Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022O19.3 |
| Conread position: | 1-254 |
| Cow position: | chr5:46288269-46288019 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 124 |
| Conread position: | 1-363 |
| Cow position: | chr5:18887556-18887935 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 1-408 |
| Cow position: | chr5:74731494-74731061 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 89 |
| Conread position: | 3-304 |
| Cow position: | chr5:54824128-54824428 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 176 |
| Conread position: | 5-262 |
| Cow position: | chr5:47822347-47822606 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 66, 151 |
| Conread position: | 8-190 |
| Cow position: | chr5:49156535-49156718 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 35 |
| Conread position: | 9-255 |
| Cow position: | chr5:20403403-20403158 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 143, 59 |
| Conread position: | 15-587 |
| Cow position: | chr5:29867924-29867343 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 381 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 198 |
| Conread position: | 62-419 |
| Cow position: | chr5:25636429-25636055 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 93, 149 |
| Conread position: | 537-744 |
| Cow position: | chr5:27493416-27493210 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 553-744 |
| Cow position: | chr5:51075954-51076146 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 570-733 |
| Cow position: | chr5:19298828-19298994 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 25 |
| Conread position: | 581-743 |
| Cow position: | chr5:8202828-8202658 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 582-738 |
| Cow position: | chr5:55856456-55856606 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 582-744 |
| Cow position: | chr5:12602532-12602369 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 9, 110 |
| Conread position: | 583-742 |
| Cow position: | chr5:47697753-47697908 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 103, 131 |
| Conread position: | 590-730 |
| Cow position: | chr5:50159848-50159705 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 590-744 |
| Cow position: | chr5:42587277-42587433 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 590-744 |
| Cow position: | chr5:56826672-56826517 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 69 |
| Conread position: | 597-742 |
| Cow position: | chr5:67463835-67463689 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 597-744 |
| Cow position: | chr5:20648638-20648788 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 598-736 |
| Cow position: | chr5:57930412-57930551 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 599-743 |
| Cow position: | chr5:15704946-15705090 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 599-744 |
| Cow position: | chr5:12581312-12581168 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 600-744 |
| Cow position: | chr5:51953494-51953352 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 86, 39 |
| Conread position: | 601-744 |
| Cow position: | chr5:62580596-62580452 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 602-737 |
| Cow position: | chr5:59640190-59640054 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-738 |
| Cow position: | chr5:15808306-15808438 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 602-738 |
| Cow position: | chr5:21145610-21145747 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-738 |
| Cow position: | chr5:26562752-26562621 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 53 |
| Conread position: | 602-739 |
| Cow position: | chr5:37048659-37048525 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 87, 71 |
| Conread position: | 602-744 |
| Cow position: | chr5:14071966-14072108 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 84, 107 |
| Conread position: | 602-744 |
| Cow position: | chr5:23235077-23234942 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 84, 51 |
| Conread position: | 602-744 |
| Cow position: | chr5:27679206-27679348 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 602-744 |
| Cow position: | chr5:29029960-29029822 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 602-744 |
| Cow position: | chr5:31551445-31551307 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 602-744 |
| Cow position: | chr5:33516156-33516299 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-744 |
| Cow position: | chr5:37624692-37624550 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 84, 128 |
| Conread position: | 602-744 |
| Cow position: | chr5:57629677-57629820 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-744 |
| Cow position: | chr5:58384904-58384759 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-744 |
| Cow position: | chr5:65590492-65590634 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 84, 10 |
| Conread position: | 602-744 |
| Cow position: | chr5:67002057-67001913 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 604-738 |
| Cow position: | chr5:60725877-60725741 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 604-744 |
| Cow position: | chr5:67579667-67579526 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 614-740 |
| Cow position: | chr5:35749141-35749016 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 91 |
| Conread position: | 633-743 |
| Cow position: | chr5:54761618-54761508 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 638-741 |
| Cow position: | chr5:37610854-37610749 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 642-744 |
| Cow position: | chr5:31944169-31944065 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.