Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022G06.3 |
| Conread position: | 88-605 |
| Cow position: | chr20:28303558-28304069 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 309 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 121, 129 |
| Conread position: | 125-720 |
| Cow position: | chr20:12569214-12569830 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 141 |
| Conread position: | 135-720 |
| Cow position: | chr20:8974115-8973512 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 262 |
| Conread position: | 158-371 |
| Cow position: | chr20:22697992-22698211 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 158-391 |
| Cow position: | chr20:10854619-10854391 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 151, 43 |
| Conread position: | 158-510 |
| Cow position: | chr20:22207851-22208206 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 43, 189 |
| Conread position: | 158-558 |
| Cow position: | chr20:31498359-31497961 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 120 |
| Conread position: | 158-569 |
| Cow position: | chr20:13433859-13433454 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 43 |
| Conread position: | 158-588 |
| Cow position: | chr20:19884217-19884640 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 230 |
| Conread position: | 158-720 |
| Cow position: | chr20:15066214-15066776 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 152 |
| Conread position: | 160-636 |
| Cow position: | chr20:7083675-7083193 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 234 |
| Conread position: | 161-646 |
| Cow position: | chr20:19050805-19050323 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 161-715 |
| Cow position: | chr20:35105494-35106095 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 397 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 161-716 |
| Cow position: | chr20:37580944-37581518 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 164-469 |
| Cow position: | chr20:21915055-21915366 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 37, 197 |
| Conread position: | 164-547 |
| Cow position: | chr20:17661340-17660953 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 227 |
| Conread position: | 164-549 |
| Cow position: | chr20:16105803-16105411 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 164-581 |
| Cow position: | chr20:18963078-18962676 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 164-669 |
| Cow position: | chr20:15097140-15096632 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 140 |
| Conread position: | 164-697 |
| Cow position: | chr20:15292741-15293275 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 164-697 |
| Cow position: | chr20:25850092-25849536 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 272 |
| Conread position: | 164-697 |
| Cow position: | chr20:28161555-28162101 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 164-697 |
| Cow position: | chr20:35125231-35125778 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 189 |
| Conread position: | 164-712 |
| Cow position: | chr20:18314604-18314045 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 75 |
| Conread position: | 164-716 |
| Cow position: | chr20:13763644-13764206 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 164-716 |
| Cow position: | chr20:28564854-28564277 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 164-720 |
| Cow position: | chr20:5535671-5536244 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 164-720 |
| Cow position: | chr20:23468927-23468355 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 164-720 |
| Cow position: | chr20:23799619-23800191 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 230 |
| Conread position: | 164-720 |
| Cow position: | chr20:29949239-29949824 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 225 |
| Conread position: | 168-667 |
| Cow position: | chr20:19355503-19356022 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 230 |
| Conread position: | 171-631 |
| Cow position: | chr20:38351416-38351885 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 171-718 |
| Cow position: | chr20:8216259-8216819 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 178-715 |
| Cow position: | chr20:21969264-21968731 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 337 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 113 |
| Conread position: | 180-700 |
| Cow position: | chr20:21394681-21395208 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 181-641 |
| Cow position: | chr20:10101943-10101476 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 30 |
| Conread position: | 181-720 |
| Cow position: | chr20:27869956-27870511 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 208 |
| Conread position: | 184-641 |
| Cow position: | chr20:2399390-2399856 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 306 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 21, 119 |
| Conread position: | 184-712 |
| Cow position: | chr20:24616112-24615591 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 115 |
| Conread position: | 187-720 |
| Cow position: | chr20:19438675-19439222 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 188-682 |
| Cow position: | chr20:12437945-12437443 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 175 |
| Conread position: | 189-412 |
| Cow position: | chr20:30685085-30685308 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 122, 7 |
| Conread position: | 195-720 |
| Cow position: | chr20:14870178-14869650 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 196-495 |
| Cow position: | chr20:37442525-37442236 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 113, 74 |
| Conread position: | 196-720 |
| Cow position: | chr20:823530-824078 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 171 |
| Conread position: | 240-710 |
| Cow position: | chr20:872147-871709 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 64 |
| Conread position: | 241-694 |
| Cow position: | chr20:3678625-3678182 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 312 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 179, 73 |
| Conread position: | 278-640 |
| Cow position: | chr20:1742714-1743067 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 292-716 |
| Cow position: | chr20:5465915-5466340 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 94 |
| Conread position: | 319-719 |
| Cow position: | chr20:5229611-5229206 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 321-615 |
| Cow position: | chr20:16428898-16428602 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 327-710 |
| Cow position: | chr20:5791263-5791637 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 344-697 |
| Cow position: | chr20:8366993-8366645 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 345-644 |
| Cow position: | chr20:927598-927316 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 350-646 |
| Cow position: | chr20:27897120-27896823 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 356-720 |
| Cow position: | chr20:13786999-13787366 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 362-719 |
| Cow position: | chr20:2788212-2787842 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 378-707 |
| Cow position: | chr20:20410600-20410262 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 87 |
| Conread position: | 417-720 |
| Cow position: | chr20:13499107-13499420 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 132, 43 |
| Conread position: | 418-720 |
| Cow position: | chr20:10854343-10854031 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 130, 45 |
| Conread position: | 419-720 |
| Cow position: | chr20:30686568-30686880 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 422-711 |
| Cow position: | chr20:9343971-9344268 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 428-646 |
| Cow position: | chr20:18323914-18323708 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 456-691 |
| Cow position: | chr20:13768826-13769065 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 109, 75 |
| Conread position: | 456-721 |
| Cow position: | chr20:27338243-27338507 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 47, 190 |
Show alignments to all cow chromosomes.