Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022O19.3 |
| Conread position: | 1-235 |
| Cow position: | chr9:25374986-25375217 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 1-266 |
| Cow position: | chr9:45150916-45150657 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 156, 20 |
| Conread position: | 2-298 |
| Cow position: | chr9:49847528-49847814 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 130 |
| Conread position: | 3-413 |
| Cow position: | chr9:28696199-28695762 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 63, 178 |
| Conread position: | 10-361 |
| Cow position: | chr9:36285623-36285975 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 15-420 |
| Cow position: | chr9:3046102-3045696 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 74-304 |
| Cow position: | chr9:25582508-25582743 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 14, 226 |
| Conread position: | 559-727 |
| Cow position: | chr9:37301733-37301901 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 127, 41 |
| Conread position: | 595-738 |
| Cow position: | chr9:15855612-15855468 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 597-740 |
| Cow position: | chr9:52725952-52725813 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 598-742 |
| Cow position: | chr9:25503074-25502932 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 598-744 |
| Cow position: | chr9:416709-416855 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 598-744 |
| Cow position: | chr9:40923226-40923079 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 599-737 |
| Cow position: | chr9:35526917-35527056 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 602-732 |
| Cow position: | chr9:6109341-6109470 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 602-736 |
| Cow position: | chr9:20394802-20394667 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 602-736 |
| Cow position: | chr9:34188414-34188550 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 602-738 |
| Cow position: | chr9:1517857-1517718 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 602-738 |
| Cow position: | chr9:35794862-35795000 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 602-741 |
| Cow position: | chr9:8234043-8234183 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 602-742 |
| Cow position: | chr9:2638886-2638749 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 62 |
| Conread position: | 602-742 |
| Cow position: | chr9:18570955-18570814 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-742 |
| Cow position: | chr9:34763426-34763285 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-743 |
| Cow position: | chr9:22376692-22376831 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 602-743 |
| Cow position: | chr9:48076294-48076151 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 602-744 |
| Cow position: | chr9:1527369-1527227 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 602-744 |
| Cow position: | chr9:5622612-5622469 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 602-744 |
| Cow position: | chr9:19835959-19835815 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 123 |
| Conread position: | 602-744 |
| Cow position: | chr9:39994331-39994188 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 602-744 |
| Cow position: | chr9:41318555-41318413 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 602-744 |
| Cow position: | chr9:55203224-55203082 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 84, 8 |
| Conread position: | 603-744 |
| Cow position: | chr9:4834419-4834560 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 83, 122 |
| Conread position: | 603-744 |
| Cow position: | chr9:23294076-23294218 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 603-744 |
| Cow position: | chr9:56795286-56795149 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 83, 46 |
| Conread position: | 605-742 |
| Cow position: | chr9:62721406-62721268 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 607-742 |
| Cow position: | chr9:33326051-33326186 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 125 |
| Conread position: | 617-742 |
| Cow position: | chr9:4985918-4985796 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 619-735 |
| Cow position: | chr9:34674519-34674632 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 620-742 |
| Cow position: | chr9:45140339-45140461 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 7, 29 |
| Conread position: | 620-744 |
| Cow position: | chr9:12199460-12199336 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 27 |
Show alignments to all cow chromosomes.