Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022G06.3 |
| Conread position: | 113-656 |
| Cow position: | chr12:14661994-14661446 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 125-630 |
| Cow position: | chr12:22205108-22204589 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 267 |
| Conread position: | 125-707 |
| Cow position: | chr12:6406011-6405406 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 125-720 |
| Cow position: | chr12:25100423-25099825 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 273 |
| Conread position: | 135-548 |
| Cow position: | chr12:35314013-35313610 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 135-695 |
| Cow position: | chr12:21428502-21429089 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 388 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 135-720 |
| Cow position: | chr12:3361569-3362188 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 135-720 |
| Cow position: | chr12:43030744-43030134 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 158-415 |
| Cow position: | chr12:21226297-21226036 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 123 |
| Conread position: | 158-446 |
| Cow position: | chr12:10485726-10486012 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 161-713 |
| Cow position: | chr12:8139428-8138875 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 363 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 37, 8 |
| Conread position: | 162-700 |
| Cow position: | chr12:36449253-36449793 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 162-716 |
| Cow position: | chr12:36367511-36368072 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 164-424 |
| Cow position: | chr12:28765341-28765073 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 164-646 |
| Cow position: | chr12:20997419-20996913 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 331 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 231 |
| Conread position: | 164-697 |
| Cow position: | chr12:1403171-1403718 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 164-707 |
| Cow position: | chr12:600679-600130 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 201 |
| Conread position: | 164-707 |
| Cow position: | chr12:42858859-42858301 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 164-710 |
| Cow position: | chr12:32063797-32064330 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 164-720 |
| Cow position: | chr12:8677423-8676851 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 181 |
| Conread position: | 164-720 |
| Cow position: | chr12:11098914-11099470 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 119 |
| Conread position: | 168-646 |
| Cow position: | chr12:25554691-25554192 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 171-470 |
| Cow position: | chr12:21254029-21253722 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 171-588 |
| Cow position: | chr12:41380364-41380791 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 218 |
| Conread position: | 172-522 |
| Cow position: | chr12:3504715-3505063 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 223, 25 |
| Conread position: | 179-376 |
| Cow position: | chr12:4158069-4158272 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 181-481 |
| Cow position: | chr12:36427927-36428221 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 181-481 |
| Cow position: | chr12:36479865-36480156 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 181-597 |
| Cow position: | chr12:22216595-22216179 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 181-697 |
| Cow position: | chr12:27855271-27854738 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 213 |
| Conread position: | 181-697 |
| Cow position: | chr12:27932211-27931678 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 181-719 |
| Cow position: | chr12:17979430-17979970 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 136 |
| Conread position: | 186-615 |
| Cow position: | chr12:5369512-5369948 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 13, 270 |
| Conread position: | 189-506 |
| Cow position: | chr12:15077859-15078171 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 196-628 |
| Cow position: | chr12:21209365-21209798 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 196-719 |
| Cow position: | chr12:37559703-37560256 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 356 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 113, 154 |
| Conread position: | 196-720 |
| Cow position: | chr12:25262755-25262218 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 190 |
| Conread position: | 203-592 |
| Cow position: | chr12:21198681-21199076 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 227-540 |
| Cow position: | chr12:11580493-11580801 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 82, 20 |
| Conread position: | 231-668 |
| Cow position: | chr12:36337536-36337972 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 155 |
| Conread position: | 239-716 |
| Cow position: | chr12:21127915-21128372 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 75 |
| Conread position: | 242-720 |
| Cow position: | chr12:21387485-21386995 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 149 |
| Conread position: | 262-700 |
| Cow position: | chr12:12292748-12293186 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 139 |
| Conread position: | 311-624 |
| Cow position: | chr12:27513169-27513486 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 105, 84 |
| Conread position: | 311-656 |
| Cow position: | chr12:21289824-21290176 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 314-615 |
| Cow position: | chr12:349196-349499 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 322-537 |
| Cow position: | chr12:5552074-5551858 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 327-719 |
| Cow position: | chr12:35345408-35345796 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 69, 15 |
| Conread position: | 331-606 |
| Cow position: | chr12:28004786-28005050 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 272, 52 |
| Conread position: | 343-720 |
| Cow position: | chr12:39412827-39413188 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 345-644 |
| Cow position: | chr12:37862305-37862009 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 345-720 |
| Cow position: | chr12:6617999-6618371 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 221, 73 |
| Conread position: | 354-707 |
| Cow position: | chr12:11510403-11510753 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 35 |
| Conread position: | 363-720 |
| Cow position: | chr12:14694895-14695267 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 366-728 |
| Cow position: | chr12:18464850-18465204 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 383-720 |
| Cow position: | chr12:23141295-23140945 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 388-719 |
| Cow position: | chr12:3208862-3209206 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 397-719 |
| Cow position: | chr12:23162012-23161681 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 407-717 |
| Cow position: | chr12:485806-486122 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 421-720 |
| Cow position: | chr12:41465548-41465247 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 425-635 |
| Cow position: | chr12:19221936-19222148 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 459-643 |
| Cow position: | chr12:3051404-3051220 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 112, 88 |
| Conread position: | 497-720 |
| Cow position: | chr12:21253593-21253365 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 100, 65 |
Show alignments to all cow chromosomes.