Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022I07.5 |
| Conread position: | 1-114 |
| Cow position: | chr29:17286-17401 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 2-124 |
| Cow position: | chr29:30028614-30028738 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 4-124 |
| Cow position: | chr29:36209739-36209621 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 5-140 |
| Cow position: | chr29:12004950-12005088 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 6-109 |
| Cow position: | chr29:6844816-6844921 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-113 |
| Cow position: | chr29:43252874-43252983 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-120 |
| Cow position: | chr29:5977308-5977424 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 6-121 |
| Cow position: | chr29:26771254-26771135 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-122 |
| Cow position: | chr29:4120659-4120547 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 6-122 |
| Cow position: | chr29:26734847-26734728 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-122 |
| Cow position: | chr29:31926477-31926595 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 12 |
| Conread position: | 6-123 |
| Cow position: | chr29:4625179-4625299 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-123 |
| Cow position: | chr29:20626390-20626271 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-123 |
| Cow position: | chr29:28689424-28689304 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 6-123 |
| Cow position: | chr29:39567501-39567380 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:2071755-2071875 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:2744458-2744579 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:4328247-4328127 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 6-124 |
| Cow position: | chr29:4875089-4875210 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:6635918-6635797 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:9332958-9332837 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:9638498-9638619 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:9709512-9709392 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:10456739-10456859 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:11136076-11136195 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 6-124 |
| Cow position: | chr29:15289554-15289433 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:18748773-18748888 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:18781676-18781559 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:19756262-19756141 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:25423638-25423518 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 6-124 |
| Cow position: | chr29:26017700-26017818 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 6-124 |
| Cow position: | chr29:26415915-26415794 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:29066240-29066120 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 112 |
| Conread position: | 6-124 |
| Cow position: | chr29:31899209-31899327 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 6-124 |
| Cow position: | chr29:36216931-36216812 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 6-124 |
| Cow position: | chr29:36530677-36530556 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:37617964-37617848 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 6-124 |
| Cow position: | chr29:38581781-38581662 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 6-124 |
| Cow position: | chr29:40096770-40096658 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:40902906-40903026 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 6-124 |
| Cow position: | chr29:45005805-45005923 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-126 |
| Cow position: | chr29:686378-686500 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 6-126 |
| Cow position: | chr29:17607230-17607107 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 6-126 |
| Cow position: | chr29:35501835-35501954 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 87 |
| Conread position: | 6-299 |
| Cow position: | chr29:26519647-26519931 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 41, 126 |
| Conread position: | 7-110 |
| Cow position: | chr29:87209-87310 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 7-123 |
| Cow position: | chr29:22936092-22935975 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-124 |
| Cow position: | chr29:21443531-21443651 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 7-126 |
| Cow position: | chr29:1325250-1325132 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 7-128 |
| Cow position: | chr29:35291912-35291788 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 8-120 |
| Cow position: | chr29:20933517-20933402 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 8-122 |
| Cow position: | chr29:35434682-35434565 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 8-124 |
| Cow position: | chr29:4480364-4480481 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 8-124 |
| Cow position: | chr29:15944381-15944262 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 8-124 |
| Cow position: | chr29:21196839-21196957 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 8-124 |
| Cow position: | chr29:23119569-23119684 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 8-124 |
| Cow position: | chr29:23240324-23240206 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 8-124 |
| Cow position: | chr29:35281312-35281196 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-126 |
| Cow position: | chr29:41811766-41811883 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 12-124 |
| Cow position: | chr29:34745847-34745961 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 18-122 |
| Cow position: | chr29:17543252-17543145 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 18-122 |
| Cow position: | chr29:37719712-37719607 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 22-124 |
| Cow position: | chr29:19125152-19125053 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 125-298 |
| Cow position: | chr29:19949361-19949527 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 342-695 |
| Cow position: | chr29:14025090-14025449 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 128 |
| Conread position: | 362-637 |
| Cow position: | chr29:33112125-33111833 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 121 |
| Conread position: | 373-615 |
| Cow position: | chr29:20622489-20622240 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 98 |
| Conread position: | 392-578 |
| Cow position: | chr29:26239673-26239868 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.