Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022G06.3 |
| Conread position: | 3-308 |
| Cow position: | chr25:11932514-11932203 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 91-715 |
| Cow position: | chr25:18449974-18450603 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 45 |
| Conread position: | 125-548 |
| Cow position: | chr25:26879872-26880297 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 175 |
| Conread position: | 125-697 |
| Cow position: | chr25:34346334-34345730 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 131 |
| Conread position: | 164-385 |
| Cow position: | chr25:26279968-26280195 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 164-697 |
| Cow position: | chr25:13781758-13782307 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 164-697 |
| Cow position: | chr25:18889019-18888468 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 164-697 |
| Cow position: | chr25:20630354-20630902 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 224 |
| Conread position: | 164-720 |
| Cow position: | chr25:22148264-22148832 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 166-720 |
| Cow position: | chr25:25507430-25507998 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 195 |
| Conread position: | 168-638 |
| Cow position: | chr25:39557701-39557234 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 31 |
| Conread position: | 169-720 |
| Cow position: | chr25:18193033-18192465 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 171-375 |
| Cow position: | chr25:32580686-32580897 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 171-678 |
| Cow position: | chr25:18182467-18182975 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 176 |
| Conread position: | 178-720 |
| Cow position: | chr25:35087198-35086658 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 360 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 111, 20 |
| Conread position: | 181-653 |
| Cow position: | chr25:18326167-18325685 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 315 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 17, 212 |
| Conread position: | 181-694 |
| Cow position: | chr25:17559810-17559290 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 181-697 |
| Cow position: | chr25:3377486-3376965 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 341 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 11, 209 |
| Conread position: | 196-635 |
| Cow position: | chr25:12758329-12757879 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 271 |
| Conread position: | 196-707 |
| Cow position: | chr25:24659439-24658929 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 10 |
| Conread position: | 196-716 |
| Cow position: | chr25:18274009-18273480 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 192 |
| Conread position: | 199-720 |
| Cow position: | chr25:17588794-17588261 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 187 |
| Conread position: | 199-720 |
| Cow position: | chr25:19020589-19020062 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 352 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 233-529 |
| Cow position: | chr25:37466044-37466337 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 64, 85 |
| Conread position: | 234-521 |
| Cow position: | chr25:30132930-30132648 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 154 |
| Conread position: | 239-720 |
| Cow position: | chr25:20774572-20774076 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 147 |
| Conread position: | 264-712 |
| Cow position: | chr25:24947278-24946836 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 295 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 265-720 |
| Cow position: | chr25:24216632-24216178 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 121 |
| Conread position: | 265-725 |
| Cow position: | chr25:19407623-19408078 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 268-721 |
| Cow position: | chr25:36636854-36636384 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 277-638 |
| Cow position: | chr25:27525298-27524935 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 109 |
| Conread position: | 278-640 |
| Cow position: | chr25:33259267-33259624 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 31, 86 |
| Conread position: | 282-720 |
| Cow position: | chr25:12941824-12941376 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 79 |
| Conread position: | 289-712 |
| Cow position: | chr25:30149941-30149529 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 297 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 317-720 |
| Cow position: | chr25:18305034-18305434 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 277 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 369-644 |
| Cow position: | chr25:32901851-32902131 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 382-716 |
| Cow position: | chr25:30266447-30266786 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 87 |
| Conread position: | 400-587 |
| Cow position: | chr25:18251930-18251739 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 401-715 |
| Cow position: | chr25:11931810-11931489 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 419-720 |
| Cow position: | chr25:15364943-15365248 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 56, 35 |
| Conread position: | 424-710 |
| Cow position: | chr25:13454589-13454299 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 429-710 |
| Cow position: | chr25:18212904-18212621 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 126, 31 |
| Conread position: | 448-720 |
| Cow position: | chr25:34506674-34506393 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 118, 271 |
| Conread position: | 457-646 |
| Cow position: | chr25:32988232-32988040 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 6 |
| Conread position: | 473-644 |
| Cow position: | chr25:30519514-30519676 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 473-720 |
| Cow position: | chr25:17655479-17655736 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 64 |
Show alignments to all cow chromosomes.