Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022O19.3 |
| Conread position: | 5-318 |
| Cow position: | chr6:10059663-10059352 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 15-305 |
| Cow position: | chr6:64816398-64816690 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 140, 53 |
| Conread position: | 22-301 |
| Cow position: | chr6:2953416-2953691 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 55-281 |
| Cow position: | chr6:17424878-17424649 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 88-304 |
| Cow position: | chr6:8072850-8073067 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 528-735 |
| Cow position: | chr6:27457933-27457725 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 530-744 |
| Cow position: | chr6:29078436-29078221 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 35, 7 |
| Conread position: | 554-742 |
| Cow position: | chr6:62082973-62082791 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 563-744 |
| Cow position: | chr6:34557190-34557001 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 9, 142 |
| Conread position: | 584-744 |
| Cow position: | chr6:45692019-45692177 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 586-744 |
| Cow position: | chr6:5678387-5678544 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 587-742 |
| Cow position: | chr6:4665859-4666012 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 86 |
| Conread position: | 590-744 |
| Cow position: | chr6:58593500-58593652 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 592-744 |
| Cow position: | chr6:53416312-53416465 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 593-744 |
| Cow position: | chr6:3018109-3017959 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 597-744 |
| Cow position: | chr6:35126475-35126621 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 597-744 |
| Cow position: | chr6:35265857-35265998 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 599-742 |
| Cow position: | chr6:3935989-3936133 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 599-742 |
| Cow position: | chr6:6635778-6635638 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 85 |
| Conread position: | 599-744 |
| Cow position: | chr6:20332944-20332806 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 600-736 |
| Cow position: | chr6:23892188-23892052 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 86, 131 |
| Conread position: | 601-743 |
| Cow position: | chr6:20749019-20748880 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 602-734 |
| Cow position: | chr6:16494978-16495111 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 602-734 |
| Cow position: | chr6:30287179-30287046 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 602-738 |
| Cow position: | chr6:6722776-6722648 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 602-738 |
| Cow position: | chr6:24337438-24337575 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 81, 89 |
| Conread position: | 602-741 |
| Cow position: | chr6:15261221-15261080 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-741 |
| Cow position: | chr6:15262266-15262125 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-742 |
| Cow position: | chr6:1939855-1939997 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 75 |
| Conread position: | 602-742 |
| Cow position: | chr6:28008821-28008962 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-742 |
| Cow position: | chr6:69273909-69274049 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 88, 32 |
| Conread position: | 602-744 |
| Cow position: | chr6:6244111-6244251 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 129, 78 |
| Conread position: | 602-744 |
| Cow position: | chr6:14161985-14162128 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-744 |
| Cow position: | chr6:24260175-24260317 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 602-744 |
| Cow position: | chr6:26692493-26692632 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 107 |
| Conread position: | 602-744 |
| Cow position: | chr6:31687559-31687699 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 87, 107 |
| Conread position: | 602-744 |
| Cow position: | chr6:35697784-35697927 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 602-744 |
| Cow position: | chr6:40241314-40241179 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 84, 50 |
| Conread position: | 602-744 |
| Cow position: | chr6:50502224-50502085 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 602-744 |
| Cow position: | chr6:55398430-55398287 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 603-744 |
| Cow position: | chr6:14280292-14280150 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 603-744 |
| Cow position: | chr6:19715612-19715754 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 40, 128 |
| Conread position: | 604-744 |
| Cow position: | chr6:13092443-13092584 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 605-736 |
| Cow position: | chr6:24496298-24496430 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 605-736 |
| Cow position: | chr6:44771452-44771322 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 607-736 |
| Cow position: | chr6:44389620-44389747 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 79, 101 |
| Conread position: | 607-744 |
| Cow position: | chr6:11159366-11159502 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 609-742 |
| Cow position: | chr6:54296237-54296104 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 81, 26 |
| Conread position: | 629-744 |
| Cow position: | chr6:37085499-37085386 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 642-738 |
| Cow position: | chr6:35832146-35832050 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 83 |
Show alignments to all cow chromosomes.