Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022G06.3 |
| Conread position: | 125-587 |
| Cow position: | chr27:23335802-23336280 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 134 |
| Conread position: | 125-720 |
| Cow position: | chr27:3234901-3234285 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 149 |
| Conread position: | 125-720 |
| Cow position: | chr27:26325708-26326317 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 269 |
| Conread position: | 135-452 |
| Cow position: | chr27:15541974-15542304 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 158-603 |
| Cow position: | chr27:27195938-27195492 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 139, 22 |
| Conread position: | 161-458 |
| Cow position: | chr27:22673015-22673317 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 39, 230 |
| Conread position: | 161-640 |
| Cow position: | chr27:26036100-26035625 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 59 |
| Conread position: | 161-694 |
| Cow position: | chr27:27414553-27415104 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 164-385 |
| Cow position: | chr27:27663651-27663873 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 164-542 |
| Cow position: | chr27:5911547-5911932 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 225 |
| Conread position: | 164-651 |
| Cow position: | chr27:15036908-15036417 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 180 |
| Conread position: | 164-655 |
| Cow position: | chr27:28079123-28079615 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 146 |
| Conread position: | 164-697 |
| Cow position: | chr27:14459771-14459218 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 181 |
| Conread position: | 164-706 |
| Cow position: | chr27:9330407-9330969 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 300 |
| Conread position: | 164-720 |
| Cow position: | chr27:9992518-9991949 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 180 |
| Conread position: | 164-720 |
| Cow position: | chr27:28892281-28892846 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 171-436 |
| Cow position: | chr27:20135375-20135098 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 221 |
| Conread position: | 171-639 |
| Cow position: | chr27:11095493-11095969 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 215 |
| Conread position: | 171-639 |
| Cow position: | chr27:30273518-30273038 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 178-566 |
| Cow position: | chr27:24994956-24994570 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 179-525 |
| Cow position: | chr27:26554968-26554626 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 179-644 |
| Cow position: | chr27:17319795-17319332 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 122 |
| Conread position: | 181-697 |
| Cow position: | chr27:15636651-15636118 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 208 |
| Conread position: | 184-550 |
| Cow position: | chr27:30202718-30203086 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 196-697 |
| Cow position: | chr27:1210070-1210581 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 154 |
| Conread position: | 216-502 |
| Cow position: | chr27:24215531-24215831 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 71, 42 |
| Conread position: | 235-497 |
| Cow position: | chr27:16551213-16551463 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 250-569 |
| Cow position: | chr27:29854119-29854442 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 259-697 |
| Cow position: | chr27:13898105-13898550 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 6 |
| Conread position: | 271-477 |
| Cow position: | chr27:25804110-25803900 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 27, 115 |
| Conread position: | 316-696 |
| Cow position: | chr27:1848493-1848116 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 319-710 |
| Cow position: | chr27:2377367-2377752 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 344-719 |
| Cow position: | chr27:1575467-1575843 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 349-618 |
| Cow position: | chr27:15126441-15126727 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 349-712 |
| Cow position: | chr27:23905115-23904753 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 351-720 |
| Cow position: | chr27:1677699-1677333 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 397-697 |
| Cow position: | chr27:27663916-27664228 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 421-697 |
| Cow position: | chr27:25057862-25058143 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 145, 39 |
| Conread position: | 422-710 |
| Cow position: | chr27:8568157-8568449 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 144, 38 |
| Conread position: | 426-644 |
| Cow position: | chr27:21286944-21286722 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 141, 37 |
| Conread position: | 463-646 |
| Cow position: | chr27:12747818-12748003 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 503-720 |
| Cow position: | chr27:3170159-3169959 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 170, 46 |
| Conread position: | 533-716 |
| Cow position: | chr27:15275009-15274817 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.