Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022O19.3 |
| Conread position: | 1-181 |
| Cow position: | chr21:34085268-34085447 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 1-255 |
| Cow position: | chr21:406322-406575 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 61, 193 |
| Conread position: | 1-301 |
| Cow position: | chr21:4275160-4275462 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 1-408 |
| Cow position: | chr21:3142836-3143259 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 134 |
| Conread position: | 1-408 |
| Cow position: | chr21:27595818-27595389 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 1-459 |
| Cow position: | chr21:30316284-30315807 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 1-532 |
| Cow position: | chr21:1075084-1074547 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 360 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 82, 16 |
| Conread position: | 4-378 |
| Cow position: | chr21:963441-963061 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 64, 319 |
| Conread position: | 5-370 |
| Cow position: | chr21:45301469-45301841 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 58, 207 |
| Conread position: | 10-200 |
| Cow position: | chr21:34172927-34173116 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 22-305 |
| Cow position: | chr21:2900742-2900453 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 23-304 |
| Cow position: | chr21:749734-750014 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 50, 78 |
| Conread position: | 535-744 |
| Cow position: | chr21:23285925-23286130 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 541-744 |
| Cow position: | chr21:26741796-26742009 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 583-744 |
| Cow position: | chr21:17671705-17671865 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 587-744 |
| Cow position: | chr21:45448256-45448100 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 99, 15 |
| Conread position: | 592-736 |
| Cow position: | chr21:45963068-45962923 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 5 |
| Conread position: | 593-742 |
| Cow position: | chr21:28651012-28650864 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 93, 66 |
| Conread position: | 599-744 |
| Cow position: | chr21:6282582-6282440 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 87, 104 |
| Conread position: | 602-727 |
| Cow position: | chr21:40441760-40441885 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 118 |
| Conread position: | 602-729 |
| Cow position: | chr21:29943564-29943436 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-735 |
| Cow position: | chr21:25019657-25019523 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 602-737 |
| Cow position: | chr21:26631803-26631939 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-738 |
| Cow position: | chr21:12079871-12079735 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 84, 98 |
| Conread position: | 602-742 |
| Cow position: | chr21:454968-454834 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 602-744 |
| Cow position: | chr21:15543296-15543431 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 602-744 |
| Cow position: | chr21:22942034-22941892 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 87, 73 |
| Conread position: | 602-744 |
| Cow position: | chr21:27678673-27678530 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-744 |
| Cow position: | chr21:39074824-39074962 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 603-741 |
| Cow position: | chr21:5487191-5487053 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 89, 9 |
| Conread position: | 603-744 |
| Cow position: | chr21:39527540-39527401 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 604-735 |
| Cow position: | chr21:5588776-5588907 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 604-744 |
| Cow position: | chr21:27089296-27089437 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 608-742 |
| Cow position: | chr21:24971974-24972109 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.