Cow genome map

Conread name: Ss1.1-Pig4-TMW8022G06.3

Conread position: 3-721
Cow position: chr21:18817844-18817127 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 62

Conread position: 119-557
Cow position: chr21:13313564-13314005 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 298
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 24, 153

Conread position: 122-716
Cow position: chr21:29894-30489 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 33

Conread position: 125-646
Cow position: chr21:25782449-25782979 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 161

Conread position: 158-450
Cow position: chr21:445968-446258 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 43, 90

Conread position: 158-476
Cow position: chr21:49295451-49295777 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 219
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 35, 243

Conread position: 158-631
Cow position: chr21:360487-360987 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 73

Conread position: 158-646
Cow position: chr21:21943918-21943423 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 125

Conread position: 158-702
Cow position: chr21:1689316-1688750 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 5

Conread position: 158-712
Cow position: chr21:217898-218438 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 140

Conread position: 158-720
Cow position: chr21:12055158-12054597 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 56

Conread position: 161-697
Cow position: chr21:39087852-39088392 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 225

Conread position: 164-453
Cow position: chr21:4077686-4077980 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 213
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 34, 122

Conread position: 164-696
Cow position: chr21:5840414-5839866 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-697
Cow position: chr21:146779-147324 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 224

Conread position: 164-697
Cow position: chr21:3779618-3780168 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 167

Conread position: 164-697
Cow position: chr21:26402638-26402090 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-697
Cow position: chr21:27070117-27069566 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 167

Conread position: 164-697
Cow position: chr21:33253027-33253580 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 114

Conread position: 164-697
Cow position: chr21:35144612-35145157 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 114

Conread position: 164-707
Cow position: chr21:1192610-1193163 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 197

Conread position: 164-712
Cow position: chr21:40270822-40270260 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 197

Conread position: 164-716
Cow position: chr21:2882888-2882324 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 228

Conread position: 164-720
Cow position: chr21:10850930-10851504 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 185

Conread position: 164-720
Cow position: chr21:31515475-31514896 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 222

Conread position: 164-721
Cow position: chr21:467728-468277 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 152

Conread position: 166-614
Cow position: chr21:10567529-10567978 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 59

Conread position: 171-404
Cow position: chr21:5015448-5015213 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 97

Conread position: 171-557
Cow position: chr21:46916532-46916925 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 260
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 30, 218

Conread position: 171-639
Cow position: chr21:18049565-18049102 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 307
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 21

Conread position: 171-713
Cow position: chr21:4589137-4588562 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 126

Conread position: 171-720
Cow position: chr21:11506454-11507032 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 375
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr21:37372098-37372658 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 63

Conread position: 172-583
Cow position: chr21:30316133-30316549 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 279
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 61

Conread position: 172-710
Cow position: chr21:27030176-27030722 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 356
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 19, 24

Conread position: 172-710
Cow position: chr21:39425921-39426472 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 42

Conread position: 177-646
Cow position: chr21:23297948-23297486 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 308
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 58, 21

Conread position: 178-634
Cow position: chr21:8270912-8270459 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 301
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 22, 101

Conread position: 179-471
Cow position: chr21:11452792-11452492 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 207
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 35

Conread position: 179-522
Cow position: chr21:33954240-33954580 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 244
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 22, 61

Conread position: 179-614
Cow position: chr21:37046487-37046931 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 179-656
Cow position: chr21:45909096-45908638 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 313
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 100

Conread position: 179-711
Cow position: chr21:37148899-37149444 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 181-499
Cow position: chr21:20743715-20743389 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 92

Conread position: 181-505
Cow position: chr21:37719152-37718821 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 98

Conread position: 192-694
Cow position: chr21:21915572-21916083 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 28

Conread position: 195-437
Cow position: chr21:48116986-48117229 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 116, 64

Conread position: 196-469
Cow position: chr21:27566532-27566800 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 113, 69

Conread position: 196-564
Cow position: chr21:4184789-4185160 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 190

Conread position: 196-697
Cow position: chr21:28256315-28256823 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 199

Conread position: 196-710
Cow position: chr21:2417100-2417625 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 21

Conread position: 196-720
Cow position: chr21:1287333-1286782 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 195

Conread position: 199-520
Cow position: chr21:26637315-26636988 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 223
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 18, 12

Conread position: 199-710
Cow position: chr21:45114987-45115496 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 343
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 22, 16

Conread position: 239-714
Cow position: chr21:9892820-9893308 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 9

Conread position: 246-591
Cow position: chr21:2540138-2539795 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 230
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 150, 68

Conread position: 253-568
Cow position: chr21:49325402-49325719 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 222
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 7, 30

Conread position: 259-624
Cow position: chr21:5018062-5018435 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 263
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 6

Conread position: 259-639
Cow position: chr21:37935773-37936160 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 6

Conread position: 259-720
Cow position: chr21:3169346-3169810 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 97

Conread position: 265-568
Cow position: chr21:38806360-38806064 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 208
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 14

Conread position: 282-485
Cow position: chr21:28613076-28613272 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 114, 28

Conread position: 285-547
Cow position: chr21:6624746-6625012 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 24, 104

Conread position: 295-728
Cow position: chr21:2711950-2712366 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 299
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 14, 96

Conread position: 296-504
Cow position: chr21:21222983-21222771 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 13, 90

Conread position: 311-583
Cow position: chr21:45301474-45301199 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 175
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 77

Conread position: 311-706
Cow position: chr21:28985120-28985513 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 274
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 35, 11

Conread position: 311-707
Cow position: chr21:13086084-13086483 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 260
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 255, 69

Conread position: 311-707
Cow position: chr21:16693233-16693628 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 277
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 84, 72

Conread position: 331-720
Cow position: chr21:26835913-26836316 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 278
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 65, 57

Conread position: 344-646
Cow position: chr21:2900784-2901096 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 209
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 38

Conread position: 344-704
Cow position: chr21:30163998-30163651 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 240
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 175, 44

Conread position: 344-718
Cow position: chr21:45782517-45782902 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 44

Conread position: 347-707
Cow position: chr21:2673968-2673595 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 254
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 49, 41

Conread position: 349-720
Cow position: chr21:34823173-34822792 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 350-719
Cow position: chr21:45786391-45786014 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 30

Conread position: 354-582
Cow position: chr21:24085577-24085347 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 42, 30

Conread position: 354-687
Cow position: chr21:40080343-40080682 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 234
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 42, 14

Conread position: 355-720
Cow position: chr21:27284499-27284888 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 41, 33

Conread position: 355-720
Cow position: chr21:30598428-30598060 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 29

Conread position: 368-588
Cow position: chr21:29625684-29625460 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 21

Conread position: 377-720
Cow position: chr21:11452475-11452131 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 204
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 132, 83

Conread position: 397-712
Cow position: chr21:13184735-13185051 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 66

Conread position: 401-547
Cow position: chr21:4096280-4096426 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 23, 60

Conread position: 401-719
Cow position: chr21:4789553-4789232 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 19, 65

Conread position: 409-646
Cow position: chr21:28736274-28736516 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 11, 209

Conread position: 421-710
Cow position: chr21:47942062-47942358 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 205
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 150, 32

Conread position: 422-710
Cow position: chr21:40683330-40683034 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 85, 38

Conread position: 424-710
Cow position: chr21:4716137-4716427 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 164, 10

Conread position: 429-707
Cow position: chr21:35774060-35774349 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 7, 0

Conread position: 443-722
Cow position: chr21:23708382-23708675 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 83, 18

Conread position: 455-712
Cow position: chr21:26237278-26237544 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 19

Conread position: 463-669
Cow position: chr21:30562639-30562848 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 103, 131

Show alignments to all cow chromosomes.