Cow genome map

Conread name: Ss1.1-Pig4-TMW8022G06.3

Conread position: 119-453
Cow position: chr22:27284654-27285001 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 232
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 26, 44

Conread position: 125-697
Cow position: chr22:6332353-6332937 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 105

Conread position: 125-697
Cow position: chr22:19143056-19142465 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 269

Conread position: 125-697
Cow position: chr22:31334401-31333820 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 224

Conread position: 125-720
Cow position: chr22:560067-559458 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 185

Conread position: 125-720
Cow position: chr22:18815744-18815116 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 125-720
Cow position: chr22:36860897-36860290 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 267

Conread position: 125-720
Cow position: chr22:44934618-44935219 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 103

Conread position: 135-720
Cow position: chr22:694269-694871 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 66

Conread position: 135-720
Cow position: chr22:11804413-11803804 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 135-720
Cow position: chr22:20240199-20239592 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 135-720
Cow position: chr22:27309132-27308527 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 135-720
Cow position: chr22:44491677-44492302 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 412
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 8, 28

Conread position: 136-720
Cow position: chr22:6021307-6021914 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 27

Conread position: 143-589
Cow position: chr22:1806504-1806951 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 203

Conread position: 147-727
Cow position: chr22:46617680-46617114 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 81

Conread position: 149-707
Cow position: chr22:11032415-11032988 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 69

Conread position: 155-486
Cow position: chr22:8135440-8135114 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 236
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 8, 126

Conread position: 156-392
Cow position: chr22:284341-284110 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 47, 6

Conread position: 158-597
Cow position: chr22:36551567-36551129 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 302
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 118

Conread position: 158-618
Cow position: chr22:41418627-41418181 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 316
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 38, 125

Conread position: 158-644
Cow position: chr22:2395322-2394821 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 333
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 34, 234

Conread position: 158-707
Cow position: chr22:522722-522158 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 223

Conread position: 161-617
Cow position: chr22:41240048-41240500 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 303
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 40, 155

Conread position: 163-598
Cow position: chr22:36590609-36590160 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 287
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 146, 44

Conread position: 163-611
Cow position: chr22:35913476-35913027 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 31

Conread position: 164-381
Cow position: chr22:36129592-36129815 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 164-438
Cow position: chr22:40378181-40378467 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 48, 59

Conread position: 164-589
Cow position: chr22:31314024-31314454 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-631
Cow position: chr22:44457733-44458212 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 70

Conread position: 164-635
Cow position: chr22:44350984-44350503 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 129

Conread position: 164-636
Cow position: chr22:44368949-44368455 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 328
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 37, 50

Conread position: 164-646
Cow position: chr22:37140591-37141070 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 35

Conread position: 164-646
Cow position: chr22:37292992-37292494 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 229

Conread position: 164-669
Cow position: chr22:15313271-15312751 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 222

Conread position: 164-707
Cow position: chr22:44397128-44397670 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 95

Conread position: 164-712
Cow position: chr22:13674130-13673567 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 154

Conread position: 164-720
Cow position: chr22:1520342-1519770 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 50

Conread position: 164-720
Cow position: chr22:9044816-9045377 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 70

Conread position: 164-720
Cow position: chr22:21590015-21590584 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-720
Cow position: chr22:34169016-34169588 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 230

Conread position: 164-720
Cow position: chr22:39468843-39468271 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-720
Cow position: chr22:42991857-42992424 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 196

Conread position: 171-471
Cow position: chr22:35671670-35671363 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 209
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 30, 218

Conread position: 171-527
Cow position: chr22:14630103-14630467 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-589
Cow position: chr22:24950782-24951221 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 290
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 30, 43

Conread position: 171-710
Cow position: chr22:3802873-3803423 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 217

Conread position: 171-715
Cow position: chr22:1322901-1323452 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 111

Conread position: 171-720
Cow position: chr22:3277673-3277110 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 42

Conread position: 171-720
Cow position: chr22:10909152-10908589 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr22:18027966-18028535 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr22:37267845-37268415 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 176-487
Cow position: chr22:6142688-6142380 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 19

Conread position: 179-588
Cow position: chr22:27997881-27997476 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 263
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 34, 50

Conread position: 180-697
Cow position: chr22:36184453-36184987 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 207

Conread position: 180-720
Cow position: chr22:1879489-1880051 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 32

Conread position: 181-598
Cow position: chr22:36579895-36579465 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 294
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 11, 33

Conread position: 181-646
Cow position: chr22:8737617-8737165 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 47

Conread position: 181-687
Cow position: chr22:291005-290485 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 340
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 84

Conread position: 181-696
Cow position: chr22:38175796-38176316 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 140

Conread position: 185-639
Cow position: chr22:23943442-23942980 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 301
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 29, 272

Conread position: 185-720
Cow position: chr22:40721175-40721733 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 91

Conread position: 193-576
Cow position: chr22:37072375-37071982 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 194-413
Cow position: chr22:28659651-28659428 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 119, 196

Conread position: 195-710
Cow position: chr22:36269926-36270442 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 350
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 38, 195

Conread position: 196-720
Cow position: chr22:326456-325940 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 352
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 21, 15

Conread position: 196-720
Cow position: chr22:537813-538353 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 15

Conread position: 196-720
Cow position: chr22:17327742-17327207 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 69

Conread position: 199-394
Cow position: chr22:96582-96392 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 135, 0

Conread position: 223-720
Cow position: chr22:6502399-6501888 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 97

Conread position: 231-641
Cow position: chr22:37411903-37412305 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 284
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 83, 19

Conread position: 239-589
Cow position: chr22:37993289-37992930 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 75, 39

Conread position: 239-716
Cow position: chr22:37133411-37133900 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 51

Conread position: 250-707
Cow position: chr22:3273412-3272932 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 327
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 59, 226

Conread position: 269-617
Cow position: chr22:1281945-1281585 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 117

Conread position: 311-706
Cow position: chr22:10559848-10560239 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 258
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 83, 72

Conread position: 313-508
Cow position: chr22:17571967-17571771 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 83, 76

Conread position: 316-712
Cow position: chr22:13547923-13547530 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 271
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 43, 14

Conread position: 319-646
Cow position: chr22:4242780-4242453 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 219
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 101, 69

Conread position: 319-707
Cow position: chr22:9089471-9089061 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 271
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 82, 63

Conread position: 322-556
Cow position: chr22:36276462-36276707 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 74, 61

Conread position: 322-720
Cow position: chr22:5937312-5936903 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 288
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 74, 23

Conread position: 334-719
Cow position: chr22:15053572-15053960 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 237
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 62, 76

Conread position: 335-720
Cow position: chr22:316369-316762 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 271
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 164, 49

Conread position: 338-641
Cow position: chr22:4298624-4298918 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 50

Conread position: 338-721
Cow position: chr22:35906525-35906140 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 264
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 168, 44

Conread position: 350-697
Cow position: chr22:4238056-4237707 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 234
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 84

Conread position: 368-612
Cow position: chr22:23770644-23770890 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 28, 20

Conread position: 401-719
Cow position: chr22:3217223-3216911 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 217
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 61

Conread position: 403-707
Cow position: chr22:35916091-35915780 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 7, 59

Conread position: 410-707
Cow position: chr22:31118330-31118006 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 219
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 52

Conread position: 420-721
Cow position: chr22:40370392-40370693 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 209
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 79, 34

Conread position: 422-621
Cow position: chr22:13773471-13773672 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 32, 68

Conread position: 435-614
Cow position: chr22:24536717-24536894 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 28

Conread position: 435-720
Cow position: chr22:30677727-30677438 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 155, 25

Conread position: 435-728
Cow position: chr22:96387-96093 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 25

Conread position: 436-711
Cow position: chr22:44606715-44606440 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 128, 24

Conread position: 441-720
Cow position: chr22:8121122-8120831 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 59, 195

Conread position: 447-720
Cow position: chr22:19536522-19536800 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 50, 6

Conread position: 458-720
Cow position: chr22:40378704-40378976 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 108, 65

Conread position: 470-720
Cow position: chr22:45581916-45582165 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 86, 122

Conread position: 494-710
Cow position: chr22:284057-283832 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 71, 205

Show alignments to all cow chromosomes.