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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8022G06.3
        

               
Conread position:
               
3-702
               

               
Cow position:
               
chr3:19890128-19889455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
716
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
80-710
               

               
Cow position:
               
chr3:33846144-33845518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
522, 371
               

               
Conread position:
               
119-720
               

               
Cow position:
               
chr3:7169763-7170375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
120-696
               

               
Cow position:
               
chr3:8238640-8239221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 83
               

               
Conread position:
               
125-469
               

               
Cow position:
               
chr3:7480668-7480312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 269
               

               
Conread position:
               
125-697
               

               
Cow position:
               
chr3:78026857-78026259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 162
               

               
Conread position:
               
125-707
               

               
Cow position:
               
chr3:19756388-19755772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 269
               

               
Conread position:
               
125-717
               

               
Cow position:
               
chr3:75040600-75039987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 268
               

               
Conread position:
               
125-720
               

               
Cow position:
               
chr3:10240221-10240835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 162
               

               
Conread position:
               
125-720
               

               
Cow position:
               
chr3:18812070-18812673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 223
               

               
Conread position:
               
125-720
               

               
Cow position:
               
chr3:21182128-21181522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
134-721
               

               
Cow position:
               
chr3:48842819-48843427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
135-507
               

               
Cow position:
               
chr3:24315039-24315424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
8, 28
               

               
Conread position:
               
135-581
               

               
Cow position:
               
chr3:20381113-20381574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
135-697
               

               
Cow position:
               
chr3:42447678-42448261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
135-719
               

               
Cow position:
               
chr3:64651199-64651808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
135-720
               

               
Cow position:
               
chr3:7158154-7157548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
135-720
               

               
Cow position:
               
chr3:19879225-19879818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 28
               

               
Conread position:
               
135-720
               

               
Cow position:
               
chr3:36863888-36863286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 28
               

               
Conread position:
               
138-720
               

               
Cow position:
               
chr3:47177697-47177096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
158-399
               

               
Cow position:
               
chr3:46016364-46016605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
158-471
               

               
Cow position:
               
chr3:40339514-40339194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
158-510
               

               
Cow position:
               
chr3:45865519-45865168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
187, 25
               

               
Conread position:
               
158-535
               

               
Cow position:
               
chr3:53411783-53412150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
158-655
               

               
Cow position:
               
chr3:49271505-49271009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
158-710
               

               
Cow position:
               
chr3:42052545-42051996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 163
               

               
Conread position:
               
158-720
               

               
Cow position:
               
chr3:12679244-12678669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
158-720
               

               
Cow position:
               
chr3:32622444-32621868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
158-720
               

               
Cow position:
               
chr3:64357191-64356626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 110
               

               
Conread position:
               
159-646
               

               
Cow position:
               
chr3:24353521-24353995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
150, 99
               

               
Conread position:
               
160-645
               

               
Cow position:
               
chr3:21148124-21147640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
161-477
               

               
Cow position:
               
chr3:23213476-23213152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
5, 229
               

               
Conread position:
               
161-541
               

               
Cow position:
               
chr3:56098818-56099213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 236
               

               
Conread position:
               
161-624
               

               
Cow position:
               
chr3:65582666-65582212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
53, 67
               

               
Conread position:
               
161-712
               

               
Cow position:
               
chr3:79432100-79431542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 56
               

               
Conread position:
               
161-716
               

               
Cow position:
               
chr3:31318773-31319334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 90
               

               
Conread position:
               
163-697
               

               
Cow position:
               
chr3:63270002-63270533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 6
               

               
Conread position:
               
163-710
               

               
Cow position:
               
chr3:40342741-40343289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
163-720
               

               
Cow position:
               
chr3:2710265-2709696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 226
               

               
Conread position:
               
164-471
               

               
Cow position:
               
chr3:30331881-30331566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
164-503
               

               
Cow position:
               
chr3:45894946-45894603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
37, 225
               

               
Conread position:
               
164-510
               

               
Cow position:
               
chr3:45773797-45773449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
34, 135
               

               
Conread position:
               
164-685
               

               
Cow position:
               
chr3:50127028-50126468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 305
               

               
Conread position:
               
164-697
               

               
Cow position:
               
chr3:45975107-45975649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 225
               

               
Conread position:
               
164-697
               

               
Cow position:
               
chr3:59861979-59862531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 118
               

               
Conread position:
               
164-706
               

               
Cow position:
               
chr3:58165693-58166249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 65
               

               
Conread position:
               
164-707
               

               
Cow position:
               
chr3:64016756-64016210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 225
               

               
Conread position:
               
164-710
               

               
Cow position:
               
chr3:19721064-19720513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
164-715
               

               
Cow position:
               
chr3:29579230-29579796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 237
               

               
Conread position:
               
164-716
               

               
Cow position:
               
chr3:6686414-6686977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
164-716
               

               
Cow position:
               
chr3:42995068-42994502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 225
               

               
Conread position:
               
164-720
               

               
Cow position:
               
chr3:2907165-2906599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 122
               

               
Conread position:
               
164-720
               

               
Cow position:
               
chr3:5884148-5884708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
164-720
               

               
Cow position:
               
chr3:30315168-30315733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 180
               

               
Conread position:
               
164-720
               

               
Cow position:
               
chr3:49136934-49136397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
164-720
               

               
Cow position:
               
chr3:49544602-49544033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 59
               

               
Conread position:
               
164-720
               

               
Cow position:
               
chr3:63002942-63002372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 70
               

               
Conread position:
               
164-720
               

               
Cow position:
               
chr3:66620788-66621355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 225
               

               
Conread position:
               
164-720
               

               
Cow position:
               
chr3:72630680-72631237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 194
               

               
Conread position:
               
164-721
               

               
Cow position:
               
chr3:23289729-23289158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
165-720
               

               
Cow position:
               
chr3:70887740-70888312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
166-457
               

               
Cow position:
               
chr3:34845745-34846051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 231
               

               
Conread position:
               
171-523
               

               
Cow position:
               
chr3:41211122-41210762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
171-634
               

               
Cow position:
               
chr3:3841194-3840719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
171-710
               

               
Cow position:
               
chr3:19939504-19940055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 218
               

               
Conread position:
               
171-719
               

               
Cow position:
               
chr3:68873142-68872584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
171-720
               

               
Cow position:
               
chr3:2869391-2869960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
171-720
               

               
Cow position:
               
chr3:3523633-3524196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
171-720
               

               
Cow position:
               
chr3:10095041-10095597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
26, 149
               

               
Conread position:
               
171-720
               

               
Cow position:
               
chr3:18860024-18860589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
171-720
               

               
Cow position:
               
chr3:46860690-46860118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
171-720
               

               
Cow position:
               
chr3:47080800-47080238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
172-656
               

               
Cow position:
               
chr3:63915502-63915010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
174-715
               

               
Cow position:
               
chr3:6877552-6877002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
177-516
               

               
Cow position:
               
chr3:43415762-43416113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 104
               

               
Conread position:
               
177-635
               

               
Cow position:
               
chr3:69100856-69100400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
179-624
               

               
Cow position:
               
chr3:648879-648449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
179-711
               

               
Cow position:
               
chr3:54771500-54772015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 23
               

               
Conread position:
               
179-712
               

               
Cow position:
               
chr3:46817056-46816531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
179-720
               

               
Cow position:
               
chr3:29330662-29330117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 215
               

               
Conread position:
               
180-485
               

               
Cow position:
               
chr3:42432844-42433148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
17, 195
               

               
Conread position:
               
180-645
               

               
Cow position:
               
chr3:67778739-67779196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
180-720
               

               
Cow position:
               
chr3:56339794-56339244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
181-548
               

               
Cow position:
               
chr3:18355647-18355276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
181-635
               

               
Cow position:
               
chr3:46680052-46680515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
20, 6
               

               
Conread position:
               
181-697
               

               
Cow position:
               
chr3:5953557-5953044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
181-697
               

               
Cow position:
               
chr3:53516235-53516754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 207
               

               
Conread position:
               
181-707
               

               
Cow position:
               
chr3:48058733-48058201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
181-716
               

               
Cow position:
               
chr3:56397813-56398352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
181-720
               

               
Cow position:
               
chr3:37969667-37970218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
182-707
               

               
Cow position:
               
chr3:27301941-27301406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
183-589
               

               
Cow position:
               
chr3:58948242-58948663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 203
               

               
Conread position:
               
184-486
               

               
Cow position:
               
chr3:83232615-83232314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
123, 173
               

               
Conread position:
               
184-720
               

               
Cow position:
               
chr3:57484101-57483555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 120
               

               
Conread position:
               
189-687
               

               
Cow position:
               
chr3:43306303-43305815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
190-633
               

               
Cow position:
               
chr3:11303538-11303991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
7, 100
               

               
Conread position:
               
195-484
               

               
Cow position:
               
chr3:18462929-18462638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
195-697
               

               
Cow position:
               
chr3:46503185-46503708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 191
               

               
Conread position:
               
196-364
               

               
Cow position:
               
chr3:56145925-56146097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
196-471
               

               
Cow position:
               
chr3:36118303-36118581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
196-716
               

               
Cow position:
               
chr3:19944874-19945408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
111, 69
               

               
Conread position:
               
196-719
               

               
Cow position:
               
chr3:68699324-68698802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
196-720
               

               
Cow position:
               
chr3:2918102-2918640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
196-720
               

               
Cow position:
               
chr3:4286724-4287261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
196-720
               

               
Cow position:
               
chr3:5994449-5993913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 190
               

               
Conread position:
               
196-720
               

               
Cow position:
               
chr3:40824031-40824565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 145
               

               
Conread position:
               
196-720
               

               
Cow position:
               
chr3:45033387-45033914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
196-720
               

               
Cow position:
               
chr3:66890324-66889795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
199-710
               

               
Cow position:
               
chr3:38493873-38494405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 195
               

               
Conread position:
               
199-718
               

               
Cow position:
               
chr3:48229828-48229301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 79
               

               
Conread position:
               
199-720
               

               
Cow position:
               
chr3:27919071-27919599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
199-720
               

               
Cow position:
               
chr3:37989533-37990061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 49
               

               
Conread position:
               
205-710
               

               
Cow position:
               
chr3:34030256-34029762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
104, 183
               

               
Conread position:
               
216-720
               

               
Cow position:
               
chr3:57753455-57753972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 170
               

               
Conread position:
               
223-624
               

               
Cow position:
               
chr3:18541474-18541066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 115
               

               
Conread position:
               
223-646
               

               
Cow position:
               
chr3:83294244-83293827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
80, 114
               

               
Conread position:
               
223-720
               

               
Cow position:
               
chr3:24445412-24444901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 135
               

               
Conread position:
               
235-720
               

               
Cow position:
               
chr3:52227207-52227697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 65
               

               
Conread position:
               
244-716
               

               
Cow position:
               
chr3:64822784-64823277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 230
               

               
Conread position:
               
253-706
               

               
Cow position:
               
chr3:4666798-4667261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 114
               

               
Conread position:
               
257-716
               

               
Cow position:
               
chr3:77424333-77424790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
259-558
               

               
Cow position:
               
chr3:42144158-42143855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
260-720
               

               
Cow position:
               
chr3:35476605-35476139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
133, 40
               

               
Conread position:
               
261-656
               

               
Cow position:
               
chr3:16899661-16899274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
261-728
               

               
Cow position:
               
chr3:63200318-63200794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 86
               

               
Conread position:
               
268-609
               

               
Cow position:
               
chr3:62788680-62788336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
290-720
               

               
Cow position:
               
chr3:30618192-30617748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
299-591
               

               
Cow position:
               
chr3:13475963-13476255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 90
               

               
Conread position:
               
301-559
               

               
Cow position:
               
chr3:24589022-24588772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 85
               

               
Conread position:
               
311-610
               

               
Cow position:
               
chr3:83945700-83946006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
311-614
               

               
Cow position:
               
chr3:20682368-20682063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
84, 53
               

               
Conread position:
               
312-608
               

               
Cow position:
               
chr3:28300472-28300766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
83, 70
               

               
Conread position:
               
313-513
               

               
Cow position:
               
chr3:58854543-58854748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
314-645
               

               
Cow position:
               
chr3:11541499-11541834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
82, 68
               

               
Conread position:
               
317-646
               

               
Cow position:
               
chr3:63945837-63946175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 58
               

               
Conread position:
               
318-707
               

               
Cow position:
               
chr3:11198790-11198388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
78, 46
               

               
Conread position:
               
319-542
               

               
Cow position:
               
chr3:62733034-62733257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 64
               

               
Conread position:
               
319-716
               

               
Cow position:
               
chr3:24346734-24347128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
321-728
               

               
Cow position:
               
chr3:24644002-24644419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 17
               

               
Conread position:
               
324-721
               

               
Cow position:
               
chr3:15181136-15181528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 65
               

               
Conread position:
               
326-713
               

               
Cow position:
               
chr3:16075268-16075661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
69, 64
               

               
Conread position:
               
332-541
               

               
Cow position:
               
chr3:36877906-36877695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
64, 56
               

               
Conread position:
               
338-503
               

               
Cow position:
               
chr3:34090590-34090427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
57, 45
               

               
Conread position:
               
338-617
               

               
Cow position:
               
chr3:4737085-4736808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
12, 51
               

               
Conread position:
               
338-707
               

               
Cow position:
               
chr3:54326523-54326147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
341-712
               

               
Cow position:
               
chr3:37953208-37952831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 48
               

               
Conread position:
               
344-646
               

               
Cow position:
               
chr3:37625788-37626092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
344-722
               

               
Cow position:
               
chr3:82637899-82638276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
58, 40
               

               
Conread position:
               
347-707
               

               
Cow position:
               
chr3:79314721-79315087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 41
               

               
Conread position:
               
351-720
               

               
Cow position:
               
chr3:2368533-2368165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
354-645
               

               
Cow position:
               
chr3:31574206-31574499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
355-720
               

               
Cow position:
               
chr3:34506546-34506171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
41, 33
               

               
Conread position:
               
358-690
               

               
Cow position:
               
chr3:40345886-40346221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 105
               

               
Conread position:
               
360-519
               

               
Cow position:
               
chr3:24645774-24645929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
369-710
               

               
Cow position:
               
chr3:60264201-60263855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
379-715
               

               
Cow position:
               
chr3:46016871-46017216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 77
               

               
Conread position:
               
384-707
               

               
Cow position:
               
chr3:43318796-43318495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 52
               

               
Conread position:
               
388-715
               

               
Cow position:
               
chr3:52653813-52653475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 67
               

               
Conread position:
               
397-720
               

               
Cow position:
               
chr3:25499833-25499509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
398-720
               

               
Cow position:
               
chr3:67164129-67164462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
401-710
               

               
Cow position:
               
chr3:32612588-32612276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
409-707
               

               
Cow position:
               
chr3:71237895-71237599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
161, 38
               

               
Conread position:
               
419-720
               

               
Cow position:
               
chr3:74058405-74058703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
422-678
               

               
Cow position:
               
chr3:45865228-45864966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
128, 36
               

               
Conread position:
               
424-720
               

               
Cow position:
               
chr3:9401721-9401422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
428-715
               

               
Cow position:
               
chr3:19124461-19124750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
143, 17
               

               
Conread position:
               
431-720
               

               
Cow position:
               
chr3:55892290-55892587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 249
               

               
Conread position:
               
451-646
               

               
Cow position:
               
chr3:39880108-39879916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
48, 78
               

               
Conread position:
               
453-720
               

               
Cow position:
               
chr3:6662257-6662531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
117, 37
               

               
Conread position:
               
456-645
               

               
Cow position:
               
chr3:44649699-44649507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 96
               

               
Conread position:
               
471-719
               

               
Cow position:
               
chr3:78909247-78908991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
94, 26
               

               
Conread position:
               
475-720
               

               
Cow position:
               
chr3:83232212-83231963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
95, 133
               

               
Conread position:
               
479-720
               

               
Cow position:
               
chr3:7478997-7478747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 240
               

               
Conread position:
               
482-716
               

               
Cow position:
               
chr3:15054743-15054511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
512-644
               

               
Cow position:
               
chr3:54814649-54814785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               
Show alignments to all cow chromosomes.