Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022O19.3 |
| Conread position: | 1-301 |
| Cow position: | chr16:30070749-30070449 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 67, 237 |
| Conread position: | 1-328 |
| Cow position: | chr16:23721479-23721816 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 187 |
| Conread position: | 1-336 |
| Cow position: | chr16:21809928-21809578 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 63, 234 |
| Conread position: | 2-298 |
| Cow position: | chr16:32774392-32774682 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 201, 66 |
| Conread position: | 4-255 |
| Cow position: | chr16:20133942-20134189 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 5-532 |
| Cow position: | chr16:8618470-8617920 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 224 |
| Conread position: | 13-304 |
| Cow position: | chr16:38543312-38543605 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 52, 274 |
| Conread position: | 62-493 |
| Cow position: | chr16:640919-641349 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 93, 16 |
| Conread position: | 85-420 |
| Cow position: | chr16:28867088-28867444 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 70, 102 |
| Conread position: | 564-734 |
| Cow position: | chr16:12242921-12243090 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 122, 31 |
| Conread position: | 566-744 |
| Cow position: | chr16:10198627-10198442 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 574-744 |
| Cow position: | chr16:14444800-14444629 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 86 |
| Conread position: | 578-738 |
| Cow position: | chr16:23301954-23301792 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 118 |
| Conread position: | 582-744 |
| Cow position: | chr16:2722427-2722591 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 597-727 |
| Cow position: | chr16:53516047-53516177 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 599-744 |
| Cow position: | chr16:12474244-12474098 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 600-744 |
| Cow position: | chr16:5131184-5131326 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 5, 39 |
| Conread position: | 600-744 |
| Cow position: | chr16:13044444-13044299 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 600-744 |
| Cow position: | chr16:13209912-13209772 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 86, 9 |
| Conread position: | 600-744 |
| Cow position: | chr16:14799143-14799284 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 600-744 |
| Cow position: | chr16:27075758-27075612 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 600-744 |
| Cow position: | chr16:43849922-43850068 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 601-744 |
| Cow position: | chr16:22785448-22785592 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-742 |
| Cow position: | chr16:41680166-41680307 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 602-742 |
| Cow position: | chr16:48894230-48894371 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-744 |
| Cow position: | chr16:14084555-14084698 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-744 |
| Cow position: | chr16:26106746-26106605 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 602-744 |
| Cow position: | chr16:30572031-30572172 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 602-744 |
| Cow position: | chr16:37024659-37024798 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-744 |
| Cow position: | chr16:53547022-53547159 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 603-742 |
| Cow position: | chr16:47781897-47781756 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 603-744 |
| Cow position: | chr16:43850234-43850376 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 604-719 |
| Cow position: | chr16:14824389-14824504 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 604-738 |
| Cow position: | chr16:26075444-26075309 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 604-741 |
| Cow position: | chr16:31374312-31374451 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 608-744 |
| Cow position: | chr16:30109245-30109373 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 614-744 |
| Cow position: | chr16:24634958-24635089 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 615-741 |
| Cow position: | chr16:17218879-17219001 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 99 |
| Conread position: | 615-744 |
| Cow position: | chr16:37508663-37508535 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 624-744 |
| Cow position: | chr16:38397765-38397885 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 629-744 |
| Cow position: | chr16:15509499-15509384 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 80 |
Show alignments to all cow chromosomes.