Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8022O19.3 |
| Conread position: | 1-210 |
| Cow position: | chrX:20506184-20505976 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 67, 155 |
| Conread position: | 1-262 |
| Cow position: | chrX:2765992-2765729 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 1-304 |
| Cow position: | chrX:6198465-6198768 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 1-306 |
| Cow position: | chrX:3015058-3014760 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 158, 43 |
| Conread position: | 1-307 |
| Cow position: | chrX:2264840-2265145 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 1-420 |
| Cow position: | chrX:15119132-15119563 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 64, 34 |
| Conread position: | 1-420 |
| Cow position: | chrX:24615794-24616216 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 67, 212 |
| Conread position: | 9-412 |
| Cow position: | chrX:10991194-10990781 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 15-291 |
| Cow position: | chrX:12638721-12638442 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 22-220 |
| Cow position: | chrX:24555722-24555921 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 25-255 |
| Cow position: | chrX:27621578-27621807 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 36 |
| Conread position: | 25-300 |
| Cow position: | chrX:24766718-24766985 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 26-304 |
| Cow position: | chrX:29120058-29119777 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 41-500 |
| Cow position: | chrX:37332805-37332332 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 338 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 112 |
| Conread position: | 93-363 |
| Cow position: | chrX:20874423-20874687 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 35 |
| Conread position: | 127-408 |
| Cow position: | chrX:27602869-27602578 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 545-744 |
| Cow position: | chrX:40353992-40353793 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 87 |
| Conread position: | 572-744 |
| Cow position: | chrX:25653738-25653566 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 578-744 |
| Cow position: | chrX:502914-503082 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 579-744 |
| Cow position: | chrX:34035788-34035623 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 587-735 |
| Cow position: | chrX:19216285-19216433 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 587-744 |
| Cow position: | chrX:19017597-19017755 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 594-743 |
| Cow position: | chrX:24886163-24886313 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 597-744 |
| Cow position: | chrX:24286685-24286541 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 598-738 |
| Cow position: | chrX:9910130-9910271 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 598-742 |
| Cow position: | chrX:37981012-37980868 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 12, 86 |
| Conread position: | 598-744 |
| Cow position: | chrX:4590576-4590429 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 599-735 |
| Cow position: | chrX:8557566-8557702 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 599-744 |
| Cow position: | chrX:2147934-2147794 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 599-744 |
| Cow position: | chrX:16817268-16817129 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 600-736 |
| Cow position: | chrX:11675702-11675561 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 600-742 |
| Cow position: | chrX:13403123-13403260 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 600-742 |
| Cow position: | chrX:18518663-18518519 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 601-744 |
| Cow position: | chrX:11851150-11851289 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 601-744 |
| Cow position: | chrX:19391649-19391792 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 85, 55 |
| Conread position: | 602-742 |
| Cow position: | chrX:35552963-35552828 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 53 |
| Conread position: | 602-743 |
| Cow position: | chrX:20505329-20505188 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 84, 27 |
| Conread position: | 602-744 |
| Cow position: | chrX:1330174-1330317 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-744 |
| Cow position: | chrX:4440475-4440335 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 602-744 |
| Cow position: | chrX:5956715-5956855 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 602-744 |
| Cow position: | chrX:6472334-6472192 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 84, 100 |
| Conread position: | 602-744 |
| Cow position: | chrX:6672403-6672263 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 84, 124 |
| Conread position: | 602-744 |
| Cow position: | chrX:18699735-18699878 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 602-744 |
| Cow position: | chrX:18814800-18814650 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 602-744 |
| Cow position: | chrX:30785179-30785039 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 48 |
| Conread position: | 604-738 |
| Cow position: | chrX:25453794-25453659 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 604-744 |
| Cow position: | chrX:37236624-37236486 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 80, 123 |
| Conread position: | 607-744 |
| Cow position: | chrX:1427893-1427756 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 607-744 |
| Cow position: | chrX:4625532-4625395 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 608-738 |
| Cow position: | chrX:12688458-12688585 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 24 |
| Conread position: | 609-744 |
| Cow position: | chrX:4019304-4019440 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 614-742 |
| Cow position: | chrX:37749269-37749140 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 614-744 |
| Cow position: | chrX:4630764-4630894 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 621-742 |
| Cow position: | chrX:30729178-30729300 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 637-742 |
| Cow position: | chrX:25921214-25921316 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 49, 30 |
Show alignments to all cow chromosomes.