Cow genome map

Conread name: Ss1.1-Pig4-TMW8022G06.3

Conread position: 119-720
Cow position: chr13:50109860-50110481 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 97

Conread position: 125-503
Cow position: chr13:58118496-58118107 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 268
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 38

Conread position: 135-716
Cow position: chr13:21839776-21839169 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 135-720
Cow position: chr13:17308896-17309498 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 135-720
Cow position: chr13:47229579-47228971 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 135-720
Cow position: chr13:49974106-49974693 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 137-503
Cow position: chr13:19440996-19441368 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 223

Conread position: 156-589
Cow position: chr13:20541588-20541160 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 116

Conread position: 156-706
Cow position: chr13:30278071-30278630 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 153

Conread position: 158-496
Cow position: chr13:19413938-19414267 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 78

Conread position: 158-515
Cow position: chr13:58263223-58263585 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 240
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 28, 142

Conread position: 158-534
Cow position: chr13:34029866-34030245 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 95

Conread position: 158-618
Cow position: chr13:46101790-46102250 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 312
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 31, 123

Conread position: 158-710
Cow position: chr13:25692147-25692696 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 110

Conread position: 161-418
Cow position: chr13:26775765-26776027 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 90

Conread position: 161-720
Cow position: chr13:14178379-14177814 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 12

Conread position: 164-469
Cow position: chr13:23002847-23002528 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 66

Conread position: 164-694
Cow position: chr13:32737366-32736821 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 231

Conread position: 164-697
Cow position: chr13:13900327-13900874 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 121

Conread position: 164-712
Cow position: chr13:31611844-31611288 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 95

Conread position: 164-715
Cow position: chr13:43982626-43982078 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 95

Conread position: 164-716
Cow position: chr13:1592694-1592128 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 180

Conread position: 164-720
Cow position: chr13:3653862-3653290 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 230

Conread position: 164-720
Cow position: chr13:4941847-4942412 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 180

Conread position: 164-720
Cow position: chr13:9045243-9045795 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 50

Conread position: 164-720
Cow position: chr13:15520049-15519492 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 225

Conread position: 164-720
Cow position: chr13:15923921-15923353 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 229

Conread position: 164-720
Cow position: chr13:30303741-30304323 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 224

Conread position: 164-728
Cow position: chr13:34937939-34938491 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 380
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 37, 92

Conread position: 165-639
Cow position: chr13:47276613-47277083 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 313
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 33, 52

Conread position: 171-471
Cow position: chr13:677484-677788 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 214
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 30, 49

Conread position: 171-471
Cow position: chr13:30244216-30243910 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 30, 43

Conread position: 171-485
Cow position: chr13:34910403-34910083 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 219
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 30, 220

Conread position: 171-588
Cow position: chr13:3056671-3056244 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-639
Cow position: chr13:34424226-34424705 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr13:2388350-2387779 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 43

Conread position: 171-720
Cow position: chr13:32984886-32984314 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 221

Conread position: 171-720
Cow position: chr13:42218460-42217883 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 303

Conread position: 171-720
Cow position: chr13:60466793-60467356 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 49

Conread position: 177-697
Cow position: chr13:31730400-31729888 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 39

Conread position: 177-716
Cow position: chr13:57024172-57024719 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 22

Conread position: 181-491
Cow position: chr13:30238719-30239028 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 16, 79

Conread position: 181-502
Cow position: chr13:33335833-33335511 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 85

Conread position: 181-588
Cow position: chr13:28670785-28670379 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 48

Conread position: 181-636
Cow position: chr13:34765971-34765519 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 137

Conread position: 181-646
Cow position: chr13:60700193-60699716 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 222

Conread position: 181-708
Cow position: chr13:20925481-20926016 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 346
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 36, 72

Conread position: 181-721
Cow position: chr13:32545856-32546420 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 51

Conread position: 184-630
Cow position: chr13:24631558-24632008 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 280
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 68

Conread position: 184-720
Cow position: chr13:34325080-34324526 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 208

Conread position: 196-611
Cow position: chr13:52646383-52645960 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 15

Conread position: 196-716
Cow position: chr13:15450628-15450094 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 361
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 115

Conread position: 196-720
Cow position: chr13:16254887-16254356 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 69

Conread position: 196-720
Cow position: chr13:34041841-34041309 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 195

Conread position: 199-710
Cow position: chr13:5625498-5624967 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 345
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 197, 17

Conread position: 199-716
Cow position: chr13:4484293-4484819 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 159

Conread position: 199-716
Cow position: chr13:5628313-5627807 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 150

Conread position: 201-503
Cow position: chr13:29227481-29227184 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 211
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 194, 22

Conread position: 213-429
Cow position: chr13:48358218-48358435 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 96, 13

Conread position: 253-636
Cow position: chr13:26844578-26844951 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 274
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 60, 92

Conread position: 267-684
Cow position: chr13:6758533-6758969 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 81

Conread position: 271-641
Cow position: chr13:17331194-17330816 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 21

Conread position: 273-590
Cow position: chr13:38669950-38670271 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 227
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 41, 29

Conread position: 283-720
Cow position: chr13:35757852-35758311 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 103

Conread position: 284-710
Cow position: chr13:34049319-34049761 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 298
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 63

Conread position: 290-646
Cow position: chr13:30654794-30654429 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 96

Conread position: 290-713
Cow position: chr13:15543128-15543565 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 62

Conread position: 296-668
Cow position: chr13:34154164-34153780 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 266
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 99, 17

Conread position: 296-720
Cow position: chr13:21696844-21697281 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 95

Conread position: 311-625
Cow position: chr13:24101527-24101846 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 203
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 113, 144

Conread position: 311-707
Cow position: chr13:6147838-6148240 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 261
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 84, 78

Conread position: 313-568
Cow position: chr13:32155461-32155206 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 172
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 83, 69

Conread position: 313-698
Cow position: chr13:12633181-12633552 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 76

Conread position: 314-569
Cow position: chr13:11071887-11071639 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 84, 24

Conread position: 319-603
Cow position: chr13:20967320-20967607 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 76, 49

Conread position: 321-716
Cow position: chr13:21602337-21602727 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 277
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 35, 87

Conread position: 340-715
Cow position: chr13:38071215-38070846 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 240
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 14

Conread position: 343-728
Cow position: chr13:8797149-8796757 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 45

Conread position: 344-650
Cow position: chr13:20062655-20062355 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 207
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 52, 44

Conread position: 346-668
Cow position: chr13:6640062-6640385 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 214
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 50, 42

Conread position: 346-712
Cow position: chr13:44653170-44652793 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 42

Conread position: 351-576
Cow position: chr13:25952747-25952970 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 33

Conread position: 351-721
Cow position: chr13:31733239-31732860 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 32

Conread position: 367-705
Cow position: chr13:27898430-27898094 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 29, 21

Conread position: 372-707
Cow position: chr13:42202569-42202225 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 241
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 12, 94

Conread position: 372-720
Cow position: chr13:14402426-14402068 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 374-639
Cow position: chr13:34206108-34205839 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 24, 75

Conread position: 375-720
Cow position: chr13:43590006-43590359 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 13

Conread position: 381-701
Cow position: chr13:57823988-57823678 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 39, 16

Conread position: 400-687
Cow position: chr13:11740183-11739889 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 220
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 22, 62

Conread position: 410-615
Cow position: chr13:47861536-47861746 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 9, 20

Conread position: 410-697
Cow position: chr13:31506346-31506623 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 160, 15

Conread position: 420-720
Cow position: chr13:13325642-13325957 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 220
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 72, 34

Conread position: 422-720
Cow position: chr13:47837313-47837024 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 194
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 165, 38

Conread position: 436-641
Cow position: chr13:51582698-51582905 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 132, 26

Conread position: 459-626
Cow position: chr13:42276684-42276514 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 111, 53

Conread position: 463-718
Cow position: chr13:23002248-23001977 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 43, 110

Conread position: 485-697
Cow position: chr13:51427036-51426815 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 17, 212

Show alignments to all cow chromosomes.