Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022I07.5 |
| Conread position: | 2-123 |
| Cow position: | chr25:3969214-3969089 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 3-124 |
| Cow position: | chr25:4522003-4522125 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 4-124 |
| Cow position: | chr25:33664081-33664204 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 5-124 |
| Cow position: | chr25:18969086-18968964 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 6-118 |
| Cow position: | chr25:36120014-36119899 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-122 |
| Cow position: | chr25:9023457-9023339 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 6-122 |
| Cow position: | chr25:12204283-12204164 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-122 |
| Cow position: | chr25:13840306-13840424 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-122 |
| Cow position: | chr25:16867042-16866926 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 48 |
| Conread position: | 6-122 |
| Cow position: | chr25:21245794-21245912 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-122 |
| Cow position: | chr25:25827275-25827155 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 51 |
| Conread position: | 6-122 |
| Cow position: | chr25:33839201-33839082 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 6-123 |
| Cow position: | chr25:1096390-1096270 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-123 |
| Cow position: | chr25:15714694-15714574 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:3992603-3992482 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:5514819-5514701 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 45, 91 |
| Conread position: | 6-124 |
| Cow position: | chr25:6464216-6464337 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:7216641-7216520 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:8347322-8347201 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:10643497-10643616 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 74 |
| Conread position: | 6-124 |
| Cow position: | chr25:11054733-11054622 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:11436989-11437110 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:11585331-11585203 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:14791565-14791448 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 72 |
| Conread position: | 6-124 |
| Cow position: | chr25:15273502-15273382 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:15694797-15694675 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:16921981-16922100 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 6-124 |
| Cow position: | chr25:17658426-17658307 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 6-124 |
| Cow position: | chr25:17992328-17992449 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:21193131-21193251 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:21209135-21209254 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 6-124 |
| Cow position: | chr25:26112087-26111974 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:26654719-26654599 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:30279394-30279516 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:30319636-30319757 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr25:33687083-33687206 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 6-126 |
| Cow position: | chr25:2414643-2414527 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 6-126 |
| Cow position: | chr25:30852585-30852464 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 6-126 |
| Cow position: | chr25:32278216-32278339 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-127 |
| Cow position: | chr25:33256181-33256063 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 85 |
| Conread position: | 7-120 |
| Cow position: | chr25:6421239-6421355 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 7-120 |
| Cow position: | chr25:9349445-9349561 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 7-122 |
| Cow position: | chr25:21961195-21961312 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 7-122 |
| Cow position: | chr25:31732924-31733042 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 7-123 |
| Cow position: | chr25:11051189-11051076 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 7-124 |
| Cow position: | chr25:5341462-5341343 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 7-124 |
| Cow position: | chr25:7800948-7800828 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 7-124 |
| Cow position: | chr25:8120588-8120469 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 7-124 |
| Cow position: | chr25:22531099-22530979 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 7-124 |
| Cow position: | chr25:26087327-26087207 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 8-116 |
| Cow position: | chr25:10366878-10366986 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 86 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-116 |
| Cow position: | chr25:25948584-25948695 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 8-120 |
| Cow position: | chr25:18564306-18564191 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 8-123 |
| Cow position: | chr25:10010911-10011026 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 8-124 |
| Cow position: | chr25:11830085-11830204 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 8-124 |
| Cow position: | chr25:14720294-14720176 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 8-124 |
| Cow position: | chr25:21950937-21950818 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 8-124 |
| Cow position: | chr25:25051573-25051692 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 8-124 |
| Cow position: | chr25:25754186-25754303 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 75 |
| Conread position: | 8-124 |
| Cow position: | chr25:27868615-27868502 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 9-124 |
| Cow position: | chr25:7641644-7641761 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 10-122 |
| Cow position: | chr25:13720729-13720846 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 10-123 |
| Cow position: | chr25:12817181-12817066 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 10-126 |
| Cow position: | chr25:21191296-21191180 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 86 |
| Conread position: | 12-124 |
| Cow position: | chr25:4860638-4860754 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 18-111 |
| Cow position: | chr25:20133615-20133708 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-124 |
| Cow position: | chr25:2624436-2624335 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 115-297 |
| Cow position: | chr25:7441052-7441231 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 125-261 |
| Cow position: | chr25:26306150-26306016 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 126-297 |
| Cow position: | chr25:24115261-24115090 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 164, 59 |
| Conread position: | 376-610 |
| Cow position: | chr25:24952442-24952673 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 79 |
Show alignments to all cow chromosomes.