Cow genome map

Conread name: Ss1.1-Pig4-TMW8022G06.3

Conread position: 55-720
Cow position: chr28:484975-484299 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 307
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 254, 286

Conread position: 121-710
Cow position: chr28:33247389-33246792 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 20

Conread position: 125-527
Cow position: chr28:2724243-2723828 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 285
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 18, 38

Conread position: 125-589
Cow position: chr28:3020037-3019546 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 331
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 11, 7

Conread position: 125-680
Cow position: chr28:1814183-1813608 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 269

Conread position: 125-707
Cow position: chr28:18519764-18519167 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 58

Conread position: 125-709
Cow position: chr28:17666621-17666020 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 125

Conread position: 125-720
Cow position: chr28:14704707-14704091 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 274

Conread position: 126-720
Cow position: chr28:5802715-5803336 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 86

Conread position: 135-706
Cow position: chr28:24668311-24668892 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 229

Conread position: 136-697
Cow position: chr28:26425559-26424980 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 252

Conread position: 138-719
Cow position: chr28:6538569-6537969 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 255

Conread position: 156-407
Cow position: chr28:7789230-7788977 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 170
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 156

Conread position: 158-450
Cow position: chr28:25169355-25169064 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 121

Conread position: 158-566
Cow position: chr28:22064667-22064261 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 124

Conread position: 158-646
Cow position: chr28:7811183-7811655 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 335
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 59, 53

Conread position: 161-336
Cow position: chr28:9420510-9420329 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 31, 73

Conread position: 164-418
Cow position: chr28:17389207-17389466 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 37, 66

Conread position: 164-636
Cow position: chr28:5113571-5113090 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 224

Conread position: 164-637
Cow position: chr28:9268596-9269059 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 314
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 35, 85

Conread position: 164-697
Cow position: chr28:783401-783931 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 104

Conread position: 164-697
Cow position: chr28:1505594-1506141 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 176

Conread position: 164-697
Cow position: chr28:5750973-5750433 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 98

Conread position: 164-697
Cow position: chr28:7002721-7003270 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 22

Conread position: 164-697
Cow position: chr28:12409501-12408963 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 176

Conread position: 164-697
Cow position: chr28:32791650-32791107 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 65

Conread position: 164-707
Cow position: chr28:29820730-29821280 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 120

Conread position: 164-707
Cow position: chr28:33253028-33253590 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 224

Conread position: 164-716
Cow position: chr28:1167152-1166587 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 230

Conread position: 164-716
Cow position: chr28:24589577-24590150 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 55

Conread position: 164-720
Cow position: chr28:5566879-5567433 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 224

Conread position: 164-720
Cow position: chr28:5938209-5938780 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-720
Cow position: chr28:13460698-13461272 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 164-720
Cow position: chr28:22260427-22259855 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 225

Conread position: 166-697
Cow position: chr28:8379783-8380338 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 161

Conread position: 168-720
Cow position: chr28:10646672-10646129 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 374
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 194

Conread position: 171-457
Cow position: chr28:7823273-7823566 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 202
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 30, 43

Conread position: 171-699
Cow position: chr28:27678299-27678807 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 356
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 63, 14

Conread position: 171-720
Cow position: chr28:10072007-10072572 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 49

Conread position: 172-720
Cow position: chr28:14751274-14751840 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 42

Conread position: 180-566
Cow position: chr28:25714008-25713615 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 242
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 171

Conread position: 181-697
Cow position: chr28:12151047-12151581 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 211

Conread position: 188-644
Cow position: chr28:8684973-8684520 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 308
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 26, 149

Conread position: 189-729
Cow position: chr28:29761176-29760617 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 161

Conread position: 196-488
Cow position: chr28:22232662-22232365 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 113, 190

Conread position: 196-500
Cow position: chr28:6779579-6779271 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 204
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 55, 70

Conread position: 196-707
Cow position: chr28:3191494-3190971 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 63

Conread position: 196-710
Cow position: chr28:21360240-21360779 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 146

Conread position: 196-720
Cow position: chr28:24884218-24883689 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 352
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 21, 15

Conread position: 199-636
Cow position: chr28:6232011-6231565 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 144

Conread position: 203-707
Cow position: chr28:1386626-1386117 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 111

Conread position: 205-510
Cow position: chr28:32329755-32329438 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 107, 10

Conread position: 207-646
Cow position: chr28:10581318-10580872 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 155

Conread position: 211-710
Cow position: chr28:8720170-8719673 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 68

Conread position: 216-710
Cow position: chr28:15586867-15587375 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 330
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 73, 179

Conread position: 219-710
Cow position: chr28:5765526-5766016 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 339
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 105, 170

Conread position: 232-614
Cow position: chr28:12180276-12179894 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 253
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 16, 25

Conread position: 234-635
Cow position: chr28:1217354-1216947 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 25

Conread position: 239-721
Cow position: chr28:9179429-9179910 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 323
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 70, 147

Conread position: 244-449
Cow position: chr28:2085310-2085517 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 65, 114

Conread position: 252-720
Cow position: chr28:27958866-27958404 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 310
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 57, 94

Conread position: 268-609
Cow position: chr28:15684068-15684425 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 23, 119

Conread position: 269-597
Cow position: chr28:5814209-5814538 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 231
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 8

Conread position: 272-720
Cow position: chr28:7741286-7741738 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 89

Conread position: 278-598
Cow position: chr28:2429123-2429442 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 114

Conread position: 280-691
Cow position: chr28:28439662-28440079 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 39

Conread position: 283-646
Cow position: chr28:10460757-10460392 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 15

Conread position: 309-716
Cow position: chr28:14233063-14232639 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 53

Conread position: 313-611
Cow position: chr28:24540972-24541268 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 82, 67

Conread position: 314-716
Cow position: chr28:24890708-24891099 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 260
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 82, 69

Conread position: 319-707
Cow position: chr28:4546303-4546679 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 267
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 77, 11

Conread position: 320-712
Cow position: chr28:28749904-28750271 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 266
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 76, 68

Conread position: 322-538
Cow position: chr28:11490574-11490363 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 74, 22

Conread position: 322-664
Cow position: chr28:2988195-2987846 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 242
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 76, 60

Conread position: 324-721
Cow position: chr28:14194635-14194242 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 274
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 72, 53

Conread position: 327-710
Cow position: chr28:18146836-18146451 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 274
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 69, 61

Conread position: 343-720
Cow position: chr28:24304128-24303734 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 274
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 53, 200

Conread position: 345-640
Cow position: chr28:34858271-34858568 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 44

Conread position: 346-548
Cow position: chr28:592278-592077 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 43

Conread position: 368-697
Cow position: chr28:15035182-15034849 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 30, 20

Conread position: 376-720
Cow position: chr28:1954296-1954652 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 242
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 12

Conread position: 378-539
Cow position: chr28:10873154-10873315 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 6

Conread position: 397-692
Cow position: chr28:7028812-7028519 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 64

Conread position: 403-639
Cow position: chr28:6457354-6457126 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 53

Conread position: 403-716
Cow position: chr28:7788924-7788602 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 15, 59

Conread position: 417-720
Cow position: chr28:10470493-10470801 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 212
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 89, 43

Conread position: 417-722
Cow position: chr28:10496548-10496234 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 45, 136

Conread position: 421-697
Cow position: chr28:7027268-7026983 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 89, 39

Conread position: 421-720
Cow position: chr28:17251456-17251152 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 27

Conread position: 427-564
Cow position: chr28:11025898-11025761 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 128, 33

Conread position: 437-645
Cow position: chr28:33484453-33484664 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 95, 23

Conread position: 442-624
Cow position: chr28:523302-523484 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 127, 18

Conread position: 459-697
Cow position: chr28:34565080-34565313 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 486-720
Cow position: chr28:2085513-2085755 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 80, 15

Show alignments to all cow chromosomes.