Cow genome map

Conread name: Ss1.1-Pig4-TMW8022G06.3

Conread position: 3-696
Cow position: chr14:33673615-33674290 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 35

Conread position: 124-474
Cow position: chr14:48970967-48971326 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 244
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 19, 224

Conread position: 124-697
Cow position: chr14:45081337-45081936 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 276

Conread position: 125-697
Cow position: chr14:48254011-48253432 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 94

Conread position: 125-720
Cow position: chr14:19327980-19327358 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 148

Conread position: 125-720
Cow position: chr14:20782750-20783359 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 101

Conread position: 135-534
Cow position: chr14:44286945-44286544 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 268
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 42, 64

Conread position: 135-534
Cow position: chr14:44288849-44288448 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 268
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 42, 64

Conread position: 135-569
Cow position: chr14:44131198-44131629 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 300
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 8, 28

Conread position: 135-716
Cow position: chr14:12610748-12611330 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 203

Conread position: 135-720
Cow position: chr14:2284636-2285232 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 138-720
Cow position: chr14:33393480-33392894 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 24

Conread position: 148-716
Cow position: chr14:29705391-29705948 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 13

Conread position: 152-720
Cow position: chr14:29580505-29581070 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 50

Conread position: 155-710
Cow position: chr14:38147328-38147899 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 19

Conread position: 157-720
Cow position: chr14:5074304-5074859 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 63

Conread position: 158-644
Cow position: chr14:44581680-44582187 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 191

Conread position: 158-706
Cow position: chr14:48602001-48601447 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 366
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 43, 213

Conread position: 158-715
Cow position: chr14:33402017-33402591 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 86

Conread position: 158-719
Cow position: chr14:17760550-17759977 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 59

Conread position: 158-721
Cow position: chr14:35365924-35365364 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 30

Conread position: 161-634
Cow position: chr14:147972-148450 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 69

Conread position: 161-639
Cow position: chr14:37455730-37455248 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 15

Conread position: 161-685
Cow position: chr14:16883502-16882973 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 214

Conread position: 162-715
Cow position: chr14:40341386-40341956 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 106

Conread position: 163-716
Cow position: chr14:44676455-44677012 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 38

Conread position: 164-635
Cow position: chr14:15275896-15275419 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 177

Conread position: 164-635
Cow position: chr14:17685731-17686213 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 22

Conread position: 164-640
Cow position: chr14:190299-190786 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 226

Conread position: 164-696
Cow position: chr14:7472697-7473231 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 47

Conread position: 164-696
Cow position: chr14:32447128-32447672 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 180

Conread position: 164-697
Cow position: chr14:12742735-12742186 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-697
Cow position: chr14:13620817-13620259 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 80

Conread position: 164-697
Cow position: chr14:16919382-16918836 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 180

Conread position: 164-697
Cow position: chr14:17000727-17000176 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-706
Cow position: chr14:45711383-45710833 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 216

Conread position: 164-707
Cow position: chr14:5529400-5529954 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-707
Cow position: chr14:37224523-37225083 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 224

Conread position: 164-710
Cow position: chr14:13863758-13863201 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 162

Conread position: 164-720
Cow position: chr14:12899434-12900000 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 98

Conread position: 164-720
Cow position: chr14:16272964-16272390 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 165-468
Cow position: chr14:44256632-44256334 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 208
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 39, 116

Conread position: 166-547
Cow position: chr14:5512160-5512546 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 63

Conread position: 166-707
Cow position: chr14:11153828-11153260 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 184

Conread position: 169-697
Cow position: chr14:44689393-44689952 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 86

Conread position: 171-458
Cow position: chr14:16343810-16343514 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 195
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 30, 218

Conread position: 171-541
Cow position: chr14:35385729-35385356 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 263
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 21, 46

Conread position: 171-631
Cow position: chr14:23257698-23258166 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 319
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 30, 43

Conread position: 171-646
Cow position: chr14:45206662-45207130 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 328
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 43

Conread position: 171-720
Cow position: chr14:17491120-17490555 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 357
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 42, 184

Conread position: 171-720
Cow position: chr14:29047346-29046781 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 212

Conread position: 171-720
Cow position: chr14:30584617-30584048 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 371
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr14:45671708-45671143 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 178-694
Cow position: chr14:9100373-9099842 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 210

Conread position: 178-712
Cow position: chr14:18104821-18105341 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 352
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 35, 89

Conread position: 178-720
Cow position: chr14:13027663-13028195 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 366
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 34

Conread position: 180-629
Cow position: chr14:41475470-41475918 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 286
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 16, 66

Conread position: 181-495
Cow position: chr14:46465673-46465990 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 36, 194

Conread position: 181-503
Cow position: chr14:45189429-45189100 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 163

Conread position: 181-635
Cow position: chr14:33237377-33237834 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 38

Conread position: 181-720
Cow position: chr14:13779308-13779849 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 132

Conread position: 181-720
Cow position: chr14:44226751-44227281 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 347
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 70

Conread position: 181-720
Cow position: chr14:46392173-46391627 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 6

Conread position: 182-647
Cow position: chr14:33488768-33489231 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 80

Conread position: 182-697
Cow position: chr14:11561677-11561143 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 86

Conread position: 188-646
Cow position: chr14:48825640-48826111 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 114

Conread position: 193-544
Cow position: chr14:48404602-48404251 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 242
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 9, 149

Conread position: 195-682
Cow position: chr14:45028636-45028125 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 16

Conread position: 196-464
Cow position: chr14:45161465-45161726 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 113, 30

Conread position: 196-710
Cow position: chr14:38531089-38530563 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 28

Conread position: 196-716
Cow position: chr14:9045942-9046477 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 15

Conread position: 198-697
Cow position: chr14:38229218-38228752 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 52

Conread position: 201-716
Cow position: chr14:33677436-33677972 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 131

Conread position: 202-720
Cow position: chr14:22031067-22030541 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 139

Conread position: 205-695
Cow position: chr14:44378178-44378678 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 153

Conread position: 207-707
Cow position: chr14:13273981-13274501 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 148

Conread position: 217-697
Cow position: chr14:50111180-50111676 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 124

Conread position: 223-502
Cow position: chr14:13461986-13462258 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 193
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 8

Conread position: 231-513
Cow position: chr14:44552281-44552567 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 120

Conread position: 239-547
Cow position: chr14:29775805-29775492 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 70, 25

Conread position: 250-710
Cow position: chr14:40169292-40168837 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 318
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 59, 108

Conread position: 251-569
Cow position: chr14:47674256-47674573 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 212
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 113

Conread position: 270-720
Cow position: chr14:751007-751469 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 121

Conread position: 317-615
Cow position: chr14:29224572-29224284 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 78, 65

Conread position: 317-720
Cow position: chr14:9514795-9514383 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 277
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 25, 69

Conread position: 319-720
Cow position: chr14:37413251-37412845 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 66

Conread position: 321-640
Cow position: chr14:46529725-46530041 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 17

Conread position: 321-710
Cow position: chr14:43558733-43559130 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 273
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 75, 33

Conread position: 321-728
Cow position: chr14:35424588-35424997 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 26

Conread position: 324-512
Cow position: chr14:49046102-49046290 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 72, 14

Conread position: 328-589
Cow position: chr14:30762650-30762393 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 178
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 67, 56

Conread position: 343-569
Cow position: chr14:13833724-13833500 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 185, 40

Conread position: 345-694
Cow position: chr14:24522463-24522813 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 43

Conread position: 347-569
Cow position: chr14:2291964-2292183 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 48, 28

Conread position: 347-716
Cow position: chr14:28124461-28124092 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 258
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 49, 41

Conread position: 393-641
Cow position: chr14:23823769-23823520 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 167
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 40

Conread position: 397-720
Cow position: chr14:10520917-10520595 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 64

Conread position: 403-720
Cow position: chr14:10147450-10147777 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 18, 59

Conread position: 409-706
Cow position: chr14:37984170-37984475 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 53

Conread position: 422-697
Cow position: chr14:32532570-32532287 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 127, 25

Conread position: 432-716
Cow position: chr14:33604346-33604640 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 77, 28

Conread position: 432-720
Cow position: chr14:13303580-13303862 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 163, 14

Conread position: 454-727
Cow position: chr14:39722314-39722036 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 50

Show alignments to all cow chromosomes.