Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022G06.3 |
| Conread position: | 124-694 |
| Cow position: | chr23:36030740-36030155 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 163 |
| Conread position: | 125-471 |
| Cow position: | chr23:28914030-28914386 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 125-697 |
| Cow position: | chr23:2026446-2025857 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 241 |
| Conread position: | 125-697 |
| Cow position: | chr23:19490178-19490769 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 125-720 |
| Cow position: | chr23:15526202-15526813 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 272 |
| Conread position: | 158-589 |
| Cow position: | chr23:4510739-4511177 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 306 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 158-646 |
| Cow position: | chr23:1013116-1012632 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 126 |
| Conread position: | 158-647 |
| Cow position: | chr23:25555856-25556322 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 151 |
| Conread position: | 158-710 |
| Cow position: | chr23:15876899-15876331 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 247 |
| Conread position: | 158-720 |
| Cow position: | chr23:618787-618224 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 76 |
| Conread position: | 161-570 |
| Cow position: | chr23:19450789-19451201 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 69 |
| Conread position: | 161-641 |
| Cow position: | chr23:16614761-16614273 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 227 |
| Conread position: | 162-634 |
| Cow position: | chr23:2312566-2312083 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 52 |
| Conread position: | 162-668 |
| Cow position: | chr23:28025346-28025855 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 329 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 237 |
| Conread position: | 162-707 |
| Cow position: | chr23:27971217-27971766 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 363 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 164-589 |
| Cow position: | chr23:15219226-15218789 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 226 |
| Conread position: | 164-605 |
| Cow position: | chr23:13510339-13510763 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 125 |
| Conread position: | 164-635 |
| Cow position: | chr23:2717071-2717544 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 179 |
| Conread position: | 164-637 |
| Cow position: | chr23:17186393-17186868 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 164-687 |
| Cow position: | chr23:4639944-4639410 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 180 |
| Conread position: | 164-697 |
| Cow position: | chr23:3880401-3879859 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 222 |
| Conread position: | 164-697 |
| Cow position: | chr23:4817700-4818248 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 224 |
| Conread position: | 164-697 |
| Cow position: | chr23:4889363-4889912 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 117 |
| Conread position: | 164-697 |
| Cow position: | chr23:11779465-11780006 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 126 |
| Conread position: | 164-697 |
| Cow position: | chr23:22146620-22146085 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 180 |
| Conread position: | 164-697 |
| Cow position: | chr23:27400185-27400748 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 225 |
| Conread position: | 164-720 |
| Cow position: | chr23:15177753-15178321 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 61 |
| Conread position: | 164-720 |
| Cow position: | chr23:19949919-19949343 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 77 |
| Conread position: | 166-693 |
| Cow position: | chr23:20155539-20154991 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 171-458 |
| Cow position: | chr23:4360493-4360787 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 171-720 |
| Cow position: | chr23:3706806-3707373 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 220 |
| Conread position: | 178-592 |
| Cow position: | chr23:7354107-7354519 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 268 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 70, 20 |
| Conread position: | 179-453 |
| Cow position: | chr23:14948047-14947776 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 141, 204 |
| Conread position: | 180-716 |
| Cow position: | chr23:16498532-16497995 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 181-482 |
| Cow position: | chr23:7336816-7337124 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 185-697 |
| Cow position: | chr23:2758592-2759116 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 192-587 |
| Cow position: | chr23:2341784-2342186 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 196 |
| Conread position: | 195-709 |
| Cow position: | chr23:7369258-7369762 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 63 |
| Conread position: | 196-697 |
| Cow position: | chr23:28367809-28367300 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 128 |
| Conread position: | 196-710 |
| Cow position: | chr23:29451628-29451113 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 196-720 |
| Cow position: | chr23:5873853-5873329 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 196-720 |
| Cow position: | chr23:23171213-23171749 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 198-589 |
| Cow position: | chr23:11077494-11077105 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 111, 190 |
| Conread position: | 199-716 |
| Cow position: | chr23:25683220-25682710 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 199-720 |
| Cow position: | chr23:965781-965250 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 194 |
| Conread position: | 207-719 |
| Cow position: | chr23:2781245-2780719 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 181 |
| Conread position: | 216-646 |
| Cow position: | chr23:15042009-15041596 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 9 |
| Conread position: | 233-720 |
| Cow position: | chr23:8299619-8299131 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 334 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 53, 71 |
| Conread position: | 239-717 |
| Cow position: | chr23:6220008-6220500 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 70, 101 |
| Conread position: | 241-692 |
| Cow position: | chr23:2576183-2576650 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 124 |
| Conread position: | 265-714 |
| Cow position: | chr23:38581520-38581954 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 40 |
| Conread position: | 269-636 |
| Cow position: | chr23:1401739-1401380 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 269-720 |
| Cow position: | chr23:14964258-14963806 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 72 |
| Conread position: | 278-394 |
| Cow position: | chr23:25593612-25593725 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 285-646 |
| Cow position: | chr23:8286831-8287201 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 290-710 |
| Cow position: | chr23:29402913-29402484 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 296-720 |
| Cow position: | chr23:1956715-1957133 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 311-628 |
| Cow position: | chr23:948960-948654 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 130, 51 |
| Conread position: | 312-617 |
| Cow position: | chr23:3180818-3181119 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 86, 70 |
| Conread position: | 316-542 |
| Cow position: | chr23:4753932-4754165 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 44, 8 |
| Conread position: | 319-720 |
| Cow position: | chr23:18127440-18127043 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 65 |
| Conread position: | 328-646 |
| Cow position: | chr23:25534165-25534485 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 70, 61 |
| Conread position: | 329-720 |
| Cow position: | chr23:26159878-26159462 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 67, 9 |
| Conread position: | 343-720 |
| Cow position: | chr23:14262717-14263114 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 289 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 344-544 |
| Cow position: | chr23:7045579-7045378 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 344-645 |
| Cow position: | chr23:30563280-30563589 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 344-716 |
| Cow position: | chr23:13511973-13512353 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 346-706 |
| Cow position: | chr23:16236590-16236230 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 358-548 |
| Cow position: | chr23:2440978-2440788 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 369-707 |
| Cow position: | chr23:2794368-2794022 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 404-720 |
| Cow position: | chr23:31649117-31648774 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 56 |
| Conread position: | 417-716 |
| Cow position: | chr23:28108616-28108919 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 428-589 |
| Cow position: | chr23:14946131-14945969 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 141, 32 |
| Conread position: | 456-711 |
| Cow position: | chr23:22167646-22167910 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 73 |
| Conread position: | 456-719 |
| Cow position: | chr23:38669893-38669616 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 51, 175 |
| Conread position: | 466-720 |
| Cow position: | chr23:22943163-22942903 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 104, 80 |
| Conread position: | 472-710 |
| Cow position: | chr23:30237259-30237507 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 495-720 |
| Cow position: | chr23:14972959-14972727 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 20 |
Show alignments to all cow chromosomes.