695694-25695361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
145, 225
               

               
Conread position:
               
180-514
               

               
Cow position:
               
chr29:40656307-40656647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
116, 230
               

               
Conread position:
               
181-413
               

               
Cow position:
               
chr29:20308089-20308326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
182-397
               

               
Cow position:
               
chr29:20642337-20642554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 146
               

               
Conread position:
               
182-450
               

               
Cow position:
               
chr29:2715758-2716020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
57, 66
               

               
Conread position:
               
182-469
               

               
Cow position:
               
chr29:15828601-15828317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
267, 222
               

               
Conread position:
               
183-397
               

               
Cow position:
               
chr29:23703220-23703006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
142, 100
               

               
Conread position:
               
183-585
               

               
Cow position:
               
chr29:26771048-26771455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
78, 209
               

               
Conread position:
               
184-590
               

               
Cow position:
               
chr29:1307239-1306838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 6
               

               
Conread position:
               
185-315
               

               
Cow position:
               
chr29:14500698-14500827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
185-331
               

               
Cow position:
               
chr29:6194365-6194218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
185-440
               

               
Cow position:
               
chr29:10200546-10200802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
141, 186
               

               
Conread position:
               
185-535
               

               
Cow position:
               
chr29:30433305-30433656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
140, 70
               

               
Conread position:
               
185-578
               

               
Cow position:
               
chr29:3704573-3704188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 6
               

               
Conread position:
               
185-584
               

               
Cow position:
               
chr29:34293545-34293148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
141, 186
               

               
Conread position:
               
185-585
               

               
Cow position:
               
chr29:43328262-43328661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 48
               

               
Conread position:
               
186-322
               

               
Cow position:
               
chr29:11563179-11563042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
186-452
               

               
Cow position:
               
chr29:36193043-36192782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
140, 213
               

               
Conread position:
               
186-464
               

               
Cow position:
               
chr29:40894566-40894832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
186-534
               

               
Cow position:
               
chr29:856778-856442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
263, 187
               

               
Conread position:
               
186-635
               

               
Cow position:
               
chr29:35484870-35485313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 51
               

               
Conread position:
               
187-585
               

               
Cow position:
               
chr29:21237086-21237481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
139, 59
               

               
Conread position:
               
189-575
               

               
Cow position:
               
chr29:28195891-28195508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
193-358
               

               
Cow position:
               
chr29:28503725-28503890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
193-453
               

               
Cow position:
               
chr29:11334864-11334606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
144, 215
               

               
Conread position:
               
193-577
               

               
Cow position:
               
chr29:38581601-38581990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 150
               

               
Conread position:
               
193-584
               

               
Cow position:
               
chr29:20462985-20462597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
134, 206
               

               
Conread position:
               
194-494
               

               
Cow position:
               
chr29:29530696-29530990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
202, 0
               

               
Conread position:
               
195-376
               

               
Cow position:
               
chr29:44598189-44598004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
195-566
               

               
Cow position:
               
chr29:6014726-6015122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 173
               

               
Conread position:
               
195-579
               

               
Cow position:
               
chr29:30812364-30812763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 195
               

               
Conread position:
               
196-415
               

               
Cow position:
               
chr29:561467-561689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
130, 175
               

               
Conread position:
               
196-450
               

               
Cow position:
               
chr29:13403299-13403552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
11, 209
               

               
Conread position:
               
196-588
               

               
Cow position:
               
chr29:24945350-24944961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
130, 175
               

               
Conread position:
               
197-488
               

               
Cow position:
               
chr29:18781502-18781788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 128
               

               
Conread position:
               
198-492
               

               
Cow position:
               
chr29:26519822-26519535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
129, 46
               

               
Conread position:
               
198-586
               

               
Cow position:
               
chr29:16175634-16175254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 164
               

               
Conread position:
               
199-514
               

               
Cow position:
               
chr29:16694062-16694368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
141, 67
               

               
Conread position:
               
199-585
               

               
Cow position:
               
chr29:21619806-21619422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
125, 172
               

               
Conread position:
               
200-514
               

               
Cow position:
               
chr29:45624621-45624313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 51
               

               
Conread position:
               
201-569
               

               
Cow position:
               
chr29:37785546-37785171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
98, 90
               

               
Conread position:
               
202-450
               

               
Cow position:
               
chr29:4890961-4890709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
73, 204
               

               
Conread position:
               
203-461
               

               
Cow position:
               
chr29:15041847-15042095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
248, 18
               

               
Conread position:
               
204-327
               

               
Cow position:
               
chr29:15257859-15257982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
204-413
               

               
Cow position:
               
chr29:8493141-8492934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
204-578
               

               
Cow position:
               
chr29:19508590-19508964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
204-590
               

               
Cow position:
               
chr29:40583440-40583815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
205-567
               

               
Cow position:
               
chr29:12798576-12798920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
120, 98
               

               
Conread position:
               
209-514
               

               
Cow position:
               
chr29:30028783-30028476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 196
               

               
Conread position:
               
209-520
               

               
Cow position:
               
chr29:296179-295866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
93, 175
               

               
Conread position:
               
209-584
               

               
Cow position:
               
chr29:39425133-39425506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
117, 162
               

               
Conread position:
               
209-589
               

               
Cow position:
               
chr29:42848878-42849246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
115, 66
               

               
Conread position:
               
209-590
               

               
Cow position:
               
chr29:6293816-6293456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
238, 75
               

               
Conread position:
               
210-451
               

               
Cow position:
               
chr29:23541613-23541373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
115, 161
               

               
Conread position:
               
211-481
               

               
Cow position:
               
chr29:40903069-40902805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
211-514
               

               
Cow position:
               
chr29:17773590-17773896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 161
               

               
Conread position:
               
211-590
               

               
Cow position:
               
chr29:9686359-9685985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 181
               

               
Conread position:
               
212-417
               

               
Cow position:
               
chr29:8968770-8968973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
113, 178
               

               
Conread position:
               
214-387
               

               
Cow position:
               
chr29:26415754-26415928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
214-470
               

               
Cow position:
               
chr29:37470921-37470660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
13, 195
               

               
Conread position:
               
214-514
               

               
Cow position:
               
chr29:28047538-28047237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
112, 157
               

               
Conread position:
               
214-542
               

               
Cow position:
               
chr29:18338892-18338561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
116, 77
               

               
Conread position:
               
214-595
               

               
Cow position:
               
chr29:29974697-29975067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 51
               

               
Conread position:
               
215-585
               

               
Cow position:
               
chr29:25958046-25957678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
111, 156
               

               
Conread position:
               
216-382
               

               
Cow position:
               
chr29:31899365-31899201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
216-584
               

               
Cow position:
               
chr29:5892505-5892861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 70
               

               
Conread position:
               
216-585
               

               
Cow position:
               
chr29:21640068-21639700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
110, 155
               

               
Conread position:
               
217-451
               

               
Cow position:
               
chr29:38858886-38859119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 192
               

               
Conread position:
               
218-466
               

               
Cow position:
               
chr29:5897072-5896824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
121, 218
               

               
Conread position:
               
218-514
               

               
Cow position:
               
chr29:35300385-35300683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
108, 153
               

               
Conread position:
               
219-376
               

               
Cow position:
               
chr29:41347209-41347363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
219-585
               

               
Cow position:
               
chr29:16171034-16170674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
220-532
               

               
Cow position:
               
chr29:35630754-35630442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
106, 61
               

               
Conread position:
               
220-534
               

               
Cow position:
               
chr29:37292432-37292750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
73, 26
               

               
Conread position:
               
221-460
               

               
Cow position:
               
chr29:36356514-36356742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
109, 64
               

               
Conread position:
               
221-578
               

               
Cow position:
               
chr29:40892054-40891686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
79, 198
               

               
Conread position:
               
222-513
               

               
Cow position:
               
chr29:30696003-30695715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 151
               

               
Conread position:
               
225-585
               

               
Cow position:
               
chr29:9709363-9709712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 157
               

               
Conread position:
               
226-445
               

               
Cow position:
               
chr29:1582960-1582744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
226-587
               

               
Cow position:
               
chr29:7408225-7407866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
27, 180
               

               
Conread position:
               
226-595
               

               
Cow position:
               
chr29:10058862-10058506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
229-525
               

               
Cow position:
               
chr29:36037380-36037663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
225, 100
               

               
Conread position:
               
232-525
               

               
Cow position:
               
chr29:19907031-19907317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
110, 51
               

               
Conread position:
               
234-406
               

               
Cow position:
               
chr29:26559844-26559675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 48
               

               
Conread position:
               
234-534
               

               
Cow position:
               
chr29:10838624-10838920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
235-583
               

               
Cow position:
               
chr29:43312121-43311777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
259, 175
               

               
Conread position:
               
235-585
               

               
Cow position:
               
chr29:27976568-27976221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
91, 68
               

               
Conread position:
               
235-588
               

               
Cow position:
               
chr29:18603873-18603522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 136
               

               
Conread position:
               
235-589
               

               
Cow position:
               
chr29:20178456-20178113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
57, 178
               

               
Conread position:
               
235-589
               

               
Cow position:
               
chr29:28273711-28273367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
237-584
               

               
Cow position:
               
chr29:1445700-1446045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 134
               

               
Conread position:
               
238-517
               

               
Cow position:
               
chr29:14207345-14207064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
87, 167
               

               
Conread position:
               
238-595
               

               
Cow position:
               
chr29:16657368-16657719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
207, 91
               

               
Conread position:
               
241-514
               

               
Cow position:
               
chr29:13391189-13390914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
85, 130
               

               
Conread position:
               
241-514
               

               
Cow position:
               
chr29:43195673-43195944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 130
               

               
Conread position:
               
241-585
               

               
Cow position:
               
chr29:3782804-3782463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 130
               

               
Conread position:
               
241-590
               

               
Cow position:
               
chr29:32521543-32521896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 162
               

               
Conread position:
               
244-585
               

               
Cow position:
               
chr29:22021102-22020765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
82, 127
               

               
Conread position:
               
246-595
               

               
Cow position:
               
chr29:4328119-4328443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 101
               

               
Conread position:
               
247-513
               

               
Cow position:
               
chr29:8630388-8630124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 159
               

               
Conread position:
               
247-584
               

               
Cow position:
               
chr29:2490579-2490914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 124
               

               
Conread position:
               
247-585
               

               
Cow position:
               
chr29:21478628-21478292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 124
               

               
Conread position:
               
248-590
               

               
Cow position:
               
chr29:2071881-2071550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
204, 146
               

               
Conread position:
               
248-590
               

               
Cow position:
               
chr29:13372353-13372686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
249-521
               

               
Cow position:
               
chr29:8164175-8163901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 158
               

               
Conread position:
               
249-533
               

               
Cow position:
               
chr29:2644620-2644334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
47, 38
               

               
Conread position:
               
251-422
               

               
Cow position:
               
chr29:14892267-14892097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 157
               

               
Conread position:
               
251-506
               

               
Cow position:
               
chr29:39446463-39446206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 120
               

               
Conread position:
               
251-514
               

               
Cow position:
               
chr29:24650675-24650410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
74, 154
               

               
Conread position:
               
251-583
               

               
Cow position:
               
chr29:10456862-10456547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 138
               

               
Conread position:
               
252-581
               

               
Cow position:
               
chr29:7848417-7848742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
88, 77
               

               
Conread position:
               
252-590
               

               
Cow position:
               
chr29:4625302-4624974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
74, 125
               

               
Conread position:
               
253-483
               

               
Cow position:
               
chr29:22720823-22721049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
195, 27
               

               
Conread position:
               
256-575
               

               
Cow position:
               
chr29:26734728-26735036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 134
               

               
Conread position:
               
258-378
               

               
Cow position:
               
chr29:5175341-5175461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 100
               

               
Conread position:
               
258-514
               

               
Cow position:
               
chr29:35403848-35403590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
259-471
               

               
Cow position:
               
chr29:38760453-38760252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
68, 40
               

               
Conread position:
               
259-590
               

               
Cow position:
               
chr29:17222105-17222435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
16, 6
               

               
Conread position:
               
264-590
               

               
Cow position:
               
chr29:45589882-45589566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
43, 120
               

               
Conread position:
               
264-595
               

               
Cow position:
               
chr29:21000345-21000666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
265-521
               

               
Cow position:
               
chr29:477809-478061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
265-590
               

               
Cow position:
               
chr29:37961268-37960952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
91, 41
               

               
Conread position:
               
266-510
               

               
Cow position:
               
chr29:18877951-18878198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
98, 104
               

               
Conread position:
               
266-514
               

               
Cow position:
               
chr29:14107330-14107084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
98, 63
               

               
Conread position:
               
266-584
               

               
Cow position:
               
chr29:15841404-15841720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
268-490
               

               
Cow position:
               
chr29:43252980-43252762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
187, 121
               

               
Conread position:
               
269-535
               

               
Cow position:
               
chr29:6844921-6844658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
179, 119
               

               
Conread position:
               
269-595
               

               
Cow position:
               
chr29:22162549-22162220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 137
               

               
Conread position:
               
270-565
               

               
Cow position:
               
chr29:3395822-3396105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
270-588
               

               
Cow position:
               
chr29:9917674-9917358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
56, 101
               

               
Conread position:
               
271-498
               

               
Cow position:
               
chr29:36329188-36329419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 142
               

               
Conread position:
               
272-590
               

               
Cow position:
               
chr29:699898-699593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
182, 45
               

               
Conread position:
               
274-587
               

               
Cow position:
               
chr29:42364301-42363997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
274-589
               

               
Cow position:
               
chr29:750185-749884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
174, 50
               

               
Conread position:
               
274-595
               

               
Cow position:
               
chr29:5099051-5098737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
18, 12
               

               
Conread position:
               
276-449
               

               
Cow position:
               
chr29:45588760-45588590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
277-590
               

               
Cow position:
               
chr29:2522292-2522587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
8, 98
               

               
Conread position:
               
277-590
               

               
Cow position:
               
chr29:24604433-24604114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
278-514
               

               
Cow position:
               
chr29:24033513-24033752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 128
               

               
Conread position:
               
278-591
               

               
Cow position:
               
chr29:3502776-3503079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
279-503
               

               
Cow position:
               
chr29:34360077-34359864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 79
               

               
Conread position:
               
279-580
               

               
Cow position:
               
chr29:479104-479396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 124
               

               
Conread position:
               
283-492
               

               
Cow position:
               
chr29:17135573-17135772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
283-583
               

               
Cow position:
               
chr29:39111586-39111296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
47, 91
               

               
Conread position:
               
283-590
               

               
Cow position:
               
chr29:14501316-14501615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
171, 45
               

               
Conread position:
               
284-590
               

               
Cow position:
               
chr29:29558714-29558411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
128, 13
               

               
Conread position:
               
286-466
               

               
Cow position:
               
chr29:2263302-2263122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
6, 114
               

               
Conread position:
               
286-522
               

               
Cow position:
               
chr29:4065814-4066044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
28, 6
               

               
Conread position:
               
286-544
               

               
Cow position:
               
chr29:18878776-18878516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 40
               

               
Conread position:
               
286-560
               

               
Cow position:
               
chr29:35636149-35636424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
52, 113
               

               
Conread position:
               
287-514
               

               
Cow position:
               
chr29:4043133-4043362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
287-514
               

               
Cow position:
               
chr29:10627902-10627673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
41, 118
               

               
Conread position:
               
287-586
               

               
Cow position:
               
chr29:4647260-4646976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
161, 89
               

               
Conread position:
               
289-487
               

               
Cow position:
               
chr29:13458792-13458980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
159, 10
               

               
Conread position:
               
291-539
               

               
Cow position:
               
chr29:41076300-41076055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 125
               

               
Conread position:
               
291-580
               

               
Cow position:
               
chr29:9139138-9139434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 114
               

               
Conread position:
               
291-590
               

               
Cow position:
               
chr29:41530580-41530872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
201, 107
               

               
Conread position:
               
291-595
               

               
Cow position:
               
chr29:40165972-40166273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
292-594
               

               
Cow position:
               
chr29:26673172-26672883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
293-580
               

               
Cow position:
               
chr29:11634554-11634834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
47, 86
               

               
Conread position:
               
293-581
               

               
Cow position:
               
chr29:21682777-21682504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
156, 36
               

               
Conread position:
               
293-587
               

               
Cow position:
               
chr29:2623748-2623460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
37, 105
               

               
Conread position:
               
293-590
               

               
Cow position:
               
chr29:18694989-18695275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 112
               

               
Conread position:
               
293-590
               

               
Cow position:
               
chr29:26129231-26129521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
181, 75
               

               
Conread position:
               
293-595
               

               
Cow position:
               
chr29:12679886-12680185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
293-595
               

               
Cow position:
               
chr29:12784224-12783931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
293-595
               

               
Cow position:
               
chr29:16195584-16195869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
34, 102
               

               
Conread position:
               
295-591
               

               
Cow position:
               
chr29:109444-109719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
287, 103
               

               
Conread position:
               
296-590
               

               
Cow position:
               
chr29:44236203-44236475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
212, 33
               

               
Conread position:
               
297-590
               

               
Cow position:
               
chr29:94809-94535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
151, 28
               

               
Conread position:
               
298-585
               

               
Cow position:
               
chr29:37599467-37599191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
153, 100
               

               
Conread position:
               
299-531
               

               
Cow position:
               
chr29:22175431-22175654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
300-595
               

               
Cow position:
               
chr29:22613174-22613459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
196, 25
               

               
Conread position:
               
301-521
               

               
Cow position:
               
chr29:4804973-4805189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 98
               

               
Conread position:
               
301-528
               

               
Cow position:
               
chr29:21236856-21237079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
301-531
               

               
Cow position:
               
chr29:19389226-19389454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
301-532
               

               
Cow position:
               
chr29:5919585-5919356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
301-590
               

               
Cow position:
               
chr29:29302914-29302636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
302-585
               

               
Cow position:
               
chr29:35738529-35738255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
28, 126
               

               
Conread position:
               
302-595
               

               
Cow position:
               
chr29:29769605-29769322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
305-590
               

               
Cow position:
               
chr29:356070-356343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
306-481
               

               
Cow position:
               
chr29:27009163-27009337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 117
               

               
Conread position:
               
306-577
               

               
Cow position:
               
chr29:4194376-4194097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
306-588
               

               
Cow position:
               
chr29:2984632-2984911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
142, 28
               

               
Conread position:
               
306-589
               

               
Cow position:
               
chr29:8926714-8926440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
306-590
               

               
Cow position:
               
chr29:34297820-34297546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
24, 93
               

               
Conread position:
               
306-595
               

               
Cow position:
               
chr29:31928724-31929018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
307-447
               

               
Cow position:
               
chr29:30227410-30227548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
307-590
               

               
Cow position:
               
chr29:8669101-8669388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
18, 237
               

               
Conread position:
               
308-563
               

               
Cow position:
               
chr29:585029-585271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
308-590
               

               
Cow position:
               
chr29:26298729-26298997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
308-636
               

               
Cow position:
               
chr29:16756802-16757117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
141, 96
               

               
Conread position:
               
309-595
               

               
Cow position:
               
chr29:1556680-1556960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
310-595
               

               
Cow position:
               
chr29:11562363-11562642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
311-541
               

               
Cow position:
               
chr29:18735893-18735662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 94
               

               
Conread position:
               
311-590
               

               
Cow position:
               
chr29:11915567-11915849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
15, 7
               

               
Conread position:
               
312-520
               

               
Cow position:
               
chr29:16359364-16359571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 63
               

               
Conread position:
               
313-541
               

               
Cow position:
               
chr29:40852688-40852905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
195, 12
               

               
Conread position:
               
313-584
               

               
Cow position:
               
chr29:23984212-23983939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
17, 93
               

               
Conread position:
               
314-589
               

               
Cow position:
               
chr29:44378665-44378393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
49, 56
               

               
Conread position:
               
314-590
               

               
Cow position:
               
chr29:3502309-3502593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
16, 151
               

               
Conread position:
               
314-590
               

               
Cow position:
               
chr29:36183029-36183303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
103, 58
               

               
Conread position:
               
314-595
               

               
Cow position:
               
chr29:25737664-25737385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
315-590
               

               
Cow position:
               
chr29:20903534-20903268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
318-649
               

               
Cow position:
               
chr29:41747197-41747533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 81
               

               
Conread position:
               
319-590
               

               
Cow position:
               
chr29:25474665-25474945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 86
               

               
Conread position:
               
320-590
               

               
Cow position:
               
chr29:24119978-24119718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
322-541
               

               
Cow position:
               
chr29:23697740-23697958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
127, 76
               

               
Conread position:
               
322-595
               

               
Cow position:
               
chr29:23844593-23844867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 82
               

               
Conread position:
               
325-577
               

               
Cow position:
               
chr29:24103784-24103530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 82
               

               
Conread position:
               
325-583
               

               
Cow position:
               
chr29:34773963-34773722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
167, 52
               

               
Conread position:
               
325-590
               

               
Cow position:
               
chr29:4520100-4520362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 76
               

               
Conread position:
               
325-590
               

               
Cow position:
               
chr29:16309515-16309765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
180, 63
               

               
Conread position:
               
325-590
               

               
Cow position:
               
chr29:19949074-19949332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 62
               

               
Conread position:
               
325-595
               

               
Cow position:
               
chr29:11704887-11705148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
165, 73
               

               
Conread position:
               
325-595
               

               
Cow position:
               
chr29:22714963-22714694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
167, 80
               

               
Conread position:
               
326-589
               

               
Cow position:
               
chr29:34744851-34744599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
128, 76
               

               
Conread position:
               
326-590
               

               
Cow position:
               
chr29:1395372-1395619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
330-590
               

               
Cow position:
               
chr29:868542-868797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
117, 68
               

               
Conread position:
               
330-590
               

               
Cow position:
               
chr29:6286389-6286139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
330-590
               

               
Cow position:
               
chr29:39642946-39643198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
86, 65
               

               
Conread position:
               
334-590
               

               
Cow position:
               
chr29:38580751-38581002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
171, 9
               

               
Conread position:
               
335-590
               

               
Cow position:
               
chr29:1229383-1229629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
113, 47
               

               
Conread position:
               
336-584
               

               
Cow position:
               
chr29:26985004-26985243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
158, 20
               

               
Conread position:
               
338-590
               

               
Cow position:
               
chr29:2532839-2533081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
340-556
               

               
Cow position:
               
chr29:5109431-5109214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
340-590
               

               
Cow position:
               
chr29:463874-463632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
114, 58
               

               
Conread position:
               
343-595
               

               
Cow position:
               
chr29:28446477-28446224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
150, 62
               

               
Conread position:
               
344-590
               

               
Cow position:
               
chr29:31489103-31489341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
148, 45
               

               
Conread position:
               
345-590
               

               
Cow position:
               
chr29:28166433-28166196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
49, 63
               

               
Conread position:
               
347-590
               

               
Cow position:
               
chr29:22778395-22778153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
348-643
               

               
Cow position:
               
chr29:6337450-6337739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
101, 53
               

               
Conread position:
               
357-586
               

               
Cow position:
               
chr29:41364906-41365129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
358-578
               

               
Cow position:
               
chr29:43009287-43009074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
134, 47
               

               
Conread position:
               
361-616
               

               
Cow position:
               
chr29:10818636-10818388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
133, 54
               

               
Conread position:
               
368-574
               

               
Cow position:
               
chr29:25091917-25092120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
124, 5
               

               
Conread position:
               
368-593
               

               
Cow position:
               
chr29:9718965-9718742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 37
               

               
Conread position:
               
368-609
               

               
Cow position:
               
chr29:30188533-30188297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
369-595
               

               
Cow position:
               
chr29:32211251-32211038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
222, 38
               

               
Conread position:
               
370-589
               

               
Cow position:
               
chr29:5186689-5186472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
122, 35
               

               
Conread position:
               
372-590
               

               
Cow position:
               
chr29:4334539-4334748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
377-590
               

               
Cow position:
               
chr29:17301341-17301556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
115, 43
               

               
Conread position:
               
378-595
               

               
Cow position:
               
chr29:31674444-31674662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
17, 10
               

               
Conread position:
               
389-590
               

               
Cow position:
               
chr29:12025648-12025445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
394-590
               

               
Cow position:
               
chr29:44682267-44682082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
394-593
               

               
Cow position:
               
chr29:27826355-27826550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
400-590
               

               
Cow position:
               
chr29:11054027-11053837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 147
               

               
Conread position:
               
403-580
               

               
Cow position:
               
chr29:27588760-27588935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
405-590
               

               
Cow position:
               
chr29:24252077-24252260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 134
               

               
Conread position:
               
406-595
               

               
Cow position:
               
chr29:1124495-1124684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
87, 127
               

               
Conread position:
               
413-595
               

               
Cow position:
               
chr29:29314808-29314623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
79, 116
               

               
Conread position:
               
414-595
               

               
Cow position:
               
chr29:23244032-23243849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
80, 129
               

               
Conread position:
               
428-585
               

               
Cow position:
               
chr29:18580153-18579993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
428-589
               

               
Cow position:
               
chr29:27329754-27329914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
428-595
               

               
Cow position:
               
chr29:31594268-31594098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
67, 115
               

               
Conread position:
               
434-595
               

               
Cow position:
               
chr29:29176747-29176587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
56, 95
               

               
Conread position:
               
437-595
               

               
Cow position:
               
chr29:34359109-34358949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
57, 88
               
Show alignments to all cow chromosomes.