Cow genome map

Conread name: Ss1.1-Pig4-TMW8022G06.3

Conread position: 31-720
Cow position: chr29:13582644-13583340 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 42

Conread position: 122-638
Cow position: chr29:21238729-21238222 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 41

Conread position: 125-416
Cow position: chr29:27249698-27249396 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 18, 94

Conread position: 125-697
Cow position: chr29:20251810-20252406 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 275

Conread position: 125-707
Cow position: chr29:14210922-14210322 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 110

Conread position: 125-720
Cow position: chr29:10647604-10646988 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 243

Conread position: 125-720
Cow position: chr29:27980280-27979664 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 135-557
Cow position: chr29:15968206-15967773 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 84

Conread position: 135-707
Cow position: chr29:5982056-5981461 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 100

Conread position: 135-718
Cow position: chr29:14085473-14084869 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 259

Conread position: 135-720
Cow position: chr29:32559099-32558495 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 138-484
Cow position: chr29:34926137-34926494 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 252
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 29, 24

Conread position: 138-720
Cow position: chr29:251437-252007 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 101

Conread position: 143-479
Cow position: chr29:15948858-15948511 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 201
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 58, 249

Conread position: 158-616
Cow position: chr29:35263376-35263814 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 71

Conread position: 158-703
Cow position: chr29:11227962-11227416 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 180

Conread position: 158-710
Cow position: chr29:32804123-32804668 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 367
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 34, 87

Conread position: 158-715
Cow position: chr29:9620106-9620670 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 133

Conread position: 158-716
Cow position: chr29:34873513-34874071 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 153

Conread position: 161-703
Cow position: chr29:31024093-31023565 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 34

Conread position: 161-706
Cow position: chr29:39368574-39369110 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 92

Conread position: 161-710
Cow position: chr29:37164827-37165383 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 25

Conread position: 162-716
Cow position: chr29:5958290-5958851 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 119

Conread position: 163-449
Cow position: chr29:14216657-14216948 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 38, 197

Conread position: 164-442
Cow position: chr29:2690596-2690887 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 37, 230

Conread position: 164-443
Cow position: chr29:16023228-16023508 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 28, 226

Conread position: 164-504
Cow position: chr29:41366996-41366652 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 34, 118

Conread position: 164-554
Cow position: chr29:2840688-2840288 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 224

Conread position: 164-636
Cow position: chr29:6265585-6265095 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 222

Conread position: 164-665
Cow position: chr29:40502288-40501786 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 200

Conread position: 164-694
Cow position: chr29:7430528-7429982 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 66

Conread position: 164-694
Cow position: chr29:43323249-43323795 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 202

Conread position: 164-697
Cow position: chr29:10823284-10822744 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 228

Conread position: 164-697
Cow position: chr29:25931848-25931291 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 222

Conread position: 164-697
Cow position: chr29:26164137-26163597 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 197

Conread position: 164-697
Cow position: chr29:34799115-34798570 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 180

Conread position: 164-707
Cow position: chr29:39079016-39078458 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 230

Conread position: 164-720
Cow position: chr29:14586612-14587179 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 223

Conread position: 164-720
Cow position: chr29:32540784-32541356 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 176

Conread position: 164-720
Cow position: chr29:45460411-45461003 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 227

Conread position: 166-709
Cow position: chr29:42803109-42803662 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 86

Conread position: 168-645
Cow position: chr29:7087317-7087787 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 324
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 219, 25

Conread position: 171-460
Cow position: chr29:15894154-15893856 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 208
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr29:7845078-7845648 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 218

Conread position: 171-720
Cow position: chr29:18856248-18855689 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 43

Conread position: 171-720
Cow position: chr29:31182100-31182664 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-720
Cow position: chr29:35815279-35814714 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 171-721
Cow position: chr29:669362-668808 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 43

Conread position: 172-640
Cow position: chr29:19885764-19886254 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 323
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 29, 42

Conread position: 177-710
Cow position: chr29:6213227-6213773 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 77

Conread position: 179-707
Cow position: chr29:34585084-34585594 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 135

Conread position: 181-523
Cow position: chr29:9643054-9642706 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 212

Conread position: 181-556
Cow position: chr29:2949629-2949270 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 255
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 33, 53

Conread position: 181-646
Cow position: chr29:32286909-32287362 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 323
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 53, 7

Conread position: 183-720
Cow position: chr29:31096673-31096121 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 359
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 38

Conread position: 184-641
Cow position: chr29:8715112-8714644 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 301
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 13, 72

Conread position: 187-716
Cow position: chr29:609910-609387 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 363
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 13, 26

Conread position: 189-697
Cow position: chr29:19622565-19622043 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 71

Conread position: 192-697
Cow position: chr29:646517-647028 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 43

Conread position: 196-646
Cow position: chr29:2100575-2101032 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 31

Conread position: 196-707
Cow position: chr29:38227703-38228227 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 162

Conread position: 196-710
Cow position: chr29:32891522-32892042 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 34

Conread position: 196-720
Cow position: chr29:21426300-21425755 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 163

Conread position: 196-720
Cow position: chr29:23976848-23977385 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 166

Conread position: 198-636
Cow position: chr29:21264671-21265102 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 111

Conread position: 212-720
Cow position: chr29:45586636-45586119 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 180

Conread position: 217-522
Cow position: chr29:30259838-30259532 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 92, 64

Conread position: 228-712
Cow position: chr29:43408863-43408394 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 119

Conread position: 231-720
Cow position: chr29:8774547-8774055 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 328
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 84, 159

Conread position: 239-720
Cow position: chr29:47685-47177 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 99

Conread position: 244-720
Cow position: chr29:8664289-8664769 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 324
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 65, 38

Conread position: 259-697
Cow position: chr29:45205291-45205738 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 6

Conread position: 271-720
Cow position: chr29:19654431-19654888 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 86

Conread position: 280-541
Cow position: chr29:19480067-19480326 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 8, 20

Conread position: 297-720
Cow position: chr29:38237699-38237264 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 41

Conread position: 311-541
Cow position: chr29:24731783-24732010 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 27

Conread position: 311-567
Cow position: chr29:16731287-16731035 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 175
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 72

Conread position: 311-697
Cow position: chr29:15997823-15997415 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 269
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 83, 34

Conread position: 319-697
Cow position: chr29:801542-801161 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 266
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 76

Conread position: 320-491
Cow position: chr29:35190780-35190608 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 63

Conread position: 327-716
Cow position: chr29:2747573-2747185 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 277
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 69, 56

Conread position: 343-633
Cow position: chr29:42147925-42148213 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 17

Conread position: 344-716
Cow position: chr29:14448780-14449153 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 248
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 52, 44

Conread position: 344-718
Cow position: chr29:27263019-27262637 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 40

Conread position: 347-603
Cow position: chr29:8061247-8060987 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 177
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 28

Conread position: 348-707
Cow position: chr29:27332738-27332370 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 230
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 114

Conread position: 351-592
Cow position: chr29:43791305-43791546 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 45, 37

Conread position: 358-716
Cow position: chr29:3176518-3176164 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 253
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 37, 26

Conread position: 361-627
Cow position: chr29:15946927-15946661 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 27

Conread position: 384-732
Cow position: chr29:24336083-24335729 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 249
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 36, 70

Conread position: 407-646
Cow position: chr29:16023512-16023752 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 159, 9

Conread position: 420-716
Cow position: chr29:13622892-13622601 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 89, 40

Conread position: 422-710
Cow position: chr29:37609160-37608866 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 216
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 110, 44

Conread position: 438-700
Cow position: chr29:36597604-36597340 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 179
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 133, 50

Conread position: 493-721
Cow position: chr29:10849778-10850012 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 73, 146

Show alignments to all cow chromosomes.