Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022G06.3 |
| Conread position: | 3-675 |
| Cow position: | chr17:6076622-6077276 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 118-720 |
| Cow position: | chr17:34156630-34157253 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 125-697 |
| Cow position: | chr17:24029485-24028890 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 269 |
| Conread position: | 125-697 |
| Cow position: | chr17:40805336-40805919 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 116 |
| Conread position: | 125-716 |
| Cow position: | chr17:6069076-6069683 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 266 |
| Conread position: | 125-720 |
| Cow position: | chr17:15324348-15324962 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 274 |
| Conread position: | 125-720 |
| Cow position: | chr17:23323934-23323319 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 135-640 |
| Cow position: | chr17:24782689-24783210 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 135-696 |
| Cow position: | chr17:1880632-1881212 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 135-720 |
| Cow position: | chr17:3655765-3655160 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 136-720 |
| Cow position: | chr17:11783375-11783987 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 410 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 7, 83 |
| Conread position: | 136-720 |
| Cow position: | chr17:31767511-31766904 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 158-630 |
| Cow position: | chr17:13705116-13705585 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 132 |
| Conread position: | 158-710 |
| Cow position: | chr17:18194370-18194931 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 158-716 |
| Cow position: | chr17:3708218-3707648 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 374 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 92 |
| Conread position: | 158-721 |
| Cow position: | chr17:1657291-1656715 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 134 |
| Conread position: | 164-456 |
| Cow position: | chr17:18103124-18102829 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 180 |
| Conread position: | 164-577 |
| Cow position: | chr17:3642269-3641848 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 180 |
| Conread position: | 164-647 |
| Cow position: | chr17:5227185-5227680 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 344 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 37, 56 |
| Conread position: | 164-697 |
| Cow position: | chr17:2580186-2580736 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 175 |
| Conread position: | 164-697 |
| Cow position: | chr17:6260413-6260972 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 211 |
| Conread position: | 164-697 |
| Cow position: | chr17:19268266-19267715 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 230 |
| Conread position: | 164-707 |
| Cow position: | chr17:20081300-20080749 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 186 |
| Conread position: | 164-709 |
| Cow position: | chr17:16856955-16856395 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 164-720 |
| Cow position: | chr17:11087159-11086593 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 164-720 |
| Cow position: | chr17:15436355-15436915 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 164-720 |
| Cow position: | chr17:15851255-15851822 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 197 |
| Conread position: | 164-720 |
| Cow position: | chr17:19020139-19020712 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 31 |
| Conread position: | 164-720 |
| Cow position: | chr17:20402985-20403563 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 164-728 |
| Cow position: | chr17:2030684-2031267 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 165-367 |
| Cow position: | chr17:28018953-28019161 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 171-615 |
| Cow position: | chr17:8209678-8210135 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 171-710 |
| Cow position: | chr17:2247499-2246964 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 364 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 176-718 |
| Cow position: | chr17:250737-251281 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 373 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 25, 108 |
| Conread position: | 178-720 |
| Cow position: | chr17:3325869-3326390 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 67 |
| Conread position: | 180-510 |
| Cow position: | chr17:15156390-15156055 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 54 |
| Conread position: | 181-449 |
| Cow position: | chr17:14307270-14306998 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 53 |
| Conread position: | 181-551 |
| Cow position: | chr17:11025937-11025556 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 181-720 |
| Cow position: | chr17:20087170-20086633 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 166 |
| Conread position: | 183-646 |
| Cow position: | chr17:20488529-20488997 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 36 |
| Conread position: | 192-720 |
| Cow position: | chr17:6000847-6000345 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 151 |
| Conread position: | 194-710 |
| Cow position: | chr17:22558583-22559094 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 347 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 9, 5 |
| Conread position: | 195-720 |
| Cow position: | chr17:4942132-4941583 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 95 |
| Conread position: | 196-707 |
| Cow position: | chr17:14894759-14895294 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 190 |
| Conread position: | 196-716 |
| Cow position: | chr17:14040435-14039911 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 106 |
| Conread position: | 196-719 |
| Cow position: | chr17:14216435-14215895 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 196-720 |
| Cow position: | chr17:2262702-2263241 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 196-720 |
| Cow position: | chr17:4082637-4083156 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 365 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 196-720 |
| Cow position: | chr17:6120310-6120849 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 190 |
| Conread position: | 196-720 |
| Cow position: | chr17:20099879-20099334 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 58 |
| Conread position: | 196-720 |
| Cow position: | chr17:43989099-43989635 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 54 |
| Conread position: | 200-471 |
| Cow position: | chr17:20722221-20722495 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 202-687 |
| Cow position: | chr17:13990741-13990249 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 46 |
| Conread position: | 223-543 |
| Cow position: | chr17:42265585-42265909 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 225-569 |
| Cow position: | chr17:14910840-14910497 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 75 |
| Conread position: | 229-720 |
| Cow position: | chr17:54823-54311 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 342 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 237-694 |
| Cow position: | chr17:31532868-31533318 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 6 |
| Conread position: | 242-563 |
| Cow position: | chr17:38874273-38874600 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 244-719 |
| Cow position: | chr17:16899660-16899180 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 322 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 246-712 |
| Cow position: | chr17:36548-37019 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 66 |
| Conread position: | 259-707 |
| Cow position: | chr17:4060761-4061219 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 6 |
| Conread position: | 265-710 |
| Cow position: | chr17:1787272-1786830 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 123 |
| Conread position: | 269-720 |
| Cow position: | chr17:14240169-14240633 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 124 |
| Conread position: | 272-710 |
| Cow position: | chr17:1704018-1703571 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 294 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 272-720 |
| Cow position: | chr17:151224-150751 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 289-697 |
| Cow position: | chr17:17130831-17131245 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 294-711 |
| Cow position: | chr17:16121824-16121431 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 205, 20 |
| Conread position: | 319-692 |
| Cow position: | chr17:239067-239444 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 68, 75 |
| Conread position: | 319-706 |
| Cow position: | chr17:39452846-39453242 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 334-716 |
| Cow position: | chr17:15371963-15372355 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 347-615 |
| Cow position: | chr17:2092050-2091779 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 347-683 |
| Cow position: | chr17:41541635-41541962 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 56, 35 |
| Conread position: | 351-720 |
| Cow position: | chr17:6611733-6611354 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 361-716 |
| Cow position: | chr17:8202731-8203084 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 376-721 |
| Cow position: | chr17:22132983-22133333 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 257 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 405-609 |
| Cow position: | chr17:11748557-11748767 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 413-706 |
| Cow position: | chr17:21418400-21418693 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 151, 41 |
| Conread position: | 459-609 |
| Cow position: | chr17:42313426-42313273 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 107, 38 |
Show alignments to all cow chromosomes.