Cow genome map

Conread name: Ss1.1-Pig4-TMW8022I07.5

Conread position: 5-124
Cow position: chr21:10151674-10151553 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 6-111
Cow position: chr21:42348799-42348907 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 6-117
Cow position: chr21:15445200-15445314 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 6-119
Cow position: chr21:45971279-45971395 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 6-120
Cow position: chr21:47802381-47802500 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 6-122
Cow position: chr21:45924-45806 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 13

Conread position: 6-122
Cow position: chr21:725013-725130 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 81

Conread position: 6-122
Cow position: chr21:4795104-4794982 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 6-122
Cow position: chr21:5153496-5153377 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 6-122
Cow position: chr21:23192639-23192758 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 6-122
Cow position: chr21:23672621-23672506 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 17

Conread position: 6-122
Cow position: chr21:29954549-29954667 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 6-122
Cow position: chr21:34658913-34658794 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 6-122
Cow position: chr21:39888865-39888984 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 102
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 40, 53

Conread position: 6-122
Cow position: chr21:40899215-40899096 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 6-122
Cow position: chr21:41974500-41974619 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 6-122
Cow position: chr21:44671632-44671513 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 6-123
Cow position: chr21:16612508-16612388 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 6-123
Cow position: chr21:20162413-20162294 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 18

Conread position: 6-123
Cow position: chr21:30250330-30250449 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 6-124
Cow position: chr21:81949-81828 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 6-124
Cow position: chr21:393900-393779 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 6-124
Cow position: chr21:4279511-4279390 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 6-124
Cow position: chr21:4998608-4998727 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 6-124
Cow position: chr21:5649784-5649664 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 30

Conread position: 6-124
Cow position: chr21:7564444-7564564 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 30

Conread position: 6-124
Cow position: chr21:8985428-8985307 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 6-124
Cow position: chr21:9416121-9416000 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 6-124
Cow position: chr21:13301031-13300910 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 6-124
Cow position: chr21:13409944-13410065 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 103
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 41, 0

Conread position: 6-124
Cow position: chr21:18713162-18713044 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 73

Conread position: 6-124
Cow position: chr21:19702403-19702282 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 6-124
Cow position: chr21:20262455-20262576 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 105
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 6-124
Cow position: chr21:21480304-21480421 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 6-124
Cow position: chr21:23322205-23322323 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 6-124
Cow position: chr21:24130959-24130839 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 6-124
Cow position: chr21:24607264-24607143 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 6-124
Cow position: chr21:24858190-24858069 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 6-124
Cow position: chr21:28734033-28734154 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 6-124
Cow position: chr21:32297632-32297744 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 6-124
Cow position: chr21:32535855-32535736 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 106

Conread position: 6-124
Cow position: chr21:33210077-33209957 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 94

Conread position: 6-124
Cow position: chr21:33350621-33350503 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 103
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 94

Conread position: 6-124
Cow position: chr21:33729313-33729191 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 6-124
Cow position: chr21:33982930-33983052 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 6-124
Cow position: chr21:34391092-34391209 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 42, 68

Conread position: 6-124
Cow position: chr21:35899687-35899565 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 6-124
Cow position: chr21:40244313-40244192 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 6-124
Cow position: chr21:40265712-40265591 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 6-124
Cow position: chr21:40786549-40786428 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 6-124
Cow position: chr21:42414224-42414341 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 93

Conread position: 6-124
Cow position: chr21:42500911-42500789 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 61

Conread position: 6-124
Cow position: chr21:42540342-42540462 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 23

Conread position: 6-124
Cow position: chr21:42913867-42913988 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 6-124
Cow position: chr21:47760654-47760535 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 6-124
Cow position: chr21:48637867-48637988 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 6-125
Cow position: chr21:34738477-34738355 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 6-126
Cow position: chr21:29015013-29015133 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 92

Conread position: 6-126
Cow position: chr21:30231823-30231944 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 95

Conread position: 6-126
Cow position: chr21:30990390-30990512 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 6-128
Cow position: chr21:36297357-36297233 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 7-123
Cow position: chr21:38120985-38120862 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 7-124
Cow position: chr21:643211-643095 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 7-124
Cow position: chr21:7673010-7672891 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 7-124
Cow position: chr21:7716913-7717030 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 91

Conread position: 7-124
Cow position: chr21:17282581-17282461 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 7-124
Cow position: chr21:22718903-22719022 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 89

Conread position: 7-124
Cow position: chr21:23150142-23150261 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 7-124
Cow position: chr21:39403661-39403780 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 7-124
Cow position: chr21:40058683-40058564 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 7-124
Cow position: chr21:48484566-48484682 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 81, 0

Conread position: 7-125
Cow position: chr21:45263144-45263264 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 8-115
Cow position: chr21:27124250-27124362 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 8-122
Cow position: chr21:38900651-38900533 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 8-123
Cow position: chr21:16696245-16696129 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 44, 27

Conread position: 8-123
Cow position: chr21:38918091-38917977 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 91

Conread position: 8-124
Cow position: chr21:4080229-4080112 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 8-124
Cow position: chr21:12366264-12366145 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 8-124
Cow position: chr21:19196290-19196410 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 8-124
Cow position: chr21:27863643-27863761 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 8-124
Cow position: chr21:28599648-28599525 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 8-124
Cow position: chr21:29069452-29069570 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 78

Conread position: 8-124
Cow position: chr21:31159133-31159012 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 8-124
Cow position: chr21:36163086-36163205 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 8-124
Cow position: chr21:37479833-37479717 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 44, 92

Conread position: 8-124
Cow position: chr21:42190292-42190409 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 73, 41

Conread position: 8-126
Cow position: chr21:39401471-39401356 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 9-104
Cow position: chr21:24797568-24797473 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 9-122
Cow position: chr21:28993750-28993866 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 10-124
Cow position: chr21:18155888-18155771 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 10-124
Cow position: chr21:22856089-22855977 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 55

Conread position: 10-124
Cow position: chr21:23683425-23683308 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 22-124
Cow position: chr21:363518-363413 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 146-276
Cow position: chr21:37479452-37479322 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 195-307
Cow position: chr21:13349790-13349900 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 368-609
Cow position: chr21:27037206-27037453 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 8, 103

Conread position: 374-630
Cow position: chr21:40285877-40285626 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 93

Show alignments to all cow chromosomes.