Cow genome map

Conread name: Ss1.1-Pig4-TMW8022G06.3

Conread position: 125-558
Cow position: chr24:36709079-36709536 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 307
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 18

Conread position: 125-696
Cow position: chr24:147890-147299 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 269

Conread position: 125-697
Cow position: chr24:9544784-9545366 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 138

Conread position: 128-453
Cow position: chr24:40193241-40193573 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 44, 148

Conread position: 128-720
Cow position: chr24:6337107-6337722 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 313

Conread position: 135-535
Cow position: chr24:12484587-12484175 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 248
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 8, 83

Conread position: 135-720
Cow position: chr24:5992495-5991892 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 135-728
Cow position: chr24:6084798-6085407 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 136-715
Cow position: chr24:14871580-14870994 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 210

Conread position: 156-646
Cow position: chr24:32846452-32846960 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 139

Conread position: 158-407
Cow position: chr24:6064966-6064712 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 95

Conread position: 158-707
Cow position: chr24:8151503-8150966 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 124

Conread position: 158-716
Cow position: chr24:38638293-38638865 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 93

Conread position: 158-720
Cow position: chr24:6435236-6435816 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 56

Conread position: 159-531
Cow position: chr24:5942499-5942861 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 241
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 96

Conread position: 159-697
Cow position: chr24:22971851-22972404 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 103

Conread position: 161-507
Cow position: chr24:6475701-6476048 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 239
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 39, 58

Conread position: 162-697
Cow position: chr24:6332935-6332385 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 235

Conread position: 164-569
Cow position: chr24:37200243-37199836 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 76

Conread position: 164-639
Cow position: chr24:12205551-12205057 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 22

Conread position: 164-646
Cow position: chr24:6059664-6060153 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 118

Conread position: 164-695
Cow position: chr24:12129301-12128753 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 228

Conread position: 164-697
Cow position: chr24:12334995-12334445 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 225

Conread position: 164-697
Cow position: chr24:19834154-19834708 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 308

Conread position: 164-720
Cow position: chr24:4414768-4414200 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-720
Cow position: chr24:12086970-12087542 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 180

Conread position: 164-721
Cow position: chr24:36559011-36558431 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 146

Conread position: 165-697
Cow position: chr24:6406794-6407346 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 224

Conread position: 166-720
Cow position: chr24:29188056-29188626 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 228

Conread position: 171-416
Cow position: chr24:8031061-8031312 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 43

Conread position: 171-716
Cow position: chr24:12700046-12699490 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 375
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr24:6024333-6023772 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr24:9187963-9187409 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 219

Conread position: 171-720
Cow position: chr24:23505094-23504528 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr24:29305550-29304980 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr24:44018304-44018841 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-728
Cow position: chr24:12109936-12109358 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 49

Conread position: 178-521
Cow position: chr24:15248580-15248237 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 215
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 85, 39

Conread position: 178-565
Cow position: chr24:6049337-6049723 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 260
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 164, 79

Conread position: 178-687
Cow position: chr24:19324668-19324150 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 113

Conread position: 179-639
Cow position: chr24:6328253-6327782 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 35

Conread position: 179-720
Cow position: chr24:13233033-13233591 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 181-440
Cow position: chr24:28210302-28210033 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 189
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 49

Conread position: 181-450
Cow position: chr24:14383811-14383538 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 22, 208

Conread position: 181-710
Cow position: chr24:6659709-6659173 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 129

Conread position: 182-682
Cow position: chr24:40655833-40656341 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 24

Conread position: 195-504
Cow position: chr24:12162709-12163021 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 210
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 118, 105

Conread position: 195-697
Cow position: chr24:33934172-33934700 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 67

Conread position: 196-487
Cow position: chr24:29182949-29183244 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 190

Conread position: 196-557
Cow position: chr24:14302279-14302641 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 238
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 111, 168

Conread position: 196-718
Cow position: chr24:7090172-7089636 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 192

Conread position: 201-503
Cow position: chr24:13321967-13322266 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 205
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 105, 88

Conread position: 206-574
Cow position: chr24:43060115-43060472 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 257
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 190, 30

Conread position: 210-529
Cow position: chr24:12143523-12143203 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 220
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 105, 21

Conread position: 216-525
Cow position: chr24:11866430-11866117 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 218
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 94, 170

Conread position: 216-712
Cow position: chr24:25467798-25467303 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 122

Conread position: 228-720
Cow position: chr24:14389711-14389200 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 346
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 75, 79

Conread position: 232-567
Cow position: chr24:40975867-40975533 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 227
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 81, 153

Conread position: 239-720
Cow position: chr24:17696141-17695646 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 152

Conread position: 246-700
Cow position: chr24:34494308-34493867 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 19

Conread position: 290-703
Cow position: chr24:12238189-12238608 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 276
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 19, 154

Conread position: 292-710
Cow position: chr24:14881701-14881286 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 22

Conread position: 292-721
Cow position: chr24:9091167-9090717 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 308
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 17, 44

Conread position: 311-508
Cow position: chr24:27147627-27147823 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 85, 73

Conread position: 311-517
Cow position: chr24:16535346-16535145 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 84, 50

Conread position: 311-640
Cow position: chr24:14349111-14349432 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 205
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 77, 39

Conread position: 314-716
Cow position: chr24:6675528-6675939 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 292
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 69, 207

Conread position: 318-720
Cow position: chr24:6142018-6142417 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 276
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 100, 24

Conread position: 320-710
Cow position: chr24:16097479-16097851 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 273
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 76, 68

Conread position: 321-697
Cow position: chr24:14754598-14754998 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 274
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 74, 65

Conread position: 342-624
Cow position: chr24:16855925-16856208 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 185
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 40

Conread position: 343-646
Cow position: chr24:31006478-31006181 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 19

Conread position: 343-707
Cow position: chr24:40304976-40305350 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 50, 40

Conread position: 351-715
Cow position: chr24:17321660-17322041 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 258
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 45, 33

Conread position: 351-720
Cow position: chr24:13044675-13044308 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 258
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 45, 37

Conread position: 359-706
Cow position: chr24:17370996-17370652 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 28

Conread position: 368-630
Cow position: chr24:17302516-17302256 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 179
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 7

Conread position: 368-712
Cow position: chr24:6129802-6130153 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 28, 16

Conread position: 394-716
Cow position: chr24:35841070-35840734 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 234
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 24, 68

Conread position: 397-718
Cow position: chr24:6353164-6353476 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 240
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 170, 13

Conread position: 422-707
Cow position: chr24:37320556-37320270 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 68, 41

Conread position: 422-725
Cow position: chr24:29408673-29408365 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 9, 16

Conread position: 423-637
Cow position: chr24:43809986-43810198 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 148, 40

Conread position: 435-696
Cow position: chr24:6064706-6064448 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 140, 25

Conread position: 437-719
Cow position: chr24:17409522-17409810 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 65, 26

Conread position: 480-717
Cow position: chr24:13513143-13512896 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 36

Conread position: 502-716
Cow position: chr24:36480849-36480627 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 198

Show alignments to all cow chromosomes.