Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022G06.3 |
| Conread position: | 119-710 |
| Cow position: | chr19:32182344-32181738 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 6 |
| Conread position: | 122-561 |
| Cow position: | chr19:27051762-27051340 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 259, 34 |
| Conread position: | 125-696 |
| Cow position: | chr19:2273649-2273057 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 125-697 |
| Cow position: | chr19:892870-892300 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 259 |
| Conread position: | 125-720 |
| Cow position: | chr19:438703-438093 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 146-710 |
| Cow position: | chr19:10509699-10509154 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 238 |
| Conread position: | 158-499 |
| Cow position: | chr19:9707359-9707015 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 152 |
| Conread position: | 158-542 |
| Cow position: | chr19:341989-342383 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 231 |
| Conread position: | 158-583 |
| Cow position: | chr19:39699234-39699661 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 159 |
| Conread position: | 161-719 |
| Cow position: | chr19:5652933-5652385 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 370 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 148, 56 |
| Conread position: | 164-523 |
| Cow position: | chr19:40886968-40886603 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 44, 230 |
| Conread position: | 164-621 |
| Cow position: | chr19:33942381-33942854 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 228 |
| Conread position: | 164-695 |
| Cow position: | chr19:4386403-4386940 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 47 |
| Conread position: | 164-697 |
| Cow position: | chr19:33874202-33874751 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 225 |
| Conread position: | 164-697 |
| Cow position: | chr19:40851663-40851124 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 120 |
| Conread position: | 164-698 |
| Cow position: | chr19:12773894-12774438 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 197 |
| Conread position: | 164-707 |
| Cow position: | chr19:28580882-28580327 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 197 |
| Conread position: | 164-720 |
| Cow position: | chr19:39184762-39184194 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 230 |
| Conread position: | 164-720 |
| Cow position: | chr19:39391287-39391856 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 165-646 |
| Cow position: | chr19:7070093-7070571 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 58 |
| Conread position: | 167-432 |
| Cow position: | chr19:6548787-6549060 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 222 |
| Conread position: | 171-646 |
| Cow position: | chr19:39079-39567 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 171-716 |
| Cow position: | chr19:28594334-28594887 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 171-716 |
| Cow position: | chr19:32211292-32210732 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 368 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 171-720 |
| Cow position: | chr19:7342850-7343415 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 171-720 |
| Cow position: | chr19:20105493-20106075 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 385 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 171-720 |
| Cow position: | chr19:32193797-32194373 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 178-554 |
| Cow position: | chr19:347537-347155 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 23, 208 |
| Conread position: | 178-716 |
| Cow position: | chr19:5028281-5027741 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 218 |
| Conread position: | 179-720 |
| Cow position: | chr19:43144501-43145060 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 368 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 181-447 |
| Cow position: | chr19:32203939-32204211 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 181-710 |
| Cow position: | chr19:3138720-3139267 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 163 |
| Conread position: | 181-726 |
| Cow position: | chr19:27036786-27036252 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 189-710 |
| Cow position: | chr19:28405898-28405367 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 7 |
| Conread position: | 195-693 |
| Cow position: | chr19:3113066-3113567 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 196-503 |
| Cow position: | chr19:52151022-52150712 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 196-700 |
| Cow position: | chr19:1656230-1656756 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 341 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 196-720 |
| Cow position: | chr19:135977-135443 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 21 |
| Conread position: | 196-720 |
| Cow position: | chr19:5900691-5900164 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 190 |
| Conread position: | 199-719 |
| Cow position: | chr19:50723354-50723903 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 358 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 108, 94 |
| Conread position: | 217-475 |
| Cow position: | chr19:34660258-34660001 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 234-504 |
| Cow position: | chr19:1588363-1588091 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 8 |
| Conread position: | 271-720 |
| Cow position: | chr19:7489231-7489698 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 285-646 |
| Cow position: | chr19:35384709-35384344 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 290-634 |
| Cow position: | chr19:204891-205242 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 105, 13 |
| Conread position: | 292-697 |
| Cow position: | chr19:173140-173581 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 292-720 |
| Cow position: | chr19:11522258-11521830 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 311-488 |
| Cow position: | chr19:39667811-39667641 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 312-691 |
| Cow position: | chr19:5729803-5730190 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 317-707 |
| Cow position: | chr19:5162764-5162380 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 324-597 |
| Cow position: | chr19:24835078-24834794 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 86, 59 |
| Conread position: | 332-523 |
| Cow position: | chr19:1490076-1489890 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 338-569 |
| Cow position: | chr19:35379546-35379770 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 343-639 |
| Cow position: | chr19:51674144-51673850 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 343-684 |
| Cow position: | chr19:10365865-10366195 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 347-550 |
| Cow position: | chr19:40795244-40795048 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 350-721 |
| Cow position: | chr19:38061401-38061777 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 361-637 |
| Cow position: | chr19:28366994-28367268 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 361-720 |
| Cow position: | chr19:48861225-48860865 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 374-692 |
| Cow position: | chr19:25924319-25924655 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 401-710 |
| Cow position: | chr19:30756231-30756558 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 405-680 |
| Cow position: | chr19:52842579-52842858 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 417-710 |
| Cow position: | chr19:6713672-6713390 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 203, 37 |
| Conread position: | 423-712 |
| Cow position: | chr19:33442558-33442268 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 148, 30 |
| Conread position: | 435-713 |
| Cow position: | chr19:256310-256604 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 437-719 |
| Cow position: | chr19:32204349-32204640 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 456-720 |
| Cow position: | chr19:33527186-33527459 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 461-712 |
| Cow position: | chr19:788495-788747 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 180, 109 |
| Conread position: | 471-697 |
| Cow position: | chr19:34659116-34658892 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 97, 115 |
| Conread position: | 475-696 |
| Cow position: | chr19:17067587-17067820 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.