Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022G06.3 |
| Conread position: | 9-710 |
| Cow position: | chr18:16869048-16869745 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 6 |
| Conread position: | 125-504 |
| Cow position: | chr18:54170802-54170416 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 140 |
| Conread position: | 125-621 |
| Cow position: | chr18:32652945-32653458 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 269 |
| Conread position: | 135-569 |
| Cow position: | chr18:33952842-33952397 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 135-720 |
| Cow position: | chr18:51661080-51661684 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 28 |
| Conread position: | 138-720 |
| Cow position: | chr18:51342428-51343029 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 158-438 |
| Cow position: | chr18:54086299-54086018 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 151, 38 |
| Conread position: | 158-503 |
| Cow position: | chr18:33269591-33269939 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 63 |
| Conread position: | 158-688 |
| Cow position: | chr18:51275270-51274735 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 158-706 |
| Cow position: | chr18:36256131-36255594 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 148 |
| Conread position: | 158-707 |
| Cow position: | chr18:25961653-25961089 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 360 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 41, 59 |
| Conread position: | 158-720 |
| Cow position: | chr18:11274340-11273773 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 161-637 |
| Cow position: | chr18:51239067-51239543 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 66 |
| Conread position: | 161-710 |
| Cow position: | chr18:54271270-54271811 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 163-719 |
| Cow position: | chr18:12272316-12272852 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 355 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 125, 50 |
| Conread position: | 164-697 |
| Cow position: | chr18:16175842-16175297 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 119 |
| Conread position: | 164-697 |
| Cow position: | chr18:27837536-27836988 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 164-697 |
| Cow position: | chr18:28973112-28972566 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 230 |
| Conread position: | 164-697 |
| Cow position: | chr18:37506733-37507279 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 164-697 |
| Cow position: | chr18:40479161-40479715 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 213 |
| Conread position: | 164-697 |
| Cow position: | chr18:52651689-52652231 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 164-706 |
| Cow position: | chr18:6062018-6061474 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 356 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 98, 75 |
| Conread position: | 164-716 |
| Cow position: | chr18:14416757-14417322 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 231 |
| Conread position: | 164-720 |
| Cow position: | chr18:16088919-16089463 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 58 |
| Conread position: | 164-720 |
| Cow position: | chr18:41840036-41839474 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 304 |
| Conread position: | 168-536 |
| Cow position: | chr18:32768435-32768808 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 171-716 |
| Cow position: | chr18:21096009-21096523 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 178-534 |
| Cow position: | chr18:16666295-16665930 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 136 |
| Conread position: | 179-707 |
| Cow position: | chr18:18496241-18495715 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 357 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 181-697 |
| Cow position: | chr18:51481676-51482191 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 183 |
| Conread position: | 181-710 |
| Cow position: | chr18:54023347-54022796 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 188-710 |
| Cow position: | chr18:29073802-29074320 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 196-385 |
| Cow position: | chr18:33336681-33336875 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 196-475 |
| Cow position: | chr18:25351563-25351846 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 115, 195 |
| Conread position: | 196-509 |
| Cow position: | chr18:33750820-33751134 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 179 |
| Conread position: | 196-644 |
| Cow position: | chr18:36509146-36509605 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 266 |
| Conread position: | 196-697 |
| Cow position: | chr18:23798456-23798968 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 75 |
| Conread position: | 196-720 |
| Cow position: | chr18:14131200-14131737 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 195 |
| Conread position: | 198-716 |
| Cow position: | chr18:40081593-40081073 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 201-707 |
| Cow position: | chr18:33142071-33142584 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 27 |
| Conread position: | 201-720 |
| Cow position: | chr18:29047133-29046615 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 355 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 195, 108 |
| Conread position: | 204-712 |
| Cow position: | chr18:16721303-16720808 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 345 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 206-630 |
| Cow position: | chr18:27988008-27988450 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 180 |
| Conread position: | 231-706 |
| Cow position: | chr18:29237764-29238227 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 232-698 |
| Cow position: | chr18:23449019-23448557 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 253-655 |
| Cow position: | chr18:42062264-42062662 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 134, 146 |
| Conread position: | 265-721 |
| Cow position: | chr18:18842719-18842276 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 302 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 129, 34 |
| Conread position: | 268-693 |
| Cow position: | chr18:33300208-33300627 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 271-712 |
| Cow position: | chr18:19405680-19405238 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 278-645 |
| Cow position: | chr18:15856132-15856485 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 311-661 |
| Cow position: | chr18:17197487-17197132 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 311-707 |
| Cow position: | chr18:35313299-35313701 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 85, 71 |
| Conread position: | 311-710 |
| Cow position: | chr18:54005246-54004837 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 313-571 |
| Cow position: | chr18:51276111-51275856 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 313-646 |
| Cow position: | chr18:25364132-25364464 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 318-645 |
| Cow position: | chr18:10648361-10648682 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 71 |
| Conread position: | 319-644 |
| Cow position: | chr18:29032013-29031689 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 77, 36 |
| Conread position: | 324-707 |
| Cow position: | chr18:38343339-38342961 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 105 |
| Conread position: | 331-685 |
| Cow position: | chr18:15821868-15821520 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 343-720 |
| Cow position: | chr18:30848714-30848329 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 348-707 |
| Cow position: | chr18:207457-207086 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 351-557 |
| Cow position: | chr18:45946882-45946675 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 352-720 |
| Cow position: | chr18:47742469-47742846 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 376-647 |
| Cow position: | chr18:44402691-44402966 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 19, 87 |
| Conread position: | 384-582 |
| Cow position: | chr18:34042454-34042654 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 401-716 |
| Cow position: | chr18:29407427-29407106 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 35, 66 |
| Conread position: | 407-710 |
| Cow position: | chr18:37335307-37335629 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 413-697 |
| Cow position: | chr18:46867865-46867579 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 143, 5 |
| Conread position: | 418-720 |
| Cow position: | chr18:2297910-2297595 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 443-637 |
| Cow position: | chr18:16138033-16137836 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 455-710 |
| Cow position: | chr18:18528164-18528431 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 474-637 |
| Cow position: | chr18:20834381-20834547 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 476-720 |
| Cow position: | chr18:25352347-25352600 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 90, 236 |
| Conread position: | 551-710 |
| Cow position: | chr18:37663511-37663679 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 20, 115 |
Show alignments to all cow chromosomes.