Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022I07.5 |
| Conread position: | 2-122 |
| Cow position: | chr23:39780433-39780310 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 2-124 |
| Cow position: | chr23:4579214-4579341 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-124 |
| Cow position: | chr23:6720455-6720580 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 6-111 |
| Cow position: | chr23:29626231-29626123 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-118 |
| Cow position: | chr23:35366282-35366396 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-120 |
| Cow position: | chr23:21336672-21336789 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-121 |
| Cow position: | chr23:36172365-36172245 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-122 |
| Cow position: | chr23:10554195-10554313 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:208653-208539 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:534046-533929 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 83 |
| Conread position: | 6-124 |
| Cow position: | chr23:1922251-1922371 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 6-124 |
| Cow position: | chr23:4529075-4529196 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:7937723-7937840 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 6-124 |
| Cow position: | chr23:8911295-8911174 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:9712930-9712809 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:10844140-10844022 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 6-124 |
| Cow position: | chr23:11129051-11128928 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:13945574-13945453 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:14739265-14739149 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 89 |
| Conread position: | 6-124 |
| Cow position: | chr23:16073047-16072926 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:16563659-16563539 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 42, 112 |
| Conread position: | 6-124 |
| Cow position: | chr23:18698208-18698330 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:22804540-22804420 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 86 |
| Conread position: | 6-124 |
| Cow position: | chr23:24509518-24509399 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 6-124 |
| Cow position: | chr23:26741632-26741754 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:27529475-27529592 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 6-124 |
| Cow position: | chr23:28053094-28052973 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:29824249-29824368 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 6-124 |
| Cow position: | chr23:30662811-30662928 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 6-124 |
| Cow position: | chr23:36129085-36129202 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 97 |
| Conread position: | 6-124 |
| Cow position: | chr23:39762183-39762064 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 73 |
| Conread position: | 6-125 |
| Cow position: | chr23:29459272-29459399 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 6-126 |
| Cow position: | chr23:406344-406464 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-126 |
| Cow position: | chr23:1240876-1240754 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 6-126 |
| Cow position: | chr23:1640628-1640505 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-126 |
| Cow position: | chr23:7402523-7402400 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-126 |
| Cow position: | chr23:8959413-8959293 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-126 |
| Cow position: | chr23:9734231-9734113 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 6-128 |
| Cow position: | chr23:2799383-2799260 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 6-134 |
| Cow position: | chr23:1670733-1670603 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 7-121 |
| Cow position: | chr23:1883209-1883092 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 7-122 |
| Cow position: | chr23:1905844-1905726 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 7-124 |
| Cow position: | chr23:1924020-1924137 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-124 |
| Cow position: | chr23:9132850-9132970 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 7-124 |
| Cow position: | chr23:9268405-9268286 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 7-124 |
| Cow position: | chr23:18802457-18802577 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 7-124 |
| Cow position: | chr23:20744773-20744893 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 7-124 |
| Cow position: | chr23:25669254-25669371 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 7-124 |
| Cow position: | chr23:26003880-26003760 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 7-124 |
| Cow position: | chr23:28118287-28118404 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 106 |
| Conread position: | 7-124 |
| Cow position: | chr23:40778078-40777959 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 7-124 |
| Cow position: | chr23:40781142-40781024 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 7-126 |
| Cow position: | chr23:1605039-1604921 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 7-128 |
| Cow position: | chr23:1546032-1545907 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 7-143 |
| Cow position: | chr23:39793269-39793132 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 8-119 |
| Cow position: | chr23:19002254-19002367 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 8-122 |
| Cow position: | chr23:22298201-22298318 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 8-124 |
| Cow position: | chr23:1664503-1664387 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 92 |
| Conread position: | 8-124 |
| Cow position: | chr23:7175435-7175319 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 40, 90 |
| Conread position: | 8-124 |
| Cow position: | chr23:7374689-7374569 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 8-124 |
| Cow position: | chr23:7392467-7392587 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 8-124 |
| Cow position: | chr23:20001890-20001772 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 8-126 |
| Cow position: | chr23:25363158-25363037 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 10-111 |
| Cow position: | chr23:31601645-31601749 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 10-124 |
| Cow position: | chr23:38455372-38455489 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 12-124 |
| Cow position: | chr23:35929816-35929697 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 18-122 |
| Cow position: | chr23:20752817-20752711 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 18-124 |
| Cow position: | chr23:17796512-17796621 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 125-282 |
| Cow position: | chr23:534286-534439 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 125-284 |
| Cow position: | chr23:22238763-22238604 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 62, 118 |
| Conread position: | 125-320 |
| Cow position: | chr23:23104429-23104238 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 137, 56 |
| Conread position: | 126-282 |
| Cow position: | chr23:2563722-2563878 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 135, 31 |
| Conread position: | 347-639 |
| Cow position: | chr23:6690106-6689810 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 354-608 |
| Cow position: | chr23:30005149-30004892 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 367-615 |
| Cow position: | chr23:26350149-26349899 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 7, 91 |
| Conread position: | 372-590 |
| Cow position: | chr23:3457399-3457622 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 388-548 |
| Cow position: | chr23:8432391-8432226 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.